Os05g0161200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA polymerase III clamp loader subunit, C-terminal domain containing protein.
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Os05g0161200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA polymerase III clamp loader subunit, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.86 | 0.357 | 11.8 | -0.858 | 2.57 | 0.469 | 0.876 | 0.398 | -0.509 | 6 | 20.21 | 9 | -- | -- |
| 58.6 | 0.357 | 11.8 | -0.847 | 2.57 | 0.465 | 0.893 | -- | -0.511 | 6.03 | 20.28 | 8 | -- | -- |
| 59.73 | 0.36 | 11.8 | -0.852 | 2.57 | 0.475 | -- | 0.401 | -0.514 | 5.98 | 20.18 | 8 | -- | -- |
| 60.52 | 0.362 | 11.8 | -0.841 | 2.57 | 0.487 | -- | -- | -0.515 | 5.98 | 20.28 | 8 | -- | -- |
| 387.12 | 0.921 | 11.9 | -0.728 | -- | 0.419 | -- | 0.623 | -0.458 | -- | 0.7802 | 4 | -- | -- |
| 66.73 | 0.383 | 11.8 | -0.8 | 2.55 | -- | 1.09 | -- | -0.505 | 6.56 | -- | -- | -- | -- |
| 69.7 | 0.391 | 11.8 | -0.785 | 2.56 | -- | -- | -- | -0.509 | 6.53 | -- | -- | -- | -- |
| 382.72 | 0.915 | 11.9 | -0.697 | -- | 0.489 | -- | -- | -0.467 | -- | 4.844 | 4 | -- | -- |
| 79.36 | 0.415 | 11.8 | -- | 2.54 | 0.455 | -- | -- | -0.458 | 6.05 | 21.87 | 20 | -- | -- |
| 409.89 | 0.946 | 11.9 | -0.722 | -- | -- | -- | -- | -0.456 | -- | -- | -- | -- | -- |
| 85.94 | 0.434 | 11.8 | -- | 2.55 | -- | -- | -- | -0.421 | 6.55 | -- | -- | -- | -- |
| 395.54 | 0.929 | 11.9 | -- | -- | 0.497 | -- | -- | -0.389 | -- | 4.844 | 4 | -- | -- |
| 423.64 | 0.961 | 11.9 | -- | -- | -- | -- | -- | -0.376 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.94 | temperature | 30.0 | 30 | < th | dose independent | rect. | 16 | 18 |
| 5 | 47.52 | humidity | 60.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 7 | 47.68 | radiation | 30.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 37 | 49.36 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 38 | 49.38 | radiation | 1.0 | 30 | > th | dose independent | rect. | 10 | 9 |
| 51 | 49.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 67 | 49.80 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 68 | 49.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 19 |
| 83 | 50.31 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 102 | 50.48 | radiation | 1.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 108 | 50.52 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 19 |
| 117 | 50.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 7 |
| 118 | 50.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 121 | 50.69 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 5 |
| 123 | 50.70 | radiation | 20.0 | 10 | < th | dose dependent | sin | 19 | NA |
| 127 | 50.76 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 6 |
| 134 | 50.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 135 | 50.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 136 | 50.87 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 137 | 50.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 144 | 50.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 149 | 51.02 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 6 |
| 165 | 51.06 | humidity | 60.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 170 | 51.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 171 | 51.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 5 |
| 173 | 51.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 5 |
| 174 | 51.17 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 186 | 51.31 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 190 | 51.31 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 206 | 51.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 19 |
| 207 | 51.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 5 |
| 208 | 51.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 5 |
| 209 | 51.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 5 |
| 210 | 51.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 19 |
| 215 | 51.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 5 |
| 222 | 51.49 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 225 | 51.52 | temperature | 10.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 227 | 51.52 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 228 | 51.52 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 10 | 6 |
| 229 | 51.52 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 230 | 51.52 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 10 | 6 |
| 236 | 51.56 | wind | 9.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 249 | 51.62 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 252 | 51.63 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 258 | 51.66 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 15 |
| 261 | 51.71 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 275 | 51.74 | humidity | 90.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 285 | 51.78 | radiation | 30.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 365 | 52.03 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 367 | 52.05 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 18 |
| 368 | 52.05 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 369 | 52.07 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 7 |
| 373 | 52.08 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 402 | 52.22 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 5 |
| 410 | 52.24 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 415 | 52.26 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 5 |
| 426 | 52.28 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 442 | 52.33 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 443 | 52.34 | humidity | 90.0 | 270 | < th | dose independent | rect. | 10 | 3 |
| 446 | 52.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 454 | 52.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 455 | 52.37 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 456 | 52.37 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 458 | 52.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 459 | 52.37 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 9 |
| 464 | 52.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 15 |
| 465 | 52.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 468 | 52.37 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 476 | 52.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 498 | 52.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 524 | 52.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 17 |
| 527 | 52.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 533 | 52.58 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 18 |
| 534 | 52.58 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 537 | 52.61 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 547 | 52.67 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 563 | 52.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 9 |
| 564 | 52.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 616 | 52.88 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 5 |
| 617 | 52.88 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 632 | 52.95 | wind | 1.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 634 | 52.96 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 644 | 52.99 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 10 | 9 |
| 731 | 53.16 | wind | 9.0 | 270 | < th | dose dependent | rect. | 10 | 3 |
| 765 | 53.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 19 |
| 771 | 53.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 783 | 53.22 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 10 | 6 |
| 787 | 53.23 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 813 | 53.27 | humidity | 60.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 816 | 53.27 | humidity | 70.0 | 10 | > th | dose independent | rect. | 6 | 15 |
| 817 | 53.27 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 826 | 53.28 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 834 | 53.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 853 | 53.35 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 10 | 19 |
| 863 | 53.37 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 17 |
| 867 | 53.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 874 | 53.38 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 10 | 17 |
| 875 | 53.39 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 16 |
| 914 | 53.42 | radiation | 1.0 | 30 | > th | dose dependent | sin | 18 | NA |
| 932 | 53.46 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 955 | 53.51 | radiation | 10.0 | 10 | > th | dose independent | sin | 19 | NA |
| 960 | 53.51 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 15 |
| 971 | 53.53 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 7 |
| 985 | 53.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 7 |
| 989 | 53.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 17 |
| 991 | 53.57 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 10 | 6 |
| 1000 | 53.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 17 |