BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0477500 Os08g0477500|J100084C06
(108 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0477500 Patatin family protein 189 4e-49
Os08g0476900 Similar to Patatin-like protein 1 144 2e-35
Os08g0477100 Similar to Latex allergen 143 3e-35
Os11g0614400 Similar to Patatin-like protein 1 140 2e-34
Os08g0376500 Similar to Patatin-like protein 2 (Fragment) 137 1e-33
Os03g0393900 Similar to S.tuberosum patatin (Fragment) 137 1e-33
Os01g0898500 Similar to Patatin (Fragment) 121 1e-28
Os09g0462400 Patatin family protein 118 1e-27
Os12g0551600 105 8e-24
Os12g0552200 Similar to Patatin-like protein 3 80 5e-16
Os03g0254400 Patatin family protein 70 3e-13
>Os08g0477500 Patatin family protein
Length = 108
Score = 189 bits (480), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 17 KVKMVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAM 76
KVKMVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAM
Sbjct: 17 KVKMVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAM 76
Query: 77 LTAPNENNRPLFAADELAKFYIEHSPSIFPQK 108
LTAPNENNRPLFAADELAKFYIEHSPSIFPQK
Sbjct: 77 LTAPNENNRPLFAADELAKFYIEHSPSIFPQK 108
>Os08g0476900 Similar to Patatin-like protein 1
Length = 430
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 79/87 (90%)
Query: 20 MVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAMLTA 79
+VTVLSIDGGGVRGIIP TILAFLE++LQ+LDGP+AR+A+YFDV+AGTSTGGL+TAMLTA
Sbjct: 46 IVTVLSIDGGGVRGIIPGTILAFLEEKLQELDGPEARLANYFDVIAGTSTGGLVTAMLTA 105
Query: 80 PNENNRPLFAADELAKFYIEHSPSIFP 106
PN+N PLFAA ++ FY+EH P IFP
Sbjct: 106 PNDNGDPLFAARDINDFYLEHCPRIFP 132
>Os08g0477100 Similar to Latex allergen
Length = 431
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 78/89 (87%)
Query: 20 MVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAMLTA 79
+VTVLSIDGGGVRGIIP TILA LE++LQKLDG DARIADYFDV+AGTSTGGL+TAMLTA
Sbjct: 48 IVTVLSIDGGGVRGIIPGTILASLEEKLQKLDGADARIADYFDVIAGTSTGGLVTAMLTA 107
Query: 80 PNENNRPLFAADELAKFYIEHSPSIFPQK 108
PN+ RPLFAA ++ FY++H P IFP +
Sbjct: 108 PNDQGRPLFAAKDINDFYLKHCPKIFPPR 136
>Os11g0614400 Similar to Patatin-like protein 1
Length = 417
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 80/90 (88%)
Query: 19 KMVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAMLT 78
+++TVLSIDGGG+RG+IPATILA LE +LQ+LDGP+ARIADYFDV+AGTSTG L+T+ML
Sbjct: 30 RLITVLSIDGGGIRGLIPATILACLEAKLQELDGPEARIADYFDVIAGTSTGALITSMLA 89
Query: 79 APNENNRPLFAADELAKFYIEHSPSIFPQK 108
AP+++ RPLFAA +L FY+E+ P IFPQ+
Sbjct: 90 APDDDRRPLFAAGDLTNFYLENGPKIFPQR 119
>Os08g0376500 Similar to Patatin-like protein 2 (Fragment)
Length = 442
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 75/87 (86%)
Query: 20 MVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAMLTA 79
+V VLSIDGGGVRGIIP TILAFLE++LQ+LDGP AR+ADYFDV+AGTSTGGL+TAML A
Sbjct: 55 IVAVLSIDGGGVRGIIPGTILAFLEEKLQELDGPAARVADYFDVIAGTSTGGLVTAMLAA 114
Query: 80 PNENNRPLFAADELAKFYIEHSPSIFP 106
P + RPLFAA ++ FY+ HSP IFP
Sbjct: 115 PGADGRPLFAAKDIVDFYLRHSPKIFP 141
>Os03g0393900 Similar to S.tuberosum patatin (Fragment)
Length = 432
Score = 137 bits (346), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/88 (69%), Positives = 77/88 (87%)
Query: 21 VTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAMLTAP 80
VT+L+IDGGG+RG+IP TILAFLE LQ+LDGPDAR+ADYFD +AGTSTGGL+TAML AP
Sbjct: 35 VTLLAIDGGGIRGLIPGTILAFLEARLQELDGPDARLADYFDCIAGTSTGGLITAMLAAP 94
Query: 81 NENNRPLFAADELAKFYIEHSPSIFPQK 108
++ RPLFAA ++ +FY+++ P IFPQK
Sbjct: 95 GDHGRPLFAASDINRFYLDNGPLIFPQK 122
>Os01g0898500 Similar to Patatin (Fragment)
Length = 411
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 74/94 (78%), Gaps = 3/94 (3%)
Query: 17 KVKMVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAM 76
K M+T+LSIDGGGV+GIIPA IL+FLE +LQ+LDG DARIA+YFD +AGTSTGGL+ M
Sbjct: 12 KGNMITILSIDGGGVKGIIPAVILSFLESKLQELDGKDARIANYFDAIAGTSTGGLIAGM 71
Query: 77 LTAPN--ENNRPLFAADELAKFYIEHSPSIFPQK 108
L AP+ N+P +A D + FY++HSP IFP +
Sbjct: 72 LAAPSLGNANQPCYAKD-IVPFYLKHSPHIFPHR 104
>Os09g0462400 Patatin family protein
Length = 387
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 76/88 (86%)
Query: 20 MVTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAMLTA 79
++TVLSIDGGG+RGIIPA +L FLE ELQKLDG +ARIADYFDV+AGTSTGGL+TAML A
Sbjct: 18 LITVLSIDGGGIRGIIPAVVLTFLESELQKLDGEEARIADYFDVIAGTSTGGLVTAMLAA 77
Query: 80 PNENNRPLFAADELAKFYIEHSPSIFPQ 107
PN+ RPLFAA ++ FY+ H+P IFPQ
Sbjct: 78 PNKKRRPLFAAKDIKAFYMNHAPKIFPQ 105
>Os12g0551600
Length = 477
Score = 105 bits (262), Expect = 8e-24, Method: Composition-based stats.
Identities = 62/92 (67%), Positives = 73/92 (79%), Gaps = 4/92 (4%)
Query: 21 VTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGGLLTAMLTAP 80
VTVL+IDGGG+RGIIP +L FLE ELQ+LDGP+AR+ADYFD +AGTSTGGL+TAML AP
Sbjct: 75 VTVLTIDGGGIRGIIPGKVLEFLENELQQLDGPEARLADYFDYIAGTSTGGLITAMLAAP 134
Query: 81 ----NENNRPLFAADELAKFYIEHSPSIFPQK 108
+ RPLFAA E+ FY EH P IFPQ+
Sbjct: 135 GAGGDGRRRPLFAAKEICPFYQEHGPRIFPQR 166
>Os12g0552200 Similar to Patatin-like protein 3
Length = 193
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 44/51 (86%), Gaps = 2/51 (3%)
Query: 21 VTVLSIDGGGVRGIIPATILAFLEKELQKLDGPDARIADYFDVVAGTSTGG 71
VTVL+IDGGG+RG+IP T+LAFLE ELQ+LDGP AR+ADYFD AG+S G
Sbjct: 35 VTVLTIDGGGIRGVIPGTVLAFLEGELQRLDGPGARLADYFD--AGSSPAG 83
>Os03g0254400 Patatin family protein
Length = 469
Score = 70.5 bits (171), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 21 VTVLSIDGGG--VRGIIPATILAFLEKELQKLDG-PDARIADYFDVVAGTSTGGLLTAML 77
V VL +DGGG +R ++ LA LE L++ G PDAR+ADYFD+VAGT GG+ AML
Sbjct: 75 VCVLCVDGGGGGLRALLSGRALAHLEAALRRASGDPDARVADYFDLVAGTGAGGVFAAML 134
Query: 78 TAPNENNRPLFAADELAKFYIEHSPSIF 105
+ + PLF AD+ + +H+P +F
Sbjct: 135 FSTHSRGAPLFHADDTWRLVADHAPRLF 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,342,850
Number of extensions: 126385
Number of successful extensions: 288
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 13
Length of query: 108
Length of database: 17,035,801
Length adjustment: 76
Effective length of query: 32
Effective length of database: 13,067,537
Effective search space: 418161184
Effective search space used: 418161184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)