Os07g0613000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0613000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.52 | 0.445 | 10.3 | 1.32 | 0.976 | -0.789 | 0.0958 | -2.33 | 0.599 | 17.2 | 1004 | 4357 | -- | -- |
| 95.25 | 0.455 | 10.3 | 1.42 | 0.985 | -0.943 | 0.111 | -- | 0.589 | 17.2 | 1003 | 4343 | -- | -- |
| 89.53 | 0.441 | 10.3 | 1.32 | 0.976 | -0.802 | -- | -2.33 | 0.601 | 17.2 | 1004 | 4395 | -- | -- |
| 93.47 | 0.45 | 10.3 | 1.49 | 1.03 | -0.98 | -- | -- | 0.589 | 17.2 | 1002 | 10566 | -- | -- |
| 139.41 | 0.55 | 10.3 | 1.28 | -- | -0.797 | -- | -2.35 | 0.581 | -- | 1004 | 4408 | -- | -- |
| 116.81 | 0.507 | 10.3 | 1.3 | 0.98 | -- | 0.123 | -- | 0.715 | 17.2 | -- | -- | -- | -- |
| 116.85 | 0.506 | 10.3 | 1.3 | 0.981 | -- | -- | -- | 0.716 | 17.2 | -- | -- | -- | -- |
| 144.77 | 0.56 | 10.3 | 1.45 | -- | -1.06 | -- | -- | 0.587 | -- | 1001 | 9941 | -- | -- |
| 146.57 | 0.564 | 10.3 | -- | 0.939 | -0.822 | -- | -- | 0.465 | 17.2 | 1002 | 9949 | -- | -- |
| 167.17 | 0.604 | 10.3 | 1.26 | -- | -- | -- | -- | 0.691 | -- | -- | -- | -- | -- |
| 161.35 | 0.594 | 10.3 | -- | 0.958 | -- | -- | -- | 0.571 | 17.2 | -- | -- | -- | -- |
| 195.34 | 0.651 | 10.3 | -- | -- | -0.768 | -- | -- | 0.457 | -- | 1001 | 7991 | -- | -- |
| 209.36 | 0.675 | 10.3 | -- | -- | -- | -- | -- | 0.551 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.21 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 2 | 86.22 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 4 | 86.30 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 94 | 89.23 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 14 |
| 109 | 89.56 | humidity | 90 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 132 | 89.80 | atmosphere | 1005 | 4320 | < th | dose independent | sin | 6 | NA |
| 136 | 89.85 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 17 |
| 154 | 90.08 | atmosphere | 1005 | 4320 | > th | dose independent | sin | 6 | NA |
| 175 | 90.21 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 11 |
| 184 | 90.28 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 13 |
| 196 | 90.43 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 198 | 90.43 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 8 |
| 220 | 90.56 | humidity | 90 | 4320 | > th | dose dependent | rect. | 2 | 7 |
| 223 | 90.57 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 11 |
| 237 | 90.65 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 13 |
| 249 | 90.70 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 251 | 90.71 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 8 |
| 282 | 90.98 | wind | 5 | 4320 | > th | dose dependent | sin | 14 | NA |
| 295 | 91.07 | humidity | 90 | 4320 | > th | dose independent | rect. | 2 | 2 |
| 310 | 91.16 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 318 | 91.21 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 2 | 8 |
| 326 | 91.27 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 329 | 91.29 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 340 | 91.31 | humidity | 90 | 4320 | > th | dose dependent | rect. | 2 | 12 |
| 376 | 91.43 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 389 | 91.47 | atmosphere | 1005 | 4320 | < th | dose dependent | sin | 5 | NA |
| 400 | 91.50 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 498 | 91.75 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 615 | 92.00 | humidity | 90 | 4320 | > th | dose independent | rect. | 24 | 9 |
| 673 | 92.10 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 681 | 92.11 | wind | 5 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 689 | 92.12 | atmosphere | 1005 | 4320 | < th | dose dependent | no | NA | NA |
| 703 | 92.13 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 13 | 23 |
| 705 | 92.14 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 709 | 92.14 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 11 | 23 |
| 720 | 92.16 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 7 | 23 |
| 748 | 92.20 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 16 |
| 845 | 92.39 | wind | 5 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 851 | 92.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 876 | 92.45 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 990 | 92.65 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 24 | 23 |