BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0457600 Os08g0457600|AK065020
(718 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0457600 Similar to RSH2 1304 0.0
Os03g0340900 Similar to RSH1 205 1e-52
Os09g0442600 Similar to RSH2 168 1e-41
Os05g0161200 DNA polymerase III clamp loader subunit, C-ter... 131 2e-30
Os05g0161500 DNA polymerase III clamp loader subunit, C-ter... 130 5e-30
Os05g0161800 DNA polymerase III clamp loader subunit, C-ter... 126 4e-29
Os02g0699400 RelA/SpoT domain containing protein 121 2e-27
Os07g0613000 Hypothetical protein 108 2e-23
>Os08g0457600 Similar to RSH2
Length = 718
Score = 1304 bits (3375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/718 (88%), Positives = 638/718 (88%)
Query: 1 MSVPAIAVYTSPPGAVYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRHQAIAGGLSCLF 60
MSVPAIAVYTSPPGAVYT HRHQAIAGGLSCLF
Sbjct: 1 MSVPAIAVYTSPPGAVYTSSSSSELEASSRGSAPCATAAPPSPASSHRHQAIAGGLSCLF 60
Query: 61 SSPTXXXXXXXXQDELGALWHDRSGEATAVXXXXXXXXYSYPQPSSPFKWRDMLHHSPVP 120
SSPT QDELGALWHDRSGEATAV YSYPQPSSPFKWRDMLHHSPVP
Sbjct: 61 SSPTAAPRAAAAQDELGALWHDRSGEATAVGGGGGGGGYSYPQPSSPFKWRDMLHHSPVP 120
Query: 121 LFHXXXXXXXXXXXXXXWLAGRERERLFSSFVRNALGSCVDYXXXXXXXXXXXXXXXXXX 180
LFH WLAGRERERLFSSFVRNALGSCVDY
Sbjct: 121 LFHSPASSPASRSPSASWLAGRERERLFSSFVRNALGSCVDYAPVAALPLGVSAAVGVGA 180
Query: 181 XXXXFELDEHLSEAEPSCEPYARDLLAGAQARHRIFHDELVVKAFFEAERAHRGQTRASG 240
FELDEHLSEAEPSCEPYARDLLAGAQARHRIFHDELVVKAFFEAERAHRGQTRASG
Sbjct: 181 GELAFELDEHLSEAEPSCEPYARDLLAGAQARHRIFHDELVVKAFFEAERAHRGQTRASG 240
Query: 241 DPYLQHCVETAVLLAKIGANATVVSAGLLHDTIDDSFMDYDQIFRMFGAGVADLVEGVSK 300
DPYLQHCVETAVLLAKIGANATVVSAGLLHDTIDDSFMDYDQIFRMFGAGVADLVEGVSK
Sbjct: 241 DPYLQHCVETAVLLAKIGANATVVSAGLLHDTIDDSFMDYDQIFRMFGAGVADLVEGVSK 300
Query: 301 LSHLSKLARDNNTASRTVEADRLHTMFLAMADARAVLIKLADRLHNMKTIEALPLVKQQR 360
LSHLSKLARDNNTASRTVEADRLHTMFLAMADARAVLIKLADRLHNMKTIEALPLVKQQR
Sbjct: 301 LSHLSKLARDNNTASRTVEADRLHTMFLAMADARAVLIKLADRLHNMKTIEALPLVKQQR 360
Query: 361 FAKETMEIFVPLANRLGIASWKDQLENICFKHLNPEEHKELSSKLVISFDEALLTSTLDK 420
FAKETMEIFVPLANRLGIASWKDQLENICFKHLNPEEHKELSSKLVISFDEALLTSTLDK
Sbjct: 361 FAKETMEIFVPLANRLGIASWKDQLENICFKHLNPEEHKELSSKLVISFDEALLTSTLDK 420
Query: 421 LDKGLRDEGISYHSLSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVDTEQDCYQALD 480
LDKGLRDEGISYHSLSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVDTEQDCYQALD
Sbjct: 421 LDKGLRDEGISYHSLSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVDTEQDCYQALD 480
Query: 481 IVHKLWPRVAGRFKDYILHPKLNGYRSLHTVIMCEGIHPFEVQIRTKEMHLQAEYGFAAH 540
IVHKLWPRVAGRFKDYILHPKLNGYRSLHTVIMCEGIHPFEVQIRTKEMHLQAEYGFAAH
Sbjct: 481 IVHKLWPRVAGRFKDYILHPKLNGYRSLHTVIMCEGIHPFEVQIRTKEMHLQAEYGFAAH 540
Query: 541 WRYKEGGCKHSFVLQMVEWARWVLTWQCEAMSKERSSGLGRSDAIRPPCPFPSHSEDCPY 600
WRYKEGGCKHSFVLQMVEWARWVLTWQCEAMSKERSSGLGRSDAIRPPCPFPSHSEDCPY
Sbjct: 541 WRYKEGGCKHSFVLQMVEWARWVLTWQCEAMSKERSSGLGRSDAIRPPCPFPSHSEDCPY 600
Query: 601 SYTRQCNHDGPIFVIMLEHDKMSVQELPANSTVVDLMERVGANSPRCSPYSFPLKEELRP 660
SYTRQCNHDGPIFVIMLEHDKMSVQELPANSTVVDLMERVGANSPRCSPYSFPLKEELRP
Sbjct: 601 SYTRQCNHDGPIFVIMLEHDKMSVQELPANSTVVDLMERVGANSPRCSPYSFPLKEELRP 660
Query: 661 RVNHKPISDPNRKLCMGDVVELTPALPHKSLTEYREEIQRMYERGGFALATTRDGPAS 718
RVNHKPISDPNRKLCMGDVVELTPALPHKSLTEYREEIQRMYERGGFALATTRDGPAS
Sbjct: 661 RVNHKPISDPNRKLCMGDVVELTPALPHKSLTEYREEIQRMYERGGFALATTRDGPAS 718
>Os03g0340900 Similar to RSH1
Length = 892
Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 195/339 (57%), Gaps = 25/339 (7%)
Query: 228 AERAHRGQTRASGDPYLQHCVETAVLLAKIGANATVVSAGLLHDTIDDSFM-DYDQIFRM 286
A AH GQ R SG+P++ H VE A +L + + ++AGLLHDT++D+ M +++I
Sbjct: 169 AYEAHNGQKRRSGEPFIIHPVEVARILGEHELDWESIAAGLLHDTVEDTDMVTFERIENE 228
Query: 287 FGAGVADLVEGVSKLSHLSKL-ARDNNTASRTVEADRLHTMFLAMAD-ARAVLIKLADRL 344
FG V +VEG +K+S L KL ++ + + V+A+ L MFLAM + R +++KLADRL
Sbjct: 229 FGVTVRRIVEGETKVSKLGKLQCKNEGNSKQDVKAEDLRQMFLAMTEEVRVIIVKLADRL 288
Query: 345 HNMKTIEALPLVKQQRFAKETMEIFVPLANRLGIASWKDQLENICFKHLNPEEHKELSSK 404
HNM+T+ +P KQ A ET+++F PLA LG+ K +LE + F ++NP + EL +
Sbjct: 289 HNMRTLTHMPQHKQYAIAMETLQVFAPLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKR 348
Query: 405 ---LVISFDEALLTSTLDKLDKGLRDEGISYHSLSGRHKS----LYSIYSKMIKKNLTMD 457
L + ++ L + +K D+ + S+ + +S LYSIY +K +++
Sbjct: 349 VEDLYKAHEQELEEANQILGEKIAEDQFLDLVSVETQVRSVCKELYSIYKTALKSKSSIN 408
Query: 458 DVHDIHGLRLVVD------------TEQDCYQALDIVHKLWPRVAGRFKDYILHPKLNGY 505
+++ + LR+++ +Q CY L +VH +W + KDYI PK NGY
Sbjct: 409 EINQVAQLRIIIKPKSCNGVGPLCTAQQICYHVLGLVHGIWTPIPQAVKDYIATPKPNGY 468
Query: 506 RSLHTVI---MCEGIHPFEVQIRTKEMHLQAEYGFAAHW 541
+SLHT + + E + EVQIRT++M L AE G AAH+
Sbjct: 469 QSLHTTVIPFLNESMFHLEVQIRTEDMDLIAERGIAAHY 507
>Os09g0442600 Similar to RSH2
Length = 229
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 132/244 (54%), Gaps = 28/244 (11%)
Query: 1 MSVPAIAVYTSPP-GAVYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRHQAIAGGLSCL 59
MS+PAI++YTSPP GAVY+ HR A AGGLSCL
Sbjct: 1 MSLPAISLYTSPPPGAVYSSEFDPSSRGSSPPCSTAPPSTS------HRPPAAAGGLSCL 54
Query: 60 FSSPTXXXXXXXX--QDELGALWHDRSGEATAVXXXXXXXXYSYPQPSSPFKWRDMLHH- 116
FSSP DELGALW DRS E YS SSP KWRD+ HH
Sbjct: 55 FSSPAAAASPPRAPPHDELGALWQDRSDEPA---FAGGGGGYS----SSPLKWRDLHHHH 107
Query: 117 --SPVPLFH-XXXXXXXXXXXXXXWLAGRER--ERLFSSFVRNALGSCVDYXXXXXXXXX 171
SPV +F WLAGR+R ERLF+ FVRNALGSCVDY
Sbjct: 108 HHSPVSVFQGPSSSPAASRSPPASWLAGRDRDRERLFAGFVRNALGSCVDYAPALSPRSE 167
Query: 172 XXXXXXXXXXXXXFELDEHLSEAEPSCEPYARDLLAGAQARHRIFHDELVVKAFFEAERA 231
FELDE+L+EA P+CEP AR+LLAGAQARHRIFH+ELVVK FFEAE+A
Sbjct: 168 VGGGELA------FELDENLAEASPACEPCARELLAGAQARHRIFHEELVVKTFFEAEKA 221
Query: 232 HRGQ 235
HRGQ
Sbjct: 222 HRGQ 225
>Os05g0161200 DNA polymerase III clamp loader subunit, C-terminal domain
containing protein
Length = 583
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 166/315 (52%), Gaps = 39/315 (12%)
Query: 260 NATVVSAGLLHDTIDDSFMDYDQIFRMFGAGVADLVEGVSKLSHL-SKL-ARDNNTASRT 317
+A V+SAG+L + +D + + G A L+ +L H SKL D+ +AS
Sbjct: 136 DAEVISAGILREALDAGAISMRDVKSEIGISTAHLLHESLRLKHAPSKLDVLDDESASA- 194
Query: 318 VEADRLHTMFLAMADARAVLIKLADRLHNMKTIEALPLVKQQRFAKETMEIFVPLANRLG 377
L L+ D RAV+++LA +L M+ ++ LP Q+ + E ++I+ PLA+ +G
Sbjct: 195 -----LRKFCLSYYDIRAVILELALKLDMMRHLDCLPRYLQRIKSLEVLKIYAPLAHAVG 249
Query: 378 IASWKDQLENICFKHLNPEEH---------KELSSKLVI-SFDEALLTSTL--DKLDKGL 425
+ +LE++ F++L P + +E +KL+I S+ E LL + D+L + +
Sbjct: 250 AGNLSLELEDLSFRYLFPHSYDHIDQWLRSQETENKLLIDSYKEQLLQALKDDDELSQIV 309
Query: 426 RDEGISYHSLSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVDTEQD----------C 475
+D S+ GR+KS +S K++K ++V+DI LR++++ D C
Sbjct: 310 QD-----ISIQGRYKSRFSTMKKLVKDGRKPEEVNDILALRVILEPRCDGSSLDWGPRAC 364
Query: 476 YQALDIVHKLWPRVAGRFKDYILHPKLNGYRSLHTVIMCE---GIHPF-EVQIRTKEMHL 531
++ +I+ +W V GR K+Y+ PK NGY+SLH I + P E+QIRTKEMH
Sbjct: 365 HRTHEIIQAMWKEVPGRTKNYVTRPKENGYQSLHVAIDVSEPGKMRPLMEIQIRTKEMHK 424
Query: 532 QAEYGFAAHWRYKEG 546
A G A+H YK G
Sbjct: 425 FAVGGEASHSLYKGG 439
>Os05g0161500 DNA polymerase III clamp loader subunit, C-terminal domain
containing protein
Length = 559
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 163/337 (48%), Gaps = 40/337 (11%)
Query: 238 ASGDPYLQHCVETAVLLAKIGANATVVSAGLLHDTIDDSFMDYDQIFRMFGAGVADLVEG 297
A+G L + A LA + +A V+SAG++ +D + G G A L+
Sbjct: 82 AAGGRSLARALIVAASLADLQMDAEVISAGIVRQAMDAGAVAMADAEAQLGPGAAALL-- 139
Query: 298 VSKLSHLSKLARDNNTASRTVEADR-----LHTMFLAMADARAVLIKLADRLHNMKTIEA 352
L L N SR AD + L+ D RAV+++LA RL MK ++
Sbjct: 140 ---LESLDV----KNAPSRVDVADEEAASAVRNRILSGYDVRAVILELAIRLDAMKHLDG 192
Query: 353 LPLVKQQRFAKETMEIFVPLANRLGIASWKDQLENICFKHLNPEEHKELSSKLVISFDEA 412
+P +Q+ + E +++F PLA+ +G + +LE++ F L P+ + ++ L D+
Sbjct: 193 VPKHQQRTTSLEVLKVFAPLAHAVGAGALSKELEDLSFWRLYPQAYAQVDQWLSGQEDDC 252
Query: 413 --LLTSTLDKLDKGLRDEGISYHSLS-----GRHKSLYSIYSKMIKKNLTMDDVHDIHGL 465
+L + D L + L + H+++ GR+KS +S K++K +DVHDI G+
Sbjct: 253 KRVLATCKDDLLQALAADDELRHTVAGFDVKGRYKSRFSAMKKLVKDGRRPEDVHDILGM 312
Query: 466 RLVV-------DTEQDCYQALDIVHKLWPRVAGRFKDYILHPKLNGYRSLHTVIMCEGIH 518
R+++ D + C + +++ +W V R KDYI PK +GYRSLH +
Sbjct: 313 RVILDHRAGAGDGHRACIRTHEVIKGMWKDVPARTKDYIARPKGDGYRSLHIAVDMSEPG 372
Query: 519 P-------FEVQIRTKEMHLQAEYGFAAHWRYKEGGC 548
P EVQIRTKEM+ A +G H YK GC
Sbjct: 373 PEGKKRPLMEVQIRTKEMNDAAVFG---HALYK--GC 404
>Os05g0161800 DNA polymerase III clamp loader subunit, C-terminal domain
containing protein
Length = 578
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 31/324 (9%)
Query: 250 TAVLLAKIGANATVVSAGLLHDTIDDSFMDYDQIFRMFGAGVADLVEGVSKLSHLSKLAR 309
A LA + +A V+SAG++ +D + + GA A LVE K+ K A
Sbjct: 106 VAASLADLQMDAEVISAGMVRGALDTGALAMADVEAQLGASAAGLVEESLKV----KRAP 161
Query: 310 DNNTASRTVEADRLHTMFLAMADARAVLIKLADRLHNMKTIEALPLVKQQRFAKETMEIF 369
+ A L L+ D RAV+++LA +L MK ++ LP +Q+ + E +++F
Sbjct: 162 SEVDVADEEAASALRKRCLSSYDIRAVILELAVKLDAMKHLDVLPKHQQRTTSLEVLKVF 221
Query: 370 VPLANRLGIASWKDQLENICFKHLNPEEHKELSSKLVISFDEA--LLTSTLDKLDKGLR- 426
LA+ +G +LE++ F+ L P+ + + L D+ ++ ++ ++L + L
Sbjct: 222 ALLAHAVGAGELSLELEDLSFQRLYPQAYAHIDQWLSSQEDDCKRVIAASKEELLRALTA 281
Query: 427 -DE---GISYHSLSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVD------------ 470
DE ++ + GR+KS +S K++K +DV+DI G+R+++D
Sbjct: 282 DDELRCTVTGVDVMGRYKSRFSTMKKLVKDGRRPEDVNDILGMRVILDPRPGGGGGGDGD 341
Query: 471 -TEQDCYQALDIVHKLWPRVAGRFKDYILHPKLNGYRSLHTVIMCEGIHP-------FEV 522
++ C + +++ +W V R KDYI PK NGYRSLH + P E+
Sbjct: 342 GGDRACLRTHEVIKAMWKDVPARTKDYITRPKGNGYRSLHVAVDMSEPGPEGKKRPLMEI 401
Query: 523 QIRTKEMHLQAEYGFAAHWRYKEG 546
Q+RT+EM + A G A+H YK G
Sbjct: 402 QVRTREMDMAAVGGQASHALYKGG 425
>Os02g0699400 RelA/SpoT domain containing protein
Length = 868
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 79/121 (65%), Gaps = 9/121 (7%)
Query: 434 SLSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVDTE---------QDCYQALDIVHK 484
+LS R KSLYS+Y KM +K++ + ++D LR+++ + ++CY LDIV++
Sbjct: 450 TLSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNR 509
Query: 485 LWPRVAGRFKDYILHPKLNGYRSLHTVIMCEGIHPFEVQIRTKEMHLQAEYGFAAHWRYK 544
LW + G F DYI++PK +GY+SLHT + P EVQIRT+ MH AEYG AAHW YK
Sbjct: 510 LWTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYK 569
Query: 545 E 545
E
Sbjct: 570 E 570
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 107/207 (51%), Gaps = 18/207 (8%)
Query: 215 IFHDELVVKAFFEAERAHRGQTRASGDPYLQHCVETAVLLAKI----GANA-TVVSAGLL 269
IF D V KA A AH GQ R +GDPY+ HC+ T +LA + G A V AG+L
Sbjct: 134 IFEDPKVQKAIVFASTAHIGQFRKTGDPYVTHCIHTGKILAALVPSTGERAINTVVAGIL 193
Query: 270 HDTIDDSFMDYDQIFRMFGAGVADLVEGVSKLSHLSKLARDNNTASRTVEADRLHTMFLA 329
HD IDD+ + I FG VA LV GVSKLS++ N +E L + A
Sbjct: 194 HDVIDDTAENLKSIEEQFGDDVASLVSGVSKLSYI-------NQVMHMLEKTLLSADYCA 246
Query: 330 MADARA-----VLIKLADRLHNMKTIE-ALPLVKQQRFAKETMEIFVPLANRLGIASWKD 383
D + +L K + K ALP+ K + A+ET+ ++ LA+RLG+ + K
Sbjct: 247 GIDKKTPVEALLLQKKYVLFYASKYFSYALPIRKAEAVAQETLAVWCSLASRLGVWALKA 306
Query: 384 QLENICFKHLNPEEHKELSSKLVISFD 410
+LE++CF L P K++ S+L ++
Sbjct: 307 ELEDLCFAVLQPHVFKKMRSELTTMWN 333
>Os07g0613000 Hypothetical protein
Length = 138
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 12/141 (8%)
Query: 564 LTWQCEAMSKERSSGLGRSDAIRPPCPFPSHSEDCPYSYTRQCNHDGPIFVIMLEHDKMS 623
+TWQCE + + S L R C S S+DCP+SY+++C+H GPI VI+LE++KMS
Sbjct: 1 VTWQCETLHIDHPSSLTHGAPPRAICSCSSQSDDCPFSYSKRCDHSGPILVILLENEKMS 60
Query: 624 VQELPANSTVVDLMERVGANSPRCSPYSFPLKEELRPRVNHKPISDPNRKLCMGDVVELT 683
VQE P NSTV+DL++R S Y +LR R+N + + N++L MGDVVEL
Sbjct: 61 VQEFPQNSTVLDLLKRT-------SSYDM----QLRLRLNCHVVHNLNQELKMGDVVELI 109
Query: 684 P-ALPHKSLTEYREEIQRMYE 703
P A + Y E +MY+
Sbjct: 110 PLAQCNPGAGGYAREFHQMYD 130
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,625,433
Number of extensions: 886726
Number of successful extensions: 1809
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1781
Number of HSP's successfully gapped: 9
Length of query: 718
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 610
Effective length of database: 11,396,689
Effective search space: 6951980290
Effective search space used: 6951980290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)