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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0477100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Latex allergen.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0166) R2 : 0.000814
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0214 (0.035) R2dN8 : 0.00105 R2N8 : 0.000814
σ : 0.313
deviance : 45.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.33 0.303 3.2 -0.189 0.141 -0.861 -0.0977 3.65 0.0438 7.33 1000 10 -- --
42.52 0.306 3.15 0.0542 0.139 -0.216 -0.116 -- 0.0435 7.19 1000 10 -- --
42.35 0.305 3.2 -0.196 0.14 -0.874 -- 3.73 0.0442 7.6 999.9 25 -- --
42.55 0.306 3.15 0.0524 0.138 -0.215 -- -- 0.0439 7.5 999.9 25 -- --
43.4 0.309 3.2 -0.172 -- -0.813 -- 3.39 0.0462 -- 999.9 25 -- --
43.8 0.31 3.16 0.0928 0.138 -- -0.103 -- 0.0292 7.35 -- -- -- --
43.82 0.31 3.16 0.091 0.137 -- -- -- 0.0296 7.65 -- -- -- --
43.57 0.309 3.16 0.0546 -- -0.215 -- -- 0.0461 -- 999.9 25 -- --
42.62 0.306 3.15 -- 0.139 -0.224 -- -- 0.0388 7.47 1000 25 -- --
44.83 0.313 3.16 0.0928 -- -- -- -- 0.0317 -- -- -- -- --
44.04 0.31 3.16 -- 0.138 -- -- -- 0.0195 7.61 -- -- -- --
43.64 0.309 3.16 -- -- -0.224 -- -- 0.0408 -- 999.9 25 -- --
45.06 0.313 3.16 -- -- -- -- -- 0.0214 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.40 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 38.95 atmosphere 1005.0 90 > th dose dependent rect. 2 1
4 39.15 atmosphere 1005.0 10 > th dose dependent rect. 2 2
9 39.51 temperature 25.0 90 > th dose independent rect. 1 1
10 39.59 temperature 25.0 90 > th dose dependent rect. 1 2
13 39.62 radiation 1.0 4320 < th dose dependent rect. 3 1
14 39.66 radiation 10.0 43200 < th dose dependent rect. 3 1
19 39.68 wind 9.0 1440 < th dose independent rect. 3 1
20 39.68 temperature 10.0 1440 > th dose independent rect. 3 1
23 39.68 temperature 30.0 1440 < th dose independent rect. 3 1
27 39.68 humidity 50.0 1440 > th dose independent rect. 3 1
36 39.68 atmosphere 995.0 1440 > th dose independent rect. 3 1
37 39.68 radiation 1.0 1440 < th dose independent rect. 3 1
57 39.68 temperature 10.0 1440 > th dose independent rect. 4 23
79 39.72 wind 3.0 30 < th dose independent rect. 2 1
86 39.73 atmosphere 1000.0 30 > th dose independent rect. 2 1
88 39.73 wind 3.0 30 < th dose dependent rect. 2 1
94 39.74 temperature 10.0 30 > th dose independent rect. 2 1
96 39.74 temperature 30.0 30 < th dose independent rect. 2 1
97 39.74 humidity 50.0 30 > th dose independent rect. 2 1
100 39.74 humidity 90.0 30 > th dose independent rect. 2 1
102 39.74 atmosphere 1010.0 30 < th dose independent rect. 2 1
104 39.74 radiation 1.0 30 < th dose independent rect. 2 1
109 39.74 precipitation 0.1 30 < th dose independent rect. 2 1
110 39.74 temperature 10.0 30 > th dose independent rect. 3 23
111 39.74 humidity 50.0 30 > th dose dependent rect. 2 1
115 39.74 radiation 1.0 30 < th dose dependent rect. 2 1
120 39.74 precipitation 0.1 30 < th dose dependent rect. 2 1
122 39.75 atmosphere 1010.0 30 < th dose dependent rect. 2 1
126 39.79 wind 1.0 30 > th dose independent rect. 2 1
128 39.79 temperature 30.0 30 < th dose dependent rect. 2 1
141 39.85 precipitation 0.1 30 < th dose independent rect. 3 23
142 39.85 precipitation 0.1 30 < th dose dependent rect. 3 23
190 40.12 wind 9.0 30 < th dose independent rect. 3 23
211 40.59 humidity 90.0 90 < th dose independent rect. 2 1
238 40.65 humidity 50.0 30 > th dose independent rect. 3 23
246 40.86 atmosphere 995.0 720 > th dose independent rect. 23 16
276 41.37 atmosphere 1000.0 720 > th dose independent rect. 3 8
282 41.42 temperature 30.0 30 < th dose independent rect. 3 23
285 41.43 radiation 20.0 10 < th dose dependent rect. 3 23
291 41.52 precipitation 0.1 720 < th dose independent rect. 15 8
292 41.52 precipitation 0.1 720 < th dose dependent rect. 15 8
302 41.57 temperature 10.0 720 > th dose independent rect. 3 8
303 41.57 temperature 10.0 720 > th dose independent rect. 15 8
305 41.57 atmosphere 1000.0 10 > th dose independent rect. 16 10
306 41.57 temperature 10.0 720 > th dose independent rect. 11 16
307 41.57 temperature 10.0 720 > th dose independent rect. 23 16
308 41.57 radiation 10.0 10 < th dose independent rect. 3 23
312 41.58 atmosphere 995.0 720 > th dose independent rect. 7 8
320 41.61 wind 9.0 720 < th dose independent rect. 3 8
323 41.62 precipitation 0.1 720 < th dose independent rect. 11 16
325 41.62 atmosphere 995.0 30 > th dose independent rect. 23 23
327 41.62 precipitation 0.1 720 < th dose dependent rect. 11 16
354 41.66 atmosphere 1000.0 10 > th dose independent rect. 14 12
360 41.68 temperature 25.0 30 > th dose dependent rect. 22 1
362 41.69 humidity 90.0 30 < th dose dependent rect. 22 1
371 41.73 humidity 90.0 10 < th dose independent rect. 22 1
378 41.75 humidity 50.0 720 > th dose independent rect. 3 8
379 41.75 temperature 15.0 30 > th dose dependent rect. 22 1
382 41.75 atmosphere 995.0 30 > th dose dependent rect. 3 23
385 41.77 temperature 20.0 30 > th dose independent rect. 22 1
391 41.78 wind 1.0 30 > th dose independent rect. 22 1
393 41.79 wind 5.0 30 < th dose independent rect. 22 1
396 41.79 wind 9.0 1440 < th dose independent rect. 23 1
397 41.79 temperature 10.0 30 > th dose independent rect. 22 1
400 41.79 temperature 10.0 1440 > th dose independent rect. 23 1
403 41.79 temperature 30.0 30 < th dose independent rect. 22 1
404 41.79 temperature 30.0 1440 < th dose independent rect. 23 1
408 41.79 humidity 50.0 30 > th dose independent rect. 22 1
411 41.79 humidity 50.0 1440 > th dose independent rect. 23 1
421 41.79 atmosphere 995.0 30 > th dose independent rect. 22 1
422 41.79 atmosphere 1005.0 30 > th dose independent rect. 22 1
423 41.79 atmosphere 995.0 1440 > th dose independent rect. 23 1
424 41.79 atmosphere 1010.0 30 < th dose independent rect. 22 1
426 41.79 radiation 1.0 30 < th dose independent rect. 22 1
431 41.79 radiation 1.0 1440 < th dose independent rect. 23 1
451 41.79 precipitation 0.1 30 < th dose independent rect. 22 1
453 41.79 temperature 10.0 30 > th dose independent rect. 23 23
454 41.79 temperature 10.0 1440 > th dose independent rect. 24 23
458 41.79 wind 9.0 30 < th dose dependent rect. 22 1
460 41.79 atmosphere 1005.0 30 > th dose dependent rect. 22 1
461 41.79 radiation 1.0 30 < th dose dependent rect. 22 1
466 41.79 radiation 1.0 1440 < th dose dependent rect. 23 1
471 41.79 precipitation 0.1 30 < th dose dependent rect. 22 1
492 41.80 atmosphere 995.0 30 > th dose dependent rect. 22 1
500 41.81 atmosphere 1015.0 720 < th dose independent rect. 3 8
505 41.81 atmosphere 1015.0 30 < th dose dependent rect. 22 1
512 41.82 atmosphere 1000.0 10 < th dose independent rect. 7 20
513 41.82 wind 1.0 30 > th dose dependent rect. 22 1
514 41.82 humidity 50.0 30 > th dose dependent rect. 22 1
516 41.83 wind 9.0 720 < th dose independent rect. 15 8
522 41.83 humidity 80.0 14400 < th dose dependent rect. 1 8
528 41.84 atmosphere 1015.0 30 < th dose independent rect. 3 23
532 41.85 atmosphere 995.0 720 > th dose independent rect. 3 23
547 41.88 humidity 60.0 10 > th dose independent rect. 14 12
556 41.90 wind 1.0 30 < th dose independent rect. 21 6
559 41.90 radiation 40.0 720 < th dose independent rect. 15 8
576 41.93 atmosphere 995.0 720 > th dose independent rect. 15 23
582 41.94 atmosphere 1000.0 10 > th dose independent rect. 2 14
583 41.94 atmosphere 1000.0 90 > th dose independent rect. 3 16
586 41.94 temperature 30.0 30 < th dose dependent rect. 22 1
588 41.95 humidity 90.0 720 < th dose independent rect. 1 3
615 41.96 temperature 25.0 720 > th dose dependent rect. 3 5
617 41.96 humidity 50.0 30 > th dose dependent rect. 3 23
623 41.97 humidity 90.0 90 < th dose dependent rect. 2 1
627 41.98 radiation 40.0 30 < th dose independent rect. 14 12
628 41.98 wind 1.0 10 < th dose independent rect. 13 14
644 41.99 atmosphere 1000.0 30 > th dose independent rect. 23 21
646 41.99 atmosphere 1000.0 10 > th dose independent rect. 21 23
648 41.99 wind 5.0 14400 < th dose dependent rect. 10 2
658 42.00 wind 9.0 30 < th dose independent rect. 23 23
661 42.00 temperature 25.0 720 > th dose dependent rect. 6 2
665 42.00 wind 9.0 30 < th dose dependent rect. 3 23
667 42.01 atmosphere 1000.0 10 > th dose independent rect. 2 12
668 42.01 atmosphere 995.0 1440 > th dose independent rect. 3 12
677 42.01 radiation 40.0 10 < th dose dependent rect. 14 12
686 42.02 atmosphere 995.0 90 > th dose dependent rect. 3 16
690 42.03 radiation 20.0 10 < th dose independent rect. 16 10
720 42.04 wind 3.0 14400 > th dose independent rect. 10 2
728 42.04 wind 9.0 720 < th dose independent rect. 19 8
731 42.04 precipitation 0.1 10 < th dose independent rect. 2 14
740 42.04 precipitation 0.1 10 < th dose dependent rect. 2 14
742 42.05 wind 9.0 10 < th dose independent rect. 16 10
745 42.05 atmosphere 1000.0 720 > th dose independent rect. 21 18
750 42.06 temperature 10.0 10 > th dose independent rect. 16 10
751 42.06 humidity 50.0 10 > th dose independent rect. 16 10
755 42.06 temperature 10.0 10 > th dose independent rect. 2 14
757 42.06 atmosphere 1015.0 10 < th dose independent rect. 2 14
762 42.06 radiation 40.0 10 < th dose dependent rect. 16 10
773 42.08 precipitation 0.1 10 < th dose independent rect. 16 10
781 42.08 precipitation 0.1 10 < th dose dependent rect. 16 10
782 42.09 atmosphere 995.0 720 > th dose independent rect. 14 1
792 42.09 wind 5.0 10 < th dose dependent rect. 20 8
795 42.10 humidity 50.0 10 > th dose independent rect. 2 14
805 42.11 wind 3.0 14400 < th dose independent rect. 10 2
811 42.11 radiation 10.0 10 < th dose independent rect. 14 12
814 42.11 wind 1.0 10 < th dose independent rect. 6 21
826 42.12 wind 9.0 720 < th dose independent rect. 15 16
831 42.12 wind 3.0 30 < th dose dependent rect. 22 5
836 42.13 temperature 10.0 1440 > th dose independent rect. 17 10
839 42.13 radiation 30.0 1440 < th dose independent rect. 17 10
848 42.13 temperature 10.0 1440 > th dose independent rect. 3 14
865 42.14 precipitation 0.1 720 < th dose independent rect. 15 16
868 42.14 precipitation 0.1 720 < th dose dependent rect. 15 16
871 42.15 humidity 90.0 10 > th dose independent rect. 24 3
883 42.16 temperature 10.0 720 > th dose independent rect. 7 8
884 42.16 atmosphere 1015.0 720 < th dose independent rect. 7 8
885 42.16 precipitation 0.1 720 < th dose independent rect. 19 8
886 42.16 temperature 10.0 720 > th dose independent rect. 15 16
893 42.16 precipitation 0.1 720 < th dose dependent rect. 19 8
896 42.16 atmosphere 1000.0 10 < th dose dependent rect. 7 20
898 42.17 temperature 10.0 720 > th dose independent rect. 19 8
899 42.17 temperature 30.0 720 < th dose independent rect. 19 8
900 42.17 humidity 50.0 720 > th dose independent rect. 19 8
901 42.17 atmosphere 995.0 720 > th dose independent rect. 19 8
902 42.17 radiation 1.0 720 < th dose independent rect. 19 8
907 42.17 temperature 10.0 720 > th dose independent rect. 3 16
912 42.17 radiation 1.0 720 < th dose dependent rect. 19 8
919 42.18 wind 9.0 10 < th dose independent rect. 2 14
922 42.18 atmosphere 1000.0 10 > th dose independent rect. 10 23
933 42.19 temperature 30.0 10 < th dose independent rect. 16 10
938 42.19 wind 1.0 90 > th dose independent rect. 3 23
953 42.20 atmosphere 1000.0 720 > th dose independent rect. 21 14
982 42.22 atmosphere 1000.0 720 > th dose independent rect. 3 6
984 42.22 precipitation 0.1 720 < th dose independent rect. 3 8
986 42.22 wind 9.0 30 < th dose independent rect. 14 12
987 42.22 temperature 10.0 10 > th dose independent rect. 2 12
989 42.22 temperature 10.0 10 > th dose independent rect. 14 12
991 42.22 atmosphere 1015.0 10 < th dose independent rect. 2 12
993 42.22 precipitation 0.1 10 < th dose independent rect. 2 12
999 42.22 wind 1.0 14400 > th dose dependent rect. 11 1