BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0152700 Os01g0152700|AK059159
(41 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59910.1 | chr5:24127206-24127658 FORWARD LENGTH=151 83 2e-17
AT3G45980.1 | chr3:16897492-16897944 REVERSE LENGTH=151 83 2e-17
AT3G46030.1 | chr3:16913614-16914051 REVERSE LENGTH=146 83 2e-17
AT1G07790.1 | chr1:2413049-2413495 FORWARD LENGTH=149 83 2e-17
AT5G22880.1 | chr5:7652130-7652567 REVERSE LENGTH=146 83 3e-17
AT2G28720.1 | chr2:12327043-12327498 FORWARD LENGTH=152 83 3e-17
AT3G09480.1 | chr3:2914890-2915270 REVERSE LENGTH=127 83 3e-17
AT5G02570.1 | chr5:576742-577140 REVERSE LENGTH=133 83 3e-17
AT2G37470.1 | chr2:15736832-15737248 FORWARD LENGTH=139 82 7e-17
AT3G53650.1 | chr3:19889358-19889774 FORWARD LENGTH=139 82 8e-17
AT1G08170.1 | chr1:2562941-2563672 REVERSE LENGTH=244 57 1e-09
>AT5G59910.1 | chr5:24127206-24127658 FORWARD LENGTH=151
Length = 150
Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 110 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
>AT3G45980.1 | chr3:16897492-16897944 REVERSE LENGTH=151
Length = 150
Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 110 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
>AT3G46030.1 | chr3:16913614-16914051 REVERSE LENGTH=146
Length = 145
Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 105 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
>AT1G07790.1 | chr1:2413049-2413495 FORWARD LENGTH=149
Length = 148
Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 108 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
>AT5G22880.1 | chr5:7652130-7652567 REVERSE LENGTH=146
Length = 145
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 105 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
>AT2G28720.1 | chr2:12327043-12327498 FORWARD LENGTH=152
Length = 151
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 111 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151
>AT3G09480.1 | chr3:2914890-2915270 REVERSE LENGTH=127
Length = 126
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 86 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 126
>AT5G02570.1 | chr5:576742-577140 REVERSE LENGTH=133
Length = 132
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 92 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132
>AT2G37470.1 | chr2:15736832-15737248 FORWARD LENGTH=139
Length = 138
Score = 81.6 bits (200), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/40 (100%), Positives = 40/40 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 40
NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct: 99 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138
>AT3G53650.1 | chr3:19889358-19889774 FORWARD LENGTH=139
Length = 138
Score = 81.6 bits (200), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 1 NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 41
NKKPTITSREIQTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct: 98 NKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138
>AT1G08170.1 | chr1:2562941-2563672 REVERSE LENGTH=244
Length = 243
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 34/37 (91%)
Query: 2 KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 38
K+ T++SREI+ AVRLVLPGEL++HAV+EG+KAV+ F
Sbjct: 199 KRRTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNF 235
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.307 0.121 0.311
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 629,173
Number of extensions: 9883
Number of successful extensions: 32
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 11
Length of query: 41
Length of database: 11,106,569
Length adjustment: 15
Effective length of query: 26
Effective length of database: 10,695,329
Effective search space: 278078554
Effective search space used: 278078554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 104 (44.7 bits)