BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0161500 Os05g0161500|AK058438
(559 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G17470.1 | chr3:5979868-5981968 FORWARD LENGTH=584 421 e-118
AT3G14050.1 | chr3:4650902-4653514 REVERSE LENGTH=710 120 1e-27
AT1G54130.1 | chr1:20211177-20213761 FORWARD LENGTH=716 117 1e-26
AT4G02260.1 | chr4:985451-991178 FORWARD LENGTH=885 100 4e-21
>AT3G17470.1 | chr3:5979868-5981968 FORWARD LENGTH=584
Length = 583
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 245/538 (45%), Positives = 334/538 (62%), Gaps = 23/538 (4%)
Query: 32 TPAGSGGRLMAELLGVFNGLTERMGDDVATSSSWTLLFRALKLALPALRD---AAGGRS- 87
+P +GG+++ EL+G FN +TERM ++SS LLF+ALKL++P L+ A+ GRS
Sbjct: 53 SPEAAGGKMVVELVGAFNEVTERMNSVWLSTSSSRLLFKALKLSIPILQSLPLASDGRSP 112
Query: 88 LARALIVAASLADLQMDAEVISAGIVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKN 147
L++AL ++ LADLQMDAEVISA I+ + VKN
Sbjct: 113 LSKALSLSIILADLQMDAEVISASILSEVVDANAISIYEVRDHIGTGTAHLLHEIFRVKN 172
Query: 148 APSRXXXXXXXXXXXXRNRILSGYDVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVLK 207
P + R L+ YD+RAVI++L +LD M+HLD +P+++Q+ SLEVLK
Sbjct: 173 IPFKVDVLDDETAASLRKFYLTYYDIRAVIMDLVSKLDEMRHLDHLPRYRQQILSLEVLK 232
Query: 208 VFAPLAHAVGAGALSKELEDLSFWRLYPQAYAQVDQWLSGQEDDCKRVLATCKXXXXXXX 267
+++PLAHAVGA LS ELED+SF L+P +Y +D WL G E+ K ++ K
Sbjct: 233 IYSPLAHAVGANHLSLELEDISFRYLFPCSYIYLDSWLRGHENGSKPLIDVYKEQLHRSL 292
Query: 268 XXXXXXRHTVAGFDVKGRYKSRFSAMKKLVKDGRRPEDVHDILGMRVILDHRAGAGD--- 324
V +KGRYKSR+S MKKL++DGR+PE+V+D+LG+RVIL + D
Sbjct: 293 KDDLVLAEMVNDVYIKGRYKSRYSMMKKLLRDGRKPEEVNDVLGLRVILMPNSVVNDVEV 352
Query: 325 GHRACIRTHEVIKGMWKDVPARTKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPLMEVQ 384
G +AC RT E+I+ +WK++P RTKDYIARPK +GYRSLH+AVD+S+ + RPLME+Q
Sbjct: 353 GEKACYRTSEIIRSLWKEIPHRTKDYIARPKENGYRSLHMAVDVSD---SDQIRPLMEIQ 409
Query: 385 IRTKEMNDAAVFG---HALYKGCLADPEEAKRLKDIMLAAAEVAAQHLRDEPATGDQTGV 441
IRT +M+ +A G H+LYKG L DP+EAKRLK IMLAAA++AA L+D + Q+
Sbjct: 410 IRTMDMDGSANAGTASHSLYKGGLTDPKEAKRLKAIMLAAADLAAIRLKDISSNKHQS-- 467
Query: 442 PXXXXXXXXXGNIERAFRLLDKNGDGRISMEELTELMEDLGAGGKDAEELMRXXXXXXXX 501
+R F LLDKNGDG IS+EEL E+ME+LGA G+DAEE+M+
Sbjct: 468 -----FKTTTNQRDRVFCLLDKNGDGMISIEELMEVMEELGAPGEDAEEMMQLLDSNSDG 522
Query: 502 XXXXXEFALFQKRVELKAKLEDKDDEYKEILRQKLQKV---DDTGLIHVYRKNLSDKL 556
EF FQK+VE K ED+D+EYK +L +KL + D TGLI +Y K L D+L
Sbjct: 523 SLSSDEFDTFQKQVEFMRKWEDRDNEYKSLLDEKLHDLPHQDTTGLIQLYNKELEDRL 580
>AT3G14050.1 | chr3:4650902-4653514 REVERSE LENGTH=710
Length = 709
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 125/243 (51%), Gaps = 26/243 (10%)
Query: 167 ILSGYDVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVLKVFAPLAHAVGAGALSKELE 226
L+ D RAV+++LA RL MK L + +Q+ + E L++FAPLA+ +G +LE
Sbjct: 317 FLAMADARAVLIKLADRLHNMKTLYALSPVKQQRFAKETLEIFAPLANRLGISTWKVQLE 376
Query: 227 DLSFWRLYPQAYAQVDQWLSGQEDDCKRVLATCKXXXXXXXXXXXXXRHTVAGFDVKGRY 286
+L F LYP + ++ L ED + T + V + GR+
Sbjct: 377 NLCFKHLYPNQHNEMSTML---EDSFDEAMITSAIEKLEQALKKAGISYHV----LCGRH 429
Query: 287 KSRFSAMKKLVKDGRRPEDVHDILGMRVILDHRAGAGDGHRACIRTHEVIKGMWKDVPAR 346
KS +S K++K +++HDI G+R+I+D+ GD C + V+ +W +VP +
Sbjct: 430 KSLYSIYSKMLKKKLTVDEIHDIHGLRLIVDNE---GD----CYKALGVVHSLWSEVPGK 482
Query: 347 TKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPLMEVQIRTKEMNDAAVFG---HALYK- 402
KDYI PK +GY+SLH V + P +EVQIRT+EM+ A FG H YK
Sbjct: 483 LKDYITHPKFNGYQSLHTVVMDNGTVP-------LEVQIRTQEMHLQAEFGFAAHWRYKE 535
Query: 403 -GC 404
GC
Sbjct: 536 GGC 538
>AT1G54130.1 | chr1:20211177-20213761 FORWARD LENGTH=716
Length = 715
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 21/233 (9%)
Query: 167 ILSGYDVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVLKVFAPLAHAVGAGALSKELE 226
L+ D RAV+++LA RL M L +P +++ + E L++FAPLA+ +G + +LE
Sbjct: 321 FLAMADARAVLIKLADRLHNMMTLYALPPVKRQRFAKETLEIFAPLANRLGISSWKVKLE 380
Query: 227 DLSFWRLYPQAYAQVDQWLSGQEDDCKRVLATCKXXXXXXXXXXXXXRHTVAGFDVKGRY 286
+L F L+P + ++ L ED + T + V V GR+
Sbjct: 381 NLCFKHLHPDQHHEMSDML---EDSFDEAMITSAIEKLEQALKKEGISYHV----VSGRH 433
Query: 287 KSRFSAMKKLVKDGRRPEDVHDILGMRVILDHRAGAGDGHRACIRTHEVIKGMWKDVPAR 346
KS +S K++K +++HDI G+R+I+D+ + C + V+ +W +VP +
Sbjct: 434 KSLYSIYCKMLKKKLTMDEIHDIHGLRLIVDNE-------KDCYKALGVVHKLWSEVPGK 486
Query: 347 TKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPLMEVQIRTKEMNDAAVFGHA 399
KDYI+ PK +GY+SLH V G +EVQIRTKEM+ A FG A
Sbjct: 487 LKDYISHPKFNGYQSLHTVV-------MGDGTIPLEVQIRTKEMHLQAEFGFA 532
>AT4G02260.1 | chr4:985451-991178 FORWARD LENGTH=885
Length = 884
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 16/239 (6%)
Query: 172 DVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVLKVFAPLAHAVGAGALSKELEDLSFW 231
+VR +I++LA RL M+ L +P H+Q + + E L+VFAPLA +G ++ ELE+LSF
Sbjct: 264 EVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVFAPLAKLLGMYSIKSELENLSFM 323
Query: 232 RLYPQAYAQVDQWLSGQEDDCKRVLATCKXXXXXXXXXXXXXRHTVAGFDVKGRYKSRFS 291
+ + Y +V ++ + ++ L DV+ K +S
Sbjct: 324 YVSAEDYDRVTSRIANLYKEHEKELTEANRILVKKIEDDQFLDLVTVNTDVRSVCKETYS 383
Query: 292 AMKKLVKDGRRPEDVHDIL-GMRVILDHRAGAGDG-----HRACIRTHEVIKGMWKDVPA 345
K +K D + I +R+++ + G G + C ++ +WK +P
Sbjct: 384 IYKAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQICYHVLGLVHEIWKPIPR 443
Query: 346 RTKDYIARPKGDGYRSLHIAVDMSEPGP---EGKKRPLMEVQIRTKEMNDAAVFGHALY 401
KDYIA PK +GY+SLH V P E R +EVQIRT+EM+ A G A+Y
Sbjct: 444 TVKDYIATPKPNGYQSLHTTVI-----PFLYESMFR--LEVQIRTEEMDLIAERGIAVY 495
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,641,711
Number of extensions: 368113
Number of successful extensions: 1107
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 4
Length of query: 559
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 455
Effective length of database: 8,255,305
Effective search space: 3756163775
Effective search space used: 3756163775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)