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Os02g0699400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RelA/SpoT domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0213) R2 : 0.403
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.889 (0.0511) R2dC : 0.397 R2C : 0.394
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.106 (0.0448) R2dN8 : 0.00952 R2N8 : 0.006
σ : 0.401
deviance : 73.58
__
_____
C
peak time of C : 10.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.2 0.339 11.1 -0.103 0.858 -0.616 0.446 0.853 0.0158 10.5 19.11 2560 -- --
52.84 0.339 11.1 -0.164 0.862 -0.872 0.36 -- 0.0247 10.5 18.61 2729 -- --
52.85 0.339 11.1 -0.085 0.865 -0.638 -- 0.816 0.0144 10.5 19.05 2705 -- --
53.29 0.34 11.1 -0.164 0.873 -0.892 -- -- -0.00203 10.5 18.7 2749 -- --
96.88 0.458 11.1 -0.0654 -- -0.643 -- 0.965 0.0301 -- 19.7 2343 -- --
64.18 0.376 11.2 -0.596 0.887 -- 0.349 -- -0.172 10.6 -- -- -- --
64.68 0.377 11.2 -0.581 0.885 -- -- -- -0.171 10.7 -- -- -- --
96.6 0.458 11.2 -0.135 -- -0.965 -- -- 0.0228 -- 19.1 2339 -- --
53.78 0.342 11.1 -- 0.883 -0.985 -- -- 0.00902 10.5 18.7 2793 -- --
112.94 0.497 11.2 -0.598 -- -- -- -- -0.176 -- -- -- -- --
73.58 0.401 11.2 -- 0.889 -- -- -- -0.106 10.7 -- -- -- --
96.57 0.458 11.2 -- -- -1.08 -- -- 0.0383 -- 18.65 2358 -- --
122.37 0.516 11.2 -- -- -- -- -- -0.109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.92 temperature 20.0 1440 > th dose independent rect. 6 1
2 52.02 humidity 80.0 14400 > th dose dependent rect. 5 2
3 52.06 temperature 20.0 1440 < th dose independent rect. 5 2
4 52.13 temperature 20.0 1440 < th dose independent rect. 22 2
7 52.21 temperature 20.0 1440 > th dose independent rect. 21 3
8 52.23 temperature 20.0 1440 > th dose independent rect. 22 1
34 52.70 temperature 20.0 1440 < th dose independent rect. 21 11
36 52.71 temperature 20.0 1440 < th dose independent rect. 19 12
44 52.73 temperature 20.0 1440 > th dose independent rect. 20 12
63 52.82 temperature 20.0 1440 > th dose independent sin 12 NA
64 52.82 temperature 20.0 1440 < th dose independent sin 12 NA
89 52.89 radiation 10.0 4320 < th dose dependent rect. 23 6
97 52.91 atmosphere 995.0 43200 < th dose dependent rect. 13 10
103 52.92 atmosphere 995.0 43200 < th dose dependent rect. 12 12
105 52.93 humidity 80.0 14400 > th dose dependent rect. 3 5
107 52.94 wind 5.0 43200 > th dose dependent rect. 8 1
138 53.02 atmosphere 995.0 43200 < th dose independent rect. 4 11
139 53.02 atmosphere 995.0 43200 < th dose independent rect. 2 12
142 53.02 atmosphere 995.0 43200 < th dose dependent sin 19 NA
148 53.03 atmosphere 995.0 43200 > th dose independent rect. 4 11
151 53.04 wind 9.0 43200 < th dose independent rect. 22 2
168 53.06 atmosphere 995.0 43200 < th dose dependent rect. 22 17
191 53.10 atmosphere 995.0 43200 < th dose independent sin 2 NA
193 53.10 wind 7.0 43200 < th dose independent rect. 7 2
205 53.11 atmosphere 995.0 43200 < th dose dependent rect. 9 17
228 53.13 wind 7.0 43200 > th dose independent rect. 7 2
321 53.18 atmosphere 995.0 43200 < th dose dependent sin 6 NA
322 53.18 atmosphere 995.0 43200 < th dose dependent no NA NA
341 53.19 radiation 30.0 4320 < th dose independent rect. 7 1
352 53.20 humidity 50.0 14400 > th dose dependent rect. 23 1
365 53.21 humidity 70.0 14400 > th dose dependent rect. 22 10
369 53.21 atmosphere 995.0 43200 < th dose dependent rect. 12 23
371 53.22 atmosphere 995.0 43200 > th dose independent sin 2 NA
388 53.23 humidity 50.0 14400 > th dose dependent rect. 22 10
416 53.27 radiation 20.0 4320 > th dose dependent rect. 7 1
421 53.27 atmosphere 995.0 43200 < th dose dependent rect. 14 23
423 53.28 wind 9.0 43200 > th dose independent rect. 22 2
436 53.29 temperature 20.0 1440 < th dose independent rect. 1 7
457 53.30 atmosphere 995.0 43200 < th dose dependent rect. 1 10
472 53.32 wind 9.0 43200 > th dose independent rect. 22 5
474 53.32 atmosphere 995.0 43200 < th dose independent rect. 4 7
500 53.34 wind 7.0 43200 > th dose dependent rect. 21 13
521 53.36 wind 7.0 43200 > th dose dependent rect. 23 1
583 53.41 temperature 20.0 1440 > th dose independent rect. 1 7
591 53.42 atmosphere 995.0 43200 > th dose independent rect. 6 2
599 53.42 atmosphere 995.0 43200 < th dose dependent rect. 3 6
606 53.43 atmosphere 995.0 43200 < th dose independent rect. 5 4
613 53.43 wind 9.0 43200 < th dose dependent rect. 23 1
640 53.46 wind 9.0 43200 < th dose independent rect. 20 15
651 53.47 wind 7.0 43200 < th dose independent rect. 4 5
667 53.48 wind 1.0 43200 > th dose dependent rect. 23 1
678 53.49 atmosphere 995.0 43200 < th dose independent rect. 7 17
715 53.52 radiation 30.0 4320 < th dose independent rect. 2 6
717 53.52 radiation 30.0 4320 < th dose independent rect. 24 8
718 53.52 wind 9.0 43200 > th dose independent rect. 21 10
719 53.52 radiation 30.0 4320 < th dose independent rect. 17 15
723 53.52 temperature 20.0 1440 < th dose dependent rect. 3 1
727 53.52 precipitation 0.1 43200 > th dose dependent rect. 7 1
731 53.53 radiation 30.0 4320 < th dose independent rect. 4 4
732 53.53 wind 7.0 43200 > th dose independent rect. 4 5
737 53.53 radiation 30.0 4320 < th dose independent rect. 21 11
801 53.56 precipitation 0.1 43200 > th dose independent rect. 7 1
802 53.56 precipitation 0.1 43200 < th dose independent rect. 7 1
807 53.56 wind 9.0 43200 < th dose independent rect. 21 10
815 53.56 precipitation 0.1 43200 < th dose dependent rect. 7 1
835 53.57 humidity 50.0 14400 > th dose dependent rect. 22 3
848 53.58 wind 9.0 43200 > th dose independent rect. 20 15
858 53.58 atmosphere 995.0 43200 < th dose dependent rect. 5 3
864 53.59 humidity 50.0 43200 > th dose independent rect. 19 2
887 53.60 atmosphere 995.0 43200 > th dose independent rect. 3 17
916 53.61 wind 9.0 43200 < th dose dependent rect. 8 1
924 53.62 wind 7.0 43200 < th dose independent rect. 2 8
929 53.62 temperature 20.0 1440 < th dose dependent rect. 2 3
951 53.64 wind 7.0 43200 > th dose independent rect. 2 8
974 53.65 temperature 10.0 43200 < th dose dependent rect. 3 2
975 53.65 wind 9.0 43200 > th dose dependent rect. 21 6
980 53.66 humidity 50.0 43200 > th dose independent rect. 19 4
985 53.66 wind 7.0 43200 < th dose independent rect. 23 11