Os05g0161500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA polymerase III clamp loader subunit, C-terminal domain containing protein.
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Os05g0161500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA polymerase III clamp loader subunit, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 416.88 | 0.959 | 13.4 | -1.18 | 3.79 | 2.57 | 6.02 | 1.4 | -0.353 | 8.75 | 90 | 624 | 17.8 | 6.24 |
| 418.23 | 0.952 | 13.3 | -1.26 | 3.85 | 2.57 | 5.67 | -- | -0.307 | 8.73 | 90.83 | 615 | 17.4 | 6.62 |
| 497.47 | 1.04 | 13.4 | -1.57 | 4.62 | 2.83 | -- | -2.38 | -0.382 | 8.9 | 90.81 | 613 | 17.2 | 5.41 |
| 519.36 | 1.06 | 13.4 | -1.53 | 4.58 | 2.82 | -- | -- | -0.364 | 8.9 | 90.97 | 609 | 17.2 | 5.58 |
| 924.41 | 1.42 | 13.4 | -1.42 | -- | 3.01 | -- | -3.32 | -0.295 | -- | 115.1 | 11147 | 17.6 | 5.57 |
| 590.48 | 1.14 | 13.3 | -1.44 | 4.06 | -- | 5.79 | -- | -0.067 | 6.84 | -- | -- | -- | -- |
| 670.38 | 1.21 | 13.3 | -1.35 | 4.1 | -- | -- | -- | -0.0883 | 6.55 | -- | -- | -- | -- |
| 680.4 | 1.21 | 13.2 | -1.22 | -- | 4.08 | -- | -- | 0.252 | -- | 107 | 11092 | 17.9 | 7.85 |
| 549.33 | 1.09 | 13.4 | -- | 4.41 | 3.02 | -- | -- | -0.307 | 9.01 | 90.81 | 598 | 17.1 | 6.14 |
| 1547.17 | 1.84 | 13.4 | -1.25 | -- | -- | -- | -- | -0.004 | -- | -- | -- | -- | -- |
| 718.26 | 1.25 | 13.3 | -- | 4.09 | -- | -- | -- | 0.0618 | 6.57 | -- | -- | -- | -- |
| 694.88 | 1.23 | 13.3 | -- | -- | 4.14 | -- | -- | 0.149 | -- | 97 | 11044 | 17.6 | 9.72 |
| 1588.21 | 1.86 | 13.3 | -- | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 434.66 | humidity | 90.0 | 720 | < th | dose independent | rect. | 17 | 7 |
| 2 | 438.06 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 14 | 443.26 | humidity | 90.0 | 720 | < th | dose independent | rect. | 9 | 15 |
| 31 | 445.46 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 46 | 447.56 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 53 | 448.09 | humidity | 80.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 96 | 451.06 | humidity | 80.0 | 720 | < th | dose independent | rect. | 10 | 10 |
| 101 | 451.31 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 147 | 453.29 | humidity | 90.0 | 720 | > th | dose independent | rect. | 9 | 16 |
| 158 | 453.67 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 159 | 453.67 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 11 | 4 |
| 180 | 454.26 | humidity | 90.0 | 720 | < th | dose independent | sin | 18 | NA |
| 239 | 455.95 | humidity | 90.0 | 270 | < th | dose independent | rect. | 16 | 22 |
| 269 | 456.76 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 306 | 457.55 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 315 | 457.72 | humidity | 90.0 | 720 | > th | dose independent | rect. | 16 | 9 |
| 317 | 457.72 | humidity | 70.0 | 720 | > th | dose dependent | no | NA | NA |
| 369 | 458.72 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 413 | 459.26 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 468 | 460.22 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 476 | 460.35 | humidity | 90.0 | 720 | > th | dose independent | rect. | 19 | 6 |
| 585 | 462.30 | humidity | 90.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 590 | 462.33 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 10 | 5 |
| 652 | 463.44 | humidity | 80.0 | 720 | > th | dose independent | rect. | 5 | 14 |
| 653 | 463.44 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 667 | 463.67 | humidity | 80.0 | 720 | > th | dose independent | sin | 19 | NA |
| 732 | 464.75 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 746 | 464.94 | humidity | 90.0 | 90 | < th | dose independent | rect. | 9 | 22 |
| 753 | 465.00 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 759 | 465.11 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 772 | 465.24 | humidity | 50.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 791 | 465.46 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 826 | 465.83 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 848 | 466.12 | humidity | 90.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 906 | 467.01 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 991 | 468.13 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |