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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0462400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Patatin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.72 (0.0426) R2 : 0.647
β1 : -2.18 (0.156) R2dD : 0.157 R2D : 0.146
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.81 (0.113) R2dE : 0.484 R2E : 0.468
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.277 (0.0912) R2dN8 : 0.0101 R2N8 : 0.0281
σ : 0.797
deviance : 292.98
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 41.26
memory length : 303
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.111
open length of G : 6.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
271.64 0.774 4.76 -2.34 0.727 3.01 -0.404 -1.89 0.189 20.9 48.65 279 0.0318 7.32
278.92 0.778 4.75 -2.19 0.794 3.08 0.596 -- 0.203 20.4 45.94 280 0.1 7.25
271.98 0.768 4.76 -2.3 0.741 3.02 -- -1.66 0.19 20.8 46.69 280 0.0332 7.31
279.39 0.778 4.75 -2.19 0.703 2.93 -- -- 0.21 21.1 41.08 284 0.0833 7.17
291.21 0.795 4.74 -2.24 -- 2.65 -- -1.33 0.266 -- 58.76 250 0.183 7.15
414.37 0.954 4.66 -2.07 2.29 -- -1.15 -- 0.379 4.93 -- -- -- --
417.76 0.957 4.66 -2.06 2.28 -- -- -- 0.384 4.93 -- -- -- --
292.98 0.797 4.72 -2.18 -- 2.81 -- -- 0.277 -- 41.26 303 0.111 6.03
405.88 0.938 4.7 -- 0.715 2.88 -- -- 0.458 20.8 34.23 279 0.147 7.27
691.96 1.23 4.68 -1.98 -- -- -- -- 0.443 -- -- -- -- --
530.01 1.08 4.61 -- 2.24 -- -- -- 0.614 4.96 -- -- -- --
415.84 0.95 4.66 -- -- 2.83 -- -- 0.548 -- 40.92 331 0.0112 5.67
795.37 1.32 4.63 -- -- -- -- -- 0.663 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.81 humidity 50.0 270 > th dose dependent rect. 24 7
2 275.38 temperature 15.0 270 > th dose independent rect. 1 18
5 276.17 wind 9.0 270 < th dose dependent rect. 24 7
7 277.51 temperature 10.0 270 > th dose dependent rect. 24 8
8 277.72 radiation 40.0 270 < th dose dependent rect. 24 8
9 277.85 wind 7.0 270 < th dose independent rect. 18 7
12 278.49 wind 9.0 270 < th dose independent rect. 7 17
15 279.07 radiation 20.0 270 < th dose independent rect. 24 8
17 279.32 radiation 1.0 270 < th dose dependent rect. 17 8
19 279.49 precipitation 0.1 270 < th dose independent rect. 24 7
20 279.49 precipitation 0.1 270 < th dose dependent rect. 24 7
25 280.68 humidity 70.0 270 > th dose independent rect. 24 7
26 280.88 temperature 15.0 270 > th dose independent rect. 24 7
29 280.93 temperature 30.0 270 < th dose independent rect. 24 7
30 280.93 humidity 50.0 270 > th dose independent rect. 24 7
32 280.93 atmosphere 995.0 270 > th dose independent rect. 24 7
34 280.93 temperature 10.0 270 > th dose independent rect. 7 17
35 280.94 wind 9.0 270 < th dose independent rect. 24 7
36 280.98 atmosphere 1015.0 270 < th dose independent rect. 24 7
37 281.02 atmosphere 1010.0 270 < th dose independent rect. 11 9
39 281.32 wind 1.0 90 > th dose independent rect. 21 16
44 281.81 wind 1.0 270 > th dose independent rect. 19 17
45 281.87 temperature 15.0 90 > th dose independent rect. 3 17
52 282.65 precipitation 0.1 270 < th dose independent rect. 1 18
53 282.65 precipitation 0.1 270 < th dose dependent rect. 1 18
54 282.73 precipitation 0.1 270 < th dose independent rect. 7 17
55 282.73 precipitation 0.1 270 < th dose dependent rect. 7 17
59 283.15 temperature 15.0 270 > th dose independent rect. 11 9
75 283.44 radiation 1.0 270 < th dose independent rect. 17 8
78 283.54 wind 9.0 270 < th dose dependent rect. 18 7
87 284.13 temperature 10.0 270 > th dose dependent rect. 1 18
88 284.21 wind 3.0 90 < th dose dependent rect. 3 6
92 284.47 precipitation 0.1 270 < th dose independent rect. 19 6
93 284.47 precipitation 0.1 270 < th dose dependent rect. 19 6
98 284.64 temperature 10.0 270 > th dose independent rect. 19 6
99 284.64 temperature 30.0 270 < th dose independent rect. 19 6
100 284.64 humidity 50.0 270 > th dose independent rect. 19 6
101 284.64 atmosphere 995.0 270 > th dose independent rect. 19 6
108 284.64 atmosphere 1015.0 270 < th dose independent rect. 1 18
144 285.58 temperature 10.0 270 > th dose independent rect. 20 16
145 285.58 atmosphere 995.0 270 > th dose independent rect. 20 16
148 285.70 radiation 1.0 270 < th dose dependent rect. 7 18
159 285.93 radiation 1.0 270 < th dose dependent rect. 5 20
160 285.94 precipitation 0.1 270 < th dose independent rect. 12 7
161 285.94 precipitation 0.1 270 < th dose dependent rect. 12 7
170 286.25 atmosphere 995.0 270 > th dose independent rect. 1 18
171 286.26 wind 1.0 270 > th dose independent rect. 12 7
181 286.72 wind 9.0 270 < th dose independent rect. 20 16
195 287.55 atmosphere 995.0 270 > th dose independent rect. 12 7
201 287.90 precipitation 0.1 270 < th dose independent rect. 20 16
203 287.90 precipitation 0.1 270 < th dose dependent rect. 20 16
210 288.28 humidity 50.0 270 > th dose independent rect. 19 17
211 288.35 atmosphere 1010.0 90 < th dose independent rect. 3 17
218 288.53 humidity 50.0 30 > th dose dependent rect. 3 8
221 288.71 humidity 50.0 90 > th dose dependent rect. 19 8
253 289.30 wind 9.0 270 < th dose independent rect. 1 18
256 289.41 wind 1.0 270 > th dose independent rect. 19 6
259 289.53 temperature 10.0 90 > th dose dependent rect. 3 17
272 289.98 atmosphere 1015.0 270 < th dose independent rect. 7 17
280 290.15 wind 1.0 270 > th dose independent rect. 7 17
287 290.49 wind 1.0 270 > th dose independent rect. 5 8
292 290.58 precipitation 0.1 90 < th dose independent rect. 3 17
293 290.58 precipitation 0.1 90 < th dose dependent rect. 3 17
311 290.71 radiation 1.0 270 < th dose independent rect. 8 17
330 291.16 humidity 50.0 270 > th dose independent rect. 7 17
337 291.30 humidity 50.0 270 > th dose dependent rect. 19 6
363 291.59 wind 9.0 90 < th dose independent rect. 3 16
368 291.72 wind 9.0 270 < th dose independent rect. 12 7
371 291.82 temperature 10.0 270 > th dose independent rect. 6 7
372 291.82 atmosphere 995.0 270 > th dose independent rect. 6 7
373 291.82 atmosphere 1015.0 270 < th dose independent rect. 6 7
374 291.82 temperature 10.0 270 > th dose independent rect. 13 17
378 291.88 atmosphere 995.0 90 > th dose independent rect. 3 16
382 291.94 temperature 10.0 270 > th dose dependent rect. 12 8
403 292.05 radiation 40.0 90 < th dose dependent rect. 3 7
411 292.20 wind 5.0 10 < th dose dependent rect. 3 6
412 292.25 atmosphere 1015.0 270 < th dose independent rect. 19 6
435 292.54 precipitation 0.1 270 < th dose independent rect. 6 7
437 292.54 precipitation 0.1 270 < th dose dependent rect. 6 7
451 292.78 wind 3.0 270 < th dose independent rect. 1 5
463 293.04 precipitation 0.1 270 < th dose independent rect. 13 17
464 293.04 precipitation 0.1 270 < th dose dependent rect. 13 17
478 293.51 humidity 50.0 270 > th dose independent rect. 6 7
482 293.62 wind 9.0 270 < th dose independent rect. 6 7
509 294.21 atmosphere 995.0 270 > th dose independent rect. 7 17
539 294.38 atmosphere 1015.0 270 < th dose dependent rect. 1 5
542 294.44 temperature 10.0 270 > th dose dependent rect. 12 18
548 294.51 atmosphere 995.0 270 > th dose independent rect. 13 17
586 295.45 wind 9.0 10 < th dose dependent rect. 20 7
588 295.51 humidity 50.0 270 > th dose independent rect. 6 19
591 295.60 radiation 40.0 270 < th dose independent rect. 13 17
595 295.76 atmosphere 1015.0 270 < th dose independent rect. 19 17
622 296.29 temperature 10.0 10 > th dose dependent rect. 3 18
625 296.40 atmosphere 1015.0 270 < th dose dependent rect. 24 7
626 296.41 precipitation 0.1 10 < th dose independent rect. 20 7
627 296.41 precipitation 0.1 10 < th dose dependent rect. 20 7
639 296.61 precipitation 0.1 10 < th dose independent rect. 3 17
641 296.61 precipitation 0.1 10 < th dose dependent rect. 3 17
676 296.99 humidity 50.0 10 > th dose dependent rect. 20 7
677 297.09 atmosphere 1010.0 90 < th dose independent rect. 3 6
757 297.89 humidity 90.0 270 < th dose independent rect. 12 7
804 298.38 wind 9.0 270 < th dose independent rect. 13 17
818 298.58 wind 3.0 270 < th dose dependent rect. 3 2
852 299.01 atmosphere 995.0 10 > th dose independent rect. 3 17
871 299.15 temperature 10.0 10 > th dose independent rect. 20 7
872 299.15 temperature 30.0 10 < th dose independent rect. 20 7
873 299.15 humidity 50.0 10 > th dose independent rect. 20 7
876 299.15 atmosphere 995.0 10 > th dose independent rect. 20 7
877 299.15 radiation 1.0 10 < th dose independent rect. 20 7
882 299.15 temperature 10.0 10 > th dose independent rect. 3 17
885 299.15 radiation 1.0 10 < th dose dependent rect. 20 7
902 299.39 atmosphere 995.0 270 > th dose dependent rect. 12 7
913 299.55 wind 9.0 10 < th dose independent rect. 3 17
971 300.24 wind 3.0 270 < th dose independent rect. 2 3