BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0461700 Os08g0461700|AK069998
(256 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0461700 Conserved hypothetical protein 494 e-140
Os08g0461800 Conserved hypothetical protein 256 8e-69
Os08g0461400 Conserved hypothetical protein 133 1e-31
Os08g0461300 Cyclin-like F-box domain containing protein 124 7e-29
Os08g0461100 Leucine-rich repeat 2 containing protein 124 8e-29
Os08g0461000 Cyclin-like F-box domain containing protein 120 1e-27
Os09g0443000 Cyclin-like F-box domain containing protein 119 2e-27
Os08g0462300 Cyclin-like F-box domain containing protein 117 1e-26
Os08g0460900 Cyclin-like F-box domain containing protein 103 1e-22
Os08g0462200 82 4e-16
Os08g0267600 72 5e-13
Os08g0267000 Cyclin-like F-box domain containing protein 66 2e-11
>Os08g0461700 Conserved hypothetical protein
Length = 256
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/256 (94%), Positives = 243/256 (94%)
Query: 1 MVNLPEHGESTLEAMIXXXXXXXXXXXXXVCTDGNQMDEWVIRAPNLKHLTIESDYDYLW 60
MVNLPEHGESTLEAMI VCTDGNQMDEWVIRAPNLKHLTIESDYDYLW
Sbjct: 1 MVNLPEHGESTLEAMISLSLLLEWLDLRSVCTDGNQMDEWVIRAPNLKHLTIESDYDYLW 60
Query: 61 RVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSMLELHLLATEDNALDGLSCSLEKLK 120
RVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSMLELHLLATEDNALDGLSCSLEKLK
Sbjct: 61 RVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSMLELHLLATEDNALDGLSCSLEKLK 120
Query: 121 SLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSEFPQNDEIDAEFFNTLETNDLFT 180
SLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSEFPQNDEIDAEFFNTLETNDLFT
Sbjct: 121 SLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSEFPQNDEIDAEFFNTLETNDLFT 180
Query: 181 NLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWVFRDDSNSLSKPSEEAVIEIAKYRRA 240
NLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWVFRDDSNSLSKPSEEAVIEIAKYRRA
Sbjct: 181 NLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWVFRDDSNSLSKPSEEAVIEIAKYRRA 240
Query: 241 SPKSRVFFRSMEDYYI 256
SPKSRVFFRSMEDYYI
Sbjct: 241 SPKSRVFFRSMEDYYI 256
>Os08g0461800 Conserved hypothetical protein
Length = 243
Score = 256 bits (655), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 121/222 (54%), Positives = 167/222 (75%), Gaps = 1/222 (0%)
Query: 35 NQMDEWVIRAPNLKHLTIESDYDYLWRVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQV 94
+ ++W+I+APNL+ LTI SD DY W++++LPS+Q A + ++D S DRDFV+LLT AQV
Sbjct: 21 DDFEDWIIQAPNLERLTITSDIDYGWQIQDLPSIQDANINIEDYSIDRDFVKLLTSLAQV 80
Query: 95 SMLELHLLATEDNALDGLSCSLEKLKSLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEI 154
LEL + + + N L+G+SCS +KL+SLTLH NF SSIL F LL R PN+ L+IEI
Sbjct: 81 GELELFIPSADGNVLEGISCSFQKLRSLTLHTNFYKASSILSTFGLLTRAPNLLHLEIEI 140
Query: 155 MGSEFPQNDEIDAEFFNTLETNDLFTNLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFW 214
E Q+DE+D +F N L TN LF NLD +++++A C SN+M FIEFVLS+ RLL +F+
Sbjct: 141 TDHE-NQSDEVDIDFLNALWTNSLFANLDFVSIKSATCWSNEMRFIEFVLSKARLLGEFY 199
Query: 215 VFRDDSNSLSKPSEEAVIEIAKYRRASPKSRVFFRSMEDYYI 256
++ DD+ S SKP EEA+IE+AKY+RASPK++VFFR MED ++
Sbjct: 200 IYHDDTGSYSKPREEAIIELAKYKRASPKAKVFFRDMEDTWL 241
>Os08g0461400 Conserved hypothetical protein
Length = 207
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 119/198 (60%), Gaps = 3/198 (1%)
Query: 39 EWVIRAPNLKHLTIESDYDYLWRVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSMLE 98
+WVI+APNL++ I YD W++ +L L+ ATV S DRDFV+L+T +Q L+
Sbjct: 13 QWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVKLITGLSQARELD 72
Query: 99 LHLLATEDNALDGLSCSLEKLKSLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSE 158
+ + N L+GLSCS + LK L+L + +S++L F ++ + L I++
Sbjct: 73 FAMPVRDVNVLEGLSCSFKNLKCLSLCTSLHLLSNVLSFFCIIRNASKLETLRIKLFDDS 132
Query: 159 FPQNDEIDAEFFNTLETNDLFTNLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWVFRD 218
Q+DE+D +F N T+DLF+NL + +RN C ++MHFIEF+LS+ R L K V
Sbjct: 133 -TQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKARNLEKNDVCL- 190
Query: 219 DSNSLSKPSEEAVIEIAK 236
+ SK +EEAVIE+AK
Sbjct: 191 -AEDCSKSNEEAVIELAK 207
>Os08g0461300 Cyclin-like F-box domain containing protein
Length = 432
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 133/256 (51%), Gaps = 13/256 (5%)
Query: 1 MVNLPEHGESTLEAMIXXXXXXXXXXXXXVCTDGNQMDE-WVIRAPNLKHLTIESDYDYL 59
+V + HG L +I V G+ DE WVIRA NL+ LTI +Y
Sbjct: 180 VVKVQRHGGRGLATLIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYG 239
Query: 60 WRVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSMLELH---LLATEDNALDGLSCSL 116
R+E+LP L+ + ++ + LT A+V+ L + +L+TE + L+ L
Sbjct: 240 GRMEDLPRLEECCL------FGLNYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLF 293
Query: 117 EKLKSLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSEFPQNDEIDAEFFNTLETN 176
E L+SL L NF +S IL IF LL P + LD+ SE Q E + F N N
Sbjct: 294 ENLRSLILGVNFCMMSHILAIFCLLRSAPVLEELDV-WNWSEGAQEMEANDVFLNAQWIN 352
Query: 177 DLFTNLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWVFRDDSNSLSKPSEEAVIEIAK 236
+F L + ++ CL+N+MHFIEF+LS+ R+L + S+SLS EEA+I+I +
Sbjct: 353 HMFAKLHVVRMKKVYCLNNEMHFIEFILSKARVL-RVLSLTLASDSLSS-IEEAIIDITE 410
Query: 237 YRRASPKSRVFFRSME 252
Y RASP ++V F +E
Sbjct: 411 YPRASPDAQVIFMGVE 426
>Os08g0461100 Leucine-rich repeat 2 containing protein
Length = 671
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 140/271 (51%), Gaps = 30/271 (11%)
Query: 2 VNLPEHGESTLEAMIXXXXXXXXXXXXXVCTDGNQMDE-WVIRAPNLKHLTIESDYDYLW 60
V LPEH + L A+I V G+ DE WVIRAPNL+ L + + + Y
Sbjct: 248 VTLPEHMGNMLAALISASPLLEEVELVSVFLVGDYPDEEWVIRAPNLRKLIMVAAFPYGG 307
Query: 61 RVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSMLEL---HLLATEDNALDGLSCSLE 117
RVEELP L+ + ++ + LT A V+ LE ++L+TE + L+ L E
Sbjct: 308 RVEELPRLEQGIL------CGPNYAKFLTGMAHVTKLEFMCHYMLSTEVDVLEQLPFLFE 361
Query: 118 KLKSLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSEFPQ------------ND-- 163
L+SL + NF +S IL +F LL P + LD+ +M ++ Q ND
Sbjct: 362 NLRSLVISVNFCKMSHILFMFCLLRSAPVLEELDVVVMLNDHLQIHYAITCFKGQSNDAQ 421
Query: 164 EIDA--EFFNTLETNDLFTNLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWVFRDDSN 221
+IDA EF N T D+F L + ++ CL N+MHF+EFVL++ R+L V+ S+
Sbjct: 422 DIDANDEFLNAQPTYDMFAKLRVVRMKKVACLCNEMHFMEFVLNKARVLRVLSVY--PSS 479
Query: 222 SLSKPSEEAVIEIAKYRRASPKSRVFFRSME 252
++ +E+A I ++ R SP ++V F + E
Sbjct: 480 GVTCSNEQAF--ITEHPRVSPDAQVIFMNRE 508
>Os08g0461000 Cyclin-like F-box domain containing protein
Length = 279
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 68/95 (71%)
Query: 1 MVNLPEHGESTLEAMIXXXXXXXXXXXXXVCTDGNQMDEWVIRAPNLKHLTIESDYDYLW 60
MV P HGE TLEAMI V +G + DEWVIRAPNLK L I+ ++D+LW
Sbjct: 178 MVAFPPHGERTLEAMISSAPLLQSLELKNVSMEGGEWDEWVIRAPNLKDLIIQLEFDFLW 237
Query: 61 RVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVS 95
+E+LPS+QTAT+ VD++STDRDFVQLLTCFA+ S
Sbjct: 238 EIEQLPSIQTATISVDNESTDRDFVQLLTCFARPS 272
>Os09g0443000 Cyclin-like F-box domain containing protein
Length = 554
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 127/249 (51%), Gaps = 10/249 (4%)
Query: 8 GESTLEAMIXXXXXXXXXXXXXVCTDGNQMDEWVIRAPNLKHLTIESDYDYLWRVEELPS 67
GE LE +I + DG+ + WVIRAPNL+HLTI S DY W + +LP
Sbjct: 175 GEYQLEEIIENSPLLEMLVLSGIFIDGDDIINWVIRAPNLQHLTICSPNDYGWNLLDLPR 234
Query: 68 LQTATVKVDDDSTDRDFVQLLTCFAQVSMLELHLLATEDNA---LDGLSCSLE---KLKS 121
L++A + + D RDF + L V L L + N L+ L C+ + LKS
Sbjct: 235 LRSAVIDLWDYLGGRDFAEFLGKLLHVRKLHLFVSYQPSNGAKILETLPCTFDSLKSLKS 294
Query: 122 LTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSEFPQNDEIDAEFFNTLETNDLFTN 181
L L+ +F + +IL IF LL PN+ L I I +E Q E + F N T + N
Sbjct: 295 LKLYMDFCELPAILTIFCLLRNAPNLEKLKIMITDNE--QKVEANGVFQNAEWTGGMCAN 352
Query: 182 LDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWVFRDDSNSLSKPSEEAVIEIAKYRRAS 241
L + + L N+M FIE +LS+ LL V D +S +E+A+ E+ KY+RAS
Sbjct: 353 LQIVQITRISWLPNEMSFIELILSKASLLRTISVTHGDKCLMS--NEDALSELLKYKRAS 410
Query: 242 PKSRVFFRS 250
P++++ F+
Sbjct: 411 PQAQILFKG 419
>Os08g0462300 Cyclin-like F-box domain containing protein
Length = 418
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 126/247 (51%), Gaps = 7/247 (2%)
Query: 2 VNLPEHGESTLEAMIXXXXXXXXXXXXXVCTDGNQMDEWVIRAPNLKHLTIESDYDYLWR 61
++LP HG LEAMI V + + W IR PNL+ + I +DYDY R
Sbjct: 172 IDLPRHGGRRLEAMIAASPLLVELSLSNV-RSLHHWERWFIRGPNLRSVWIWTDYDYGCR 230
Query: 62 VEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSMLELHLLATE--DNALDGLSCSLEKL 119
+ ELP L+ A V T+ ++L + L + + N + S + + L
Sbjct: 231 IGELPRLEHAIVFASAIKTE-VLCKILEGISHAETLGFDAITDQFNGNPPERFSFTFQNL 289
Query: 120 KSLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSEFPQNDEIDAEFFNTLETNDLF 179
+SL LHA +SS +F +L PN+ L+IE+ + + F N ++D+F
Sbjct: 290 RSLDLHACLDQISSTSWVFCILRSAPNLETLEIEVDCDDDEVDAGSVEGFANAQASDDIF 349
Query: 180 TNLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWVFRDDSNSLSKPSEEAVIEIAKYRR 239
L D+ L + C SN+M FI+FVLS+ R L F V R S+ LS +EA IE+AKY+R
Sbjct: 350 PRLRDVWLHSIDCSSNEMCFIKFVLSKARSLELFSV-RVTSSRLSY--QEACIEMAKYKR 406
Query: 240 ASPKSRV 246
ASP +++
Sbjct: 407 ASPLAKL 413
>Os08g0460900 Cyclin-like F-box domain containing protein
Length = 584
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 13/223 (5%)
Query: 34 GNQMDE-WVIRAPNLKHLTIESDYDYLWRVEELPSLQTATVKVDDDSTDRDFVQLLTCFA 92
G+ DE WVIR NL+ LTI + Y R+E++ L+ + ++ + L A
Sbjct: 187 GDGPDEDWVIRGSNLRKLTIALGHKYGGRIEDIARLEECCL------FGPNYAKYLMRMA 240
Query: 93 QVSMLELH---LLATEDNALDGLSCSLEKLKSLTLHANFRSVSSILCIFSLLMRCPNIGV 149
V+ L + +L+TE + L+ L E L+SL L NF +S IL F LL P +
Sbjct: 241 HVTKLSFYCNSILSTEVDVLERLPFLFENLRSLVLGVNFCILSHILATFCLLRSAPVLEE 300
Query: 150 LDIEIMGSEFPQNDEIDAEFFNTLETNDLFTNLDDITLRNAPCLSNDMHFIEFVLSRVRL 209
LD+ + S+ Q + D EFF+ N +F L + ++ CL N+M IEF+LS+ R
Sbjct: 301 LDVWVF-SDGTQEMKTDDEFFDAQWVNHMFAKLHVVRMKKVSCLCNEMLLIEFILSKARA 359
Query: 210 LSKFWVFRDDSNSLSKPSEEAVIEIAKYRRASPKSRVFFRSME 252
L + ++ S EEA+ +I +Y RASP ++V F E
Sbjct: 360 LRVLSLTLASNSQFSI--EEAITDITEYPRASPYAQVIFAGRE 400
>Os08g0462200
Length = 358
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 2 VNLPEHGESTLEAMIXXXXXXXXXXXXXVCTDGNQMDEWVIRAPNLKHLTIES-DYDYLW 60
V LP HGE LEAMI V + + + W +R PN++ L I + D D+
Sbjct: 171 VELPPHGERQLEAMIAASPLLLELSLDNVHS-FHHSEVWFVRGPNIRSLRIWAVDQDFGC 229
Query: 61 RVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSMLELHLLATE--DNALDGLSCSLEK 118
R+ ELP L+ A + +D + T + + L A V L+ + L + DN + S + +
Sbjct: 230 RIGELPRLEDAVIFLDSEVTTQVLCKTLEGIAHVESLDFNALMHQFSDNPPERFSFTFQN 289
Query: 119 LKSLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSEFPQNDEIDAEFFNTLETNDL 178
L+SL LHA +SS +FS+L PN+ L+IE+ + +D F N ++D+
Sbjct: 290 LRSLDLHACLDQISSTSLVFSILRCAPNLEKLEIEVGCYDDLVDDGTVEGFANAQTSDDI 349
Query: 179 FTNL 182
F L
Sbjct: 350 FPRL 353
>Os08g0267600
Length = 191
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Query: 107 NALDGLSCSLEKLKSLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSEFPQNDEID 166
N L+G++C E L+ +L+ +F +SS+L I SLL P+I L+I+ + +E + ++ID
Sbjct: 5 NMLEGITCKFENLREASLNIDFGQLSSVLSIDSLLKFAPHIEHLEIQTLDTELDK-EKID 63
Query: 167 AEFFNTLETNDLFTNLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWV-FRDDSNSLSK 225
+ N+ ++DLF +L ++L A N M F++F+LS+ L F V F D + S+
Sbjct: 64 EDSLNSEISSDLFASLKHVSLTGAKHRENQMCFMKFLLSKAGSLQTFAVTFMFDDDGKSE 123
Query: 226 PSEEAVIEIAKYRRASPK 243
E E+ + ++ASP+
Sbjct: 124 WFENKCKELIECQKASPQ 141
>Os08g0267000 Cyclin-like F-box domain containing protein
Length = 439
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 10/214 (4%)
Query: 39 EWVIRAPNLKHLTIESDYDYLWRV-EELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSML 97
+W +RAP L+ L + + D R+ EE P L+ A + + + F ++ V L
Sbjct: 208 KWAVRAPRLRVLKMATRLDIGCRIPEEPPLLEEAYIDIGNSFMS--FHEIFRGIITVRKL 265
Query: 98 ELHLLATEDNALDGLSCSLEKLKSLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGS 157
++ + L+G+SC + L+ + + NF S + +FSLL P I L IE
Sbjct: 266 WFNIHEFNEYPLEGISCKFDNLREVHVTTNFGQQPSTMSLFSLLRCAPYIEDLSIEAEDI 325
Query: 158 EFPQND---EIDAEFFNTLETND-LFTNLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKF 213
F D EI+ + F + N+ F++L ++L SN + F++F+LS+ L F
Sbjct: 326 SFSHRDDPYEIEEDDFISSGINENSFSSLKYVSLSGITYSSNQLRFMKFLLSKTESLQSF 385
Query: 214 WVFRDDSNSLSKPSEEAVIEIAKYRR--ASPKSR 245
V S S +K +A + +RR ASP++R
Sbjct: 386 AVTFLYSKS-NKEYVKACRVLRAFRRASASPQAR 418
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,893,554
Number of extensions: 294448
Number of successful extensions: 689
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 13
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)