Os01g0898500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Patatin (Fragment).
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Os01g0898500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Patatin (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.15 | 0.477 | 5.96 | -2.43 | 0.442 | 1.42 | -1.48 | -2.26 | -0.0316 | 11.9 | 20.4 | 1361 | -- | -- |
| 106.87 | 0.481 | 5.88 | -1.85 | 0.509 | 1.62 | -1.37 | -- | 0.0863 | 11.6 | 16.84 | 1286 | -- | -- |
| 111.07 | 0.491 | 5.98 | -2.64 | 0.429 | 1.41 | -- | -2.61 | -0.0864 | 10.3 | 20.44 | 1506 | -- | -- |
| 113.45 | 0.496 | 5.88 | -1.88 | 0.593 | 1.56 | -- | -- | 0.122 | 10.8 | 17.73 | 1178 | -- | -- |
| 122.35 | 0.515 | 5.98 | -2.52 | -- | 1.37 | -- | -2.29 | -0.0447 | -- | 20.36 | 1521 | -- | -- |
| 159.85 | 0.593 | 5.82 | -1.28 | 0.343 | -- | -1.42 | -- | 0.459 | 11.7 | -- | -- | -- | -- |
| 166.4 | 0.604 | 5.82 | -1.35 | 0.408 | -- | -- | -- | 0.448 | 9.66 | -- | -- | -- | -- |
| 125.7 | 0.522 | 5.9 | -1.9 | -- | 1.72 | -- | -- | 0.13 | -- | 13.87 | 1504 | -- | -- |
| 192.47 | 0.646 | 5.8 | -- | 0.604 | 0.891 | -- | -- | 0.452 | 9.93 | 21.09 | 976 | -- | -- |
| 176.29 | 0.62 | 5.83 | -1.35 | -- | -- | -- | -- | 0.449 | -- | -- | -- | -- | -- |
| 214.28 | 0.685 | 5.78 | -- | 0.412 | -- | -- | -- | 0.598 | 9.91 | -- | -- | -- | -- |
| 204.44 | 0.666 | 5.82 | -- | -- | 0.716 | -- | -- | 0.457 | -- | 21.35 | 1444 | -- | -- |
| 224.46 | 0.699 | 5.79 | -- | -- | -- | -- | -- | 0.599 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 14 | 101.49 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 27 | 101.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 54 | 102.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 56 | 102.27 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 59 | 102.27 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 80 | 102.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 81 | 102.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 87 | 102.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 89 | 102.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 93 | 102.71 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 94 | 102.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 99 | 102.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 114 | 102.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 115 | 102.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 117 | 102.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 124 | 102.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 142 | 102.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 168 | 103.09 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 174 | 103.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 176 | 103.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 178 | 103.14 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 179 | 103.14 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 191 | 103.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 195 | 103.15 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 204 | 103.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 211 | 103.21 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 231 | 103.25 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 237 | 103.27 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 262 | 103.35 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 284 | 103.41 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 286 | 103.41 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 308 | 103.48 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 322 | 103.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 330 | 103.52 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 344 | 103.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 349 | 103.55 | radiation | 1 | 43200 | < th | dose dependent | sin | 11 | NA |
| 373 | 103.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 374 | 103.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 378 | 103.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 385 | 103.64 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 411 | 103.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 419 | 103.68 | wind | 7 | 43200 | < th | dose independent | sin | 0 | NA |
| 433 | 103.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 12 |
| 459 | 103.73 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 463 | 103.74 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 500 | 103.79 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 539 | 103.84 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 560 | 103.86 | wind | 7 | 43200 | > th | dose independent | sin | 0 | NA |
| 606 | 103.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 629 | 103.95 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 21 |
| 630 | 103.95 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 656 | 103.96 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 665 | 103.96 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 724 | 104.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 744 | 104.08 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 747 | 104.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 754 | 104.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 21 |
| 781 | 104.12 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 788 | 104.13 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 814 | 104.16 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 18 |
| 826 | 104.18 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 835 | 104.19 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 853 | 104.21 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 868 | 104.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 17 |
| 874 | 104.22 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 914 | 104.24 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 938 | 104.26 | humidity | 90 | 43200 | > th | dose dependent | sin | 3 | NA |
| 975 | 104.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 3 |