FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0614400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Patatin-like protein 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.12 (0.0624) R2 : 0.546
β1 : -5.69 (0.278) R2dD : 0.747 R2D : 0.252
β2 : 0.707 (0.14) R2dC : 0.0267 R2C : -0.0122
β3 : -2.34 (0.251) R2dE : 0.11 R2E : -0.0702
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.38 (0.955) R2dD*E : 0.0543 R2D*E : -0.199
γ1 : -1.32 (0.141) R2dN8 : 0.151 R2N8 : -0.0975
σ : 1.08
deviance : 537.99
__
_____
C
peak time of C : 10.2
E
wheather : temperature
threshold : 28.8
memory length : 202
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
535.07 1.09 6.13 -5.75 0.664 -2.36 0.976 5.59 -1.32 10.4 28.8 167 -- --
559.06 1.1 5.99 -4.81 0.944 -2.91 0.0368 -- -1.03 12 23.87 335 -- --
537.99 1.08 6.12 -5.69 0.707 -2.34 -- 5.38 -1.32 10.2 28.8 202 -- --
558.54 1.1 6 -4.81 0.92 -2.76 -- -- -1.04 12 24.09 333 -- --
558.45 1.11 6.12 -5.51 -- -2.57 -- 4.53 -1.29 -- 28.92 123 -- --
660.77 1.21 5.9 -4.11 1.05 -- -0.265 -- -0.557 13 -- -- -- --
661.05 1.2 5.9 -4.12 1.05 -- -- -- -0.559 12.9 -- -- -- --
587.75 1.13 6.04 -4.76 -- -2.66 -- -- -1.14 -- 27.5 53 -- --
1101.17 1.55 5.82 -- 1.08 -0.709 -- -- -0.214 12.9 24.21 299 -- --
729.24 1.26 5.92 -4.16 -- -- -- -- -0.579 -- -- -- -- --
1108.04 1.56 5.8 -- 1.11 -- -- -- -0.0999 13.1 -- -- -- --
1147.05 1.58 5.86 -- -- -1.31 -- -- -0.338 -- 29.1 10 -- --
1185.12 1.61 5.81 -- -- -- -- -- -0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 526.02 temperature 25 270 < th dose dependent sin 23 NA
3 526.16 temperature 25 270 < th dose dependent rect. 4 17
4 526.58 temperature 25 270 < th dose dependent rect. 5 15
9 530.21 temperature 25 270 < th dose dependent rect. 22 22
18 532.92 temperature 25 270 < th dose dependent rect. 1 22
24 533.54 temperature 30 90 < th dose dependent rect. 17 23
33 534.68 temperature 30 90 < th dose dependent rect. 5 23
38 535.02 temperature 30 10 < th dose dependent rect. 18 22
47 535.83 temperature 30 270 < th dose dependent rect. 3 23
61 538.18 temperature 30 270 < th dose dependent no NA NA
62 538.18 temperature 15 270 > th dose dependent rect. 24 23
68 539.20 temperature 30 30 < th dose dependent rect. 15 23
70 539.33 temperature 30 30 < th dose dependent no NA NA
72 539.37 temperature 15 270 > th dose dependent rect. 22 23
81 539.77 temperature 30 270 < th dose dependent rect. 15 23
83 539.90 temperature 15 270 > th dose dependent rect. 20 23
86 540.07 temperature 30 30 < th dose dependent rect. 9 23
87 540.08 temperature 30 30 < th dose dependent rect. 11 23
94 540.15 temperature 30 30 < th dose dependent rect. 13 23
107 540.95 temperature 25 10 < th dose dependent sin 22 NA
120 541.60 temperature 15 30 > th dose dependent no NA NA
122 541.72 wind 5 43200 > th dose dependent rect. 18 3
149 542.69 wind 7 43200 > th dose independent rect. 18 3
163 543.34 wind 7 43200 < th dose independent rect. 18 3
169 543.67 temperature 25 10 < th dose dependent rect. 6 14
186 544.51 wind 7 43200 > th dose independent rect. 20 1
187 544.54 temperature 30 10 < th dose dependent rect. 23 23
221 545.85 temperature 15 270 > th dose dependent rect. 7 23
271 547.70 temperature 15 10 > th dose dependent rect. 1 23
272 547.73 temperature 15 270 > th dose dependent rect. 3 23
273 547.76 temperature 15 270 > th dose dependent rect. 13 23
292 548.28 temperature 30 30 < th dose dependent rect. 1 23
295 548.40 wind 9 270 > th dose independent rect. 19 15
306 548.67 temperature 30 10 < th dose dependent rect. 7 23
334 549.72 temperature 30 270 < th dose dependent rect. 11 23
364 550.25 wind 7 43200 > th dose independent rect. 18 8
408 551.14 temperature 15 270 > th dose dependent rect. 10 23
434 551.41 wind 9 270 > th dose dependent rect. 19 15
438 551.48 wind 9 43200 < th dose independent rect. 17 8
440 551.49 temperature 10 720 > th dose dependent rect. 20 16
499 552.11 temperature 10 270 > th dose dependent sin 2 NA
500 552.11 temperature 25 10 < th dose dependent rect. 6 10
502 552.12 radiation 30 14400 < th dose independent rect. 16 15
565 552.91 radiation 1 4320 > th dose independent rect. 4 1
575 552.91 radiation 1 4320 > th dose dependent rect. 4 1
596 553.01 wind 7 43200 > th dose dependent rect. 17 13
597 553.02 temperature 15 270 > th dose dependent rect. 1 17
667 553.85 wind 9 43200 < th dose independent rect. 17 13
678 553.98 wind 9 43200 > th dose independent rect. 17 13
690 554.07 temperature 20 270 > th dose independent sin 0 NA
747 554.59 radiation 10 14400 < th dose independent rect. 17 13
829 555.17 wind 9 43200 < th dose dependent rect. 18 3
831 555.18 humidity 50 14400 < th dose independent rect. 12 1
835 555.22 wind 7 43200 > th dose independent sin 13 NA
854 555.45 radiation 40 14400 < th dose independent rect. 15 13
863 555.50 radiation 40 14400 < th dose independent rect. 15 6
880 555.64 wind 7 43200 < th dose independent sin 13 NA
900 555.78 wind 5 43200 > th dose dependent rect. 24 1
968 556.18 wind 9 43200 < th dose dependent rect. 20 1
979 556.33 radiation 40 14400 < th dose independent rect. 15 1