Os05g0161800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA polymerase III clamp loader subunit, C-terminal domain containing protein.
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Os05g0161800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA polymerase III clamp loader subunit, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.56 | 0.685 | 2.99 | -0.0328 | 0.372 | 7.86 | -0.948 | 14 | 0.399 | 15.4 | 8.492 | 227 | -- | -- |
| 226.69 | 0.701 | 3.01 | 0.00986 | 0.19 | 4.82 | -0.754 | -- | 0.412 | 15.2 | 8.7 | 172 | -- | -- |
| 215.22 | 0.683 | 2.98 | -0.0394 | 0.36 | 7.56 | -- | 12.2 | 0.407 | 15.3 | 8.357 | 227 | -- | -- |
| 220.24 | 0.691 | 2.94 | -0.141 | 0.361 | 4.57 | -- | -- | 0.411 | 15.4 | 8.489 | 227 | -- | -- |
| 222.23 | 0.694 | 2.98 | -0.0361 | -- | 7.75 | -- | 12.1 | 0.401 | -- | 8.266 | 227 | -- | -- |
| 275.78 | 0.779 | 2.96 | -0.437 | 0.54 | -- | -1.52 | -- | 0.304 | 16 | -- | -- | -- | -- |
| 282.37 | 0.787 | 2.97 | -0.455 | 0.529 | -- | -- | -- | 0.295 | 15.8 | -- | -- | -- | -- |
| 227.23 | 0.702 | 2.93 | -0.132 | -- | 4.77 | -- | -- | 0.411 | -- | 8.333 | 227 | -- | -- |
| 220.36 | 0.691 | 2.93 | -- | 0.361 | 4.53 | -- | -- | 0.429 | 15.2 | 8.406 | 258 | -- | -- |
| 297.83 | 0.806 | 2.96 | -0.477 | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
| 287.83 | 0.794 | 2.95 | -- | 0.538 | -- | -- | -- | 0.346 | 15.7 | -- | -- | -- | -- |
| 227.57 | 0.703 | 2.93 | -- | -- | 4.73 | -- | -- | 0.428 | -- | 8.3 | 258 | -- | -- |
| 303.84 | 0.814 | 2.95 | -- | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.72 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 4 | 211.30 | wind | 7 | 270 | > th | dose dependent | rect. | 22 | 20 |
| 7 | 211.79 | wind | 7 | 270 | > th | dose dependent | sin | 22 | NA |
| 10 | 211.90 | wind | 9 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 14 | 212.08 | wind | 9 | 270 | > th | dose independent | rect. | 11 | 6 |
| 24 | 212.44 | wind | 9 | 270 | > th | dose independent | rect. | 11 | 23 |
| 25 | 212.47 | wind | 7 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 26 | 212.49 | wind | 9 | 270 | > th | dose independent | rect. | 11 | 15 |
| 36 | 212.54 | wind | 9 | 270 | > th | dose independent | rect. | 11 | 12 |
| 42 | 212.64 | wind | 9 | 270 | > th | dose independent | rect. | 21 | 21 |
| 47 | 212.79 | wind | 9 | 270 | < th | dose independent | sin | 23 | NA |
| 49 | 212.81 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 12 |
| 56 | 212.98 | wind | 9 | 90 | > th | dose independent | rect. | 11 | 9 |
| 61 | 213.04 | wind | 9 | 270 | > th | dose independent | sin | 22 | NA |
| 63 | 213.06 | wind | 9 | 270 | < th | dose independent | no | NA | NA |
| 69 | 213.17 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 126 | 213.48 | wind | 9 | 270 | > th | dose independent | no | NA | NA |
| 142 | 213.48 | wind | 9 | 270 | > th | dose independent | rect. | 1 | 22 |
| 197 | 213.57 | wind | 9 | 270 | > th | dose dependent | no | NA | NA |
| 217 | 213.57 | wind | 9 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 296 | 213.76 | wind | 9 | 270 | > th | dose independent | rect. | 1 | 17 |
| 434 | 214.36 | wind | 9 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 529 | 214.96 | wind | 9 | 270 | > th | dose independent | rect. | 15 | 23 |
| 833 | 222.17 | wind | 9 | 270 | < th | dose independent | sin | 2 | NA |
| 954 | 222.68 | wind | 9 | 270 | > th | dose independent | rect. | 13 | 3 |