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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0552200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Patatin-like protein 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0532) R2 : -0.691
β1 : 0.406 (0.195) R2dD : 0.0233 R2D : 0.0184
β2 : 0.117 (0.132) R2dC : -0.0134 R2C : 0.000861
β3 : 1.75 (0.182) R2dE : -0.234 R2E : -0.186
β4 : 0.0935 (0.511) R2dD*C : 0.00359 R2D*C : -0.00322
β5 : -8.76 (0.716) R2dD*E : -0.529 R2D*E : -0.502
γ1 : -0.156 (0.114) R2dN8 : 0.0132 R2N8 : 0.0138
σ : 0.714
deviance : 230.83
__
_____
C
peak time of C : 13.5
E
wheather : humidity
threshold : 4
memory length : 1
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
230.83 0.714 3.08 0.406 0.117 1.75 0.0935 -8.76 -0.156 13.5 4 1 10 1
252.38 0.746 3.07 0.416 0.104 0.577 0.0497 -- -0.135 16.9 26.28 2 10 0.983
253.31 0.747 3.08 0.418 0.0944 0.446 -- -0.592 -0.179 16.8 4 1 10 1
251.16 0.743 3.07 0.407 0.105 0.64 -- -- -0.135 16.9 59.81 2 9.92 0.901
250.19 0.741 3.07 0.42 -- 0.654 -- -0.937 -0.131 -- 59.01 2 9.93 0.927
259.69 0.755 3.08 0.412 0.139 -- -0.075 -- -0.18 12.7 -- -- -- --
259.72 0.755 3.08 0.409 0.139 -- -- -- -0.18 12.8 -- -- -- --
251.74 0.742 3.07 0.403 -- 0.629 -- -- -0.138 -- 59.79 2 9.91 0.926
255.53 0.749 3.08 -- 0.098 0.642 -- -- -0.18 17 59.02 2 9.59 1.19
260.93 0.755 3.08 0.404 -- -- -- -- -0.182 -- -- -- -- --
264.13 0.76 3.09 -- 0.133 -- -- -- -0.225 12.7 -- -- -- --
256.03 0.748 3.08 -- -- 0.629 -- -- -0.183 -- 59.79 2 9.91 0.926
265.24 0.76 3.09 -- -- -- -- -- -0.227 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.83 humidity 80.0 10 > th dose independent rect. 10 1
3 231.52 humidity 80.0 10 > th dose dependent rect. 10 1
5 232.14 atmosphere 1005.0 90 < th dose dependent rect. 8 1
33 241.87 temperature 25.0 10 < th dose independent rect. 10 1
35 242.26 humidity 70.0 90 < th dose independent rect. 8 1
75 244.13 humidity 80.0 90 < th dose dependent rect. 8 1
80 244.49 atmosphere 1005.0 90 < th dose independent rect. 8 1
81 244.52 humidity 80.0 90 < th dose dependent rect. 2 7
88 245.46 wind 3.0 90 < th dose independent rect. 1 13
94 245.75 atmosphere 1005.0 270 < th dose dependent rect. 6 1
122 246.48 humidity 80.0 90 < th dose dependent rect. 20 13
123 246.54 wind 3.0 90 > th dose independent rect. 2 11
139 246.71 wind 5.0 90 < th dose dependent rect. 1 13
140 246.74 atmosphere 1005.0 10 < th dose independent rect. 8 2
158 247.14 wind 5.0 43200 < th dose independent rect. 10 6
160 247.16 wind 5.0 43200 < th dose independent rect. 8 9
162 247.18 wind 5.0 43200 > th dose independent rect. 10 6
163 247.19 wind 7.0 90 > th dose independent rect. 7 2
167 247.19 radiation 1.0 43200 < th dose dependent rect. 1 3
172 247.23 wind 7.0 90 > th dose dependent rect. 7 2
176 247.25 wind 5.0 43200 > th dose independent rect. 9 8
179 247.27 wind 7.0 90 > th dose independent rect. 2 7
180 247.28 wind 7.0 90 > th dose dependent rect. 2 7
184 247.31 wind 5.0 43200 < th dose independent rect. 11 4
189 247.35 wind 5.0 43200 > th dose independent rect. 7 11
192 247.36 atmosphere 1010.0 720 > th dose independent rect. 22 4
203 247.40 atmosphere 1010.0 720 > th dose independent rect. 23 2
206 247.44 wind 5.0 43200 > th dose independent rect. 13 1
208 247.46 wind 5.0 43200 > th dose independent sin 23 NA
209 247.46 wind 5.0 43200 < th dose independent sin 23 NA
232 247.60 wind 3.0 270 < th dose dependent rect. 7 1
237 247.62 wind 3.0 270 > th dose independent rect. 5 5
250 247.67 wind 5.0 43200 > th dose independent rect. 9 16
257 247.70 wind 3.0 270 > th dose independent rect. 2 8
302 247.79 wind 3.0 90 > th dose independent rect. 5 8
334 247.83 wind 5.0 43200 < th dose independent rect. 13 1
357 247.87 temperature 25.0 1440 < th dose independent rect. 17 1
366 247.89 temperature 25.0 1440 > th dose independent rect. 17 1
406 247.95 wind 5.0 43200 < th dose independent rect. 11 21
426 247.98 wind 5.0 43200 < th dose independent rect. 24 19
453 248.03 wind 3.0 43200 < th dose dependent rect. 9 1
454 248.03 wind 3.0 1440 < th dose dependent rect. 3 3
476 248.07 temperature 30.0 10 < th dose dependent rect. 19 16
481 248.08 atmosphere 995.0 43200 > th dose independent rect. 14 19
483 248.08 wind 3.0 1440 < th dose dependent rect. 23 7
503 248.12 precipitation 0.1 10 > th dose independent rect. 19 1
520 248.12 precipitation 0.1 10 > th dose dependent rect. 19 1
545 248.15 precipitation 0.1 90 > th dose independent rect. 18 5
559 248.17 atmosphere 995.0 43200 < th dose dependent rect. 15 8
566 248.19 atmosphere 995.0 43200 < th dose independent rect. 14 19
579 248.21 atmosphere 995.0 43200 < th dose independent rect. 14 12
595 248.24 atmosphere 995.0 43200 > th dose independent rect. 12 1
598 248.24 atmosphere 995.0 43200 > th dose independent rect. 14 13
599 248.24 atmosphere 995.0 43200 > th dose independent rect. 13 15
657 248.28 wind 1.0 720 > th dose dependent rect. 1 5
688 248.32 atmosphere 995.0 43200 > th dose independent sin 16 NA
713 248.35 wind 3.0 90 < th dose independent rect. 1 17
725 248.38 atmosphere 995.0 43200 < th dose independent rect. 10 5
743 248.40 atmosphere 995.0 43200 < th dose independent sin 16 NA
783 248.43 wind 5.0 43200 < th dose independent no NA NA
802 248.47 wind 9.0 43200 < th dose independent rect. 18 3
812 248.48 atmosphere 995.0 43200 < th dose dependent rect. 13 3
830 248.53 atmosphere 1000.0 43200 < th dose dependent rect. 4 4
832 248.54 wind 5.0 43200 > th dose independent no NA NA
843 248.55 atmosphere 1000.0 43200 < th dose dependent rect. 2 7
852 248.57 wind 3.0 43200 > th dose dependent rect. 9 7
860 248.58 wind 1.0 43200 < th dose dependent rect. 20 1
861 248.58 atmosphere 1000.0 43200 < th dose dependent rect. 6 1
863 248.59 atmosphere 1000.0 43200 < th dose dependent rect. 1 9
875 248.61 wind 9.0 43200 > th dose dependent rect. 18 5
877 248.62 atmosphere 995.0 43200 > th dose independent rect. 10 5
888 248.63 wind 9.0 43200 > th dose independent rect. 18 3
890 248.63 wind 9.0 1440 < th dose dependent rect. 2 4
903 248.66 wind 1.0 270 > th dose dependent rect. 5 5
907 248.67 wind 1.0 720 > th dose dependent rect. 4 1
945 248.73 wind 1.0 270 > th dose dependent rect. 3 7
980 248.79 temperature 25.0 1440 < th dose independent rect. 16 9
1000 248.82 wind 3.0 90 > th dose independent sin 5 NA