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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0393900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to S.tuberosum patatin (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0281) R2 : 0.00513
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0907 (0.0591) R2dN8 : 0.00663 R2N8 : 0.00513
σ : 0.529
deviance : 128.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.91 0.523 2.89 -0.134 0.0352 1.19 -0.289 3.25 0.0755 10.7 1015 718 -- --
125.78 0.526 2.88 -0.115 0.0269 0.661 -0.345 -- 0.0851 10.9 1015 718 -- --
124.24 0.519 2.89 -0.143 0.0369 1.12 -- 3.04 0.0718 10.3 1015 706 -- --
126.28 0.527 2.88 -0.129 0.0298 0.665 -- -- 0.0839 10.1 1015 718 -- --
124.31 0.519 2.89 -0.15 -- 0.969 -- 2.81 0.0763 -- 1015 667 -- --
127.48 0.529 2.88 -0.115 0.0053 -- -0.352 -- 0.0776 10.9 -- -- -- --
128 0.53 2.88 -0.13 0.0142 -- -- -- 0.0761 7.11 -- -- -- --
126.33 0.526 2.88 -0.129 -- 0.651 -- -- 0.0837 -- 1014 262 -- --
126.13 0.523 2.88 -- 0.0142 0.866 -- -- 0.101 15.4 1016 34 -- --
128.01 0.529 2.88 -0.129 -- -- -- -- 0.0763 -- -- -- -- --
128.44 0.53 2.87 -- 0.013 -- -- -- 0.0905 7.75 -- -- -- --
126.11 0.523 2.87 -- -- 0.917 -- -- 0.099 -- 1016 34 -- --
128.45 0.529 2.87 -- -- -- -- -- 0.0907 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 117.40 wind 5 10 > th dose dependent rect. 7 4
9 117.60 wind 7 10 > th dose independent rect. 9 2
14 117.61 wind 7 10 > th dose dependent rect. 9 2
214 121.67 humidity 90 90 > th dose independent rect. 8 2
218 121.70 humidity 90 90 > th dose dependent rect. 8 2
228 121.91 radiation 10 90 < th dose dependent rect. 8 1
247 122.31 radiation 10 90 < th dose independent rect. 8 1
248 122.31 wind 7 90 > th dose dependent rect. 23 11
249 122.33 atmosphere 1015 30 < th dose independent rect. 23 23
266 122.75 wind 9 90 > th dose dependent rect. 21 13
307 123.09 atmosphere 1015 720 < th dose independent rect. 18 23
308 123.10 atmosphere 1015 720 < th dose independent rect. 23 8
319 123.20 temperature 30 10 > th dose independent rect. 10 1
324 123.25 atmosphere 1015 720 < th dose independent rect. 13 9
326 123.27 temperature 20 90 < th dose dependent rect. 10 14
330 123.30 atmosphere 1015 720 < th dose independent rect. 10 15
331 123.31 temperature 20 90 < th dose dependent sin 20 NA
347 123.38 atmosphere 1015 720 < th dose independent rect. 20 15
361 123.51 atmosphere 1015 90 < th dose independent rect. 13 14
367 123.53 temperature 20 90 < th dose dependent rect. 14 10
386 123.61 temperature 25 90 > th dose independent rect. 4 1
388 123.62 temperature 25 90 > th dose dependent rect. 4 1
392 123.63 temperature 25 10 > th dose independent rect. 4 1
398 123.64 temperature 20 90 < th dose dependent rect. 21 2
404 123.67 atmosphere 1015 720 < th dose independent rect. 4 23
416 123.70 atmosphere 1015 720 < th dose independent rect. 5 17
429 123.73 atmosphere 1015 720 < th dose independent rect. 13 17
449 123.80 atmosphere 1015 1440 < th dose independent rect. 23 5
452 123.81 atmosphere 1015 1440 < th dose independent rect. 23 10
467 123.84 atmosphere 1015 1440 > th dose independent rect. 23 2
472 123.85 atmosphere 1015 30 < th dose independent rect. 13 23
484 123.86 atmosphere 1015 720 < th dose independent rect. 9 23
485 123.86 atmosphere 1015 1440 > th dose dependent rect. 23 2
517 123.91 atmosphere 1015 720 < th dose independent rect. 18 7
529 123.91 atmosphere 1015 720 > th dose independent rect. 3 18
533 123.91 atmosphere 1015 720 > th dose independent rect. 1 21
538 123.91 atmosphere 1015 720 > th dose dependent sin 9 NA
544 123.91 atmosphere 1015 720 > th dose dependent sin 0 NA
545 123.91 atmosphere 1015 720 > th dose dependent no NA NA
661 123.91 atmosphere 1015 720 > th dose dependent rect. 2 20
693 123.91 atmosphere 1015 720 > th dose dependent rect. 1 22
711 123.91 atmosphere 1015 720 > th dose dependent rect. 3 23
730 123.92 atmosphere 1015 720 > th dose dependent sin 7 NA
793 123.93 atmosphere 1015 720 > th dose independent sin 7 NA
796 123.93 atmosphere 1015 720 > th dose independent sin 5 NA
801 123.93 atmosphere 1015 90 < th dose independent rect. 9 23
817 123.94 atmosphere 1015 720 > th dose independent sin 3 NA
819 123.94 atmosphere 1015 720 < th dose independent sin 7 NA
820 123.94 humidity 90 10 < th dose independent rect. 4 1
826 123.94 atmosphere 1015 720 > th dose dependent sin 3 NA
834 123.94 atmosphere 1015 720 > th dose dependent rect. 3 18
837 123.95 atmosphere 1015 720 > th dose independent sin 0 NA
845 123.95 atmosphere 1015 720 > th dose independent rect. 21 7
887 123.96 atmosphere 1015 720 > th dose independent no NA NA