BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0161500 Os05g0161500|AK058438
(559 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0161500 DNA polymerase III clamp loader subunit, C-ter... 896 0.0
Os05g0161800 DNA polymerase III clamp loader subunit, C-ter... 702 0.0
Os05g0161200 DNA polymerase III clamp loader subunit, C-ter... 490 e-138
Os08g0457600 Similar to RSH2 112 9e-25
Os03g0340900 Similar to RSH1 97 4e-20
Os02g0699400 RelA/SpoT domain containing protein 73 5e-13
>Os05g0161500 DNA polymerase III clamp loader subunit, C-terminal domain
containing protein
Length = 559
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/530 (85%), Positives = 455/530 (85%)
Query: 30 RLTPAGSGGRLMAELLGVFNGLTERMGDDVATSSSWTLLFRALKLALPALRDAAGGRSLA 89
RLTPAGSGGRLMAELLGVFNGLTERMGDDVATSSSWTLLFRALKLALPALRDAAGGRSLA
Sbjct: 30 RLTPAGSGGRLMAELLGVFNGLTERMGDDVATSSSWTLLFRALKLALPALRDAAGGRSLA 89
Query: 90 RALIVAASLADLQMDAEVISAGIVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKNAP 149
RALIVAASLADLQMDAEVISAGIVRQ DVKNAP
Sbjct: 90 RALIVAASLADLQMDAEVISAGIVRQAMDAGAVAMADAEAQLGPGAAALLLESLDVKNAP 149
Query: 150 SRXXXXXXXXXXXXRNRILSGYDVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVLKVF 209
SR RNRILSGYDVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVLKVF
Sbjct: 150 SRVDVADEEAASAVRNRILSGYDVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVLKVF 209
Query: 210 APLAHAVGAGALSKELEDLSFWRLYPQAYAQVDQWLSGQEDDCKRVLATCKXXXXXXXXX 269
APLAHAVGAGALSKELEDLSFWRLYPQAYAQVDQWLSGQEDDCKRVLATCK
Sbjct: 210 APLAHAVGAGALSKELEDLSFWRLYPQAYAQVDQWLSGQEDDCKRVLATCKDDLLQALAA 269
Query: 270 XXXXRHTVAGFDVKGRYKSRFSAMKKLVKDGRRPEDVHDILGMRVILDHRAGAGDGHRAC 329
RHTVAGFDVKGRYKSRFSAMKKLVKDGRRPEDVHDILGMRVILDHRAGAGDGHRAC
Sbjct: 270 DDELRHTVAGFDVKGRYKSRFSAMKKLVKDGRRPEDVHDILGMRVILDHRAGAGDGHRAC 329
Query: 330 IRTHEVIKGMWKDVPARTKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPLMEVQIRTKE 389
IRTHEVIKGMWKDVPARTKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPLMEVQIRTKE
Sbjct: 330 IRTHEVIKGMWKDVPARTKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPLMEVQIRTKE 389
Query: 390 MNDAAVFGHALYKGCLADPEEAKRLKDIMLAAAEVAAQHLRDEPATGDQTGVPXXXXXXX 449
MNDAAVFGHALYKGCLADPEEAKRLKDIMLAAAEVAAQHLRDEPATGDQTGVP
Sbjct: 390 MNDAAVFGHALYKGCLADPEEAKRLKDIMLAAAEVAAQHLRDEPATGDQTGVPAAAAAAA 449
Query: 450 XXGNIERAFRLLDKNGDGRISMEELTELMEDLGAGGKDAEELMRXXXXXXXXXXXXXEFA 509
GNIERAFRLLDKNGDGRISMEELTELMEDLGAGGKDAEELMR EFA
Sbjct: 450 SAGNIERAFRLLDKNGDGRISMEELTELMEDLGAGGKDAEELMRLLDDNNDGSLSSDEFA 509
Query: 510 LFQKRVELKAKLEDKDDEYKEILRQKLQKVDDTGLIHVYRKNLSDKLVSG 559
LFQKRVELKAKLEDKDDEYKEILRQKLQKVDDTGLIHVYRKNLSDKLVSG
Sbjct: 510 LFQKRVELKAKLEDKDDEYKEILRQKLQKVDDTGLIHVYRKNLSDKLVSG 559
>Os05g0161800 DNA polymerase III clamp loader subunit, C-terminal domain
containing protein
Length = 578
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/541 (70%), Positives = 405/541 (74%), Gaps = 15/541 (2%)
Query: 30 RLTPAGSGGRLMAELLGVFNGLTERMGDDVATSSSWTLLFRALKLALPALRDAAGG---- 85
RL PAGSGGRLMAELLGVFNGLTERMG+DVATSSS LLFRALKLALPALRD G
Sbjct: 38 RLAPAGSGGRLMAELLGVFNGLTERMGEDVATSSSSRLLFRALKLALPALRDGGGDGGGG 97
Query: 86 RSLARALIVAASLADLQMDAEVISAGIVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXDV 145
+S++RAL+VAASLADLQMDAEVISAG+VR V
Sbjct: 98 QSVSRALVVAASLADLQMDAEVISAGMVRGALDTGALAMADVEAQLGASAAGLVEESLKV 157
Query: 146 KNAPSRXXXXXXXXXXXXRNRILSGYDVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEV 205
K APS R R LS YD+RAVILELA++LDAMKHLD +PKHQQRTTSLEV
Sbjct: 158 KRAPSEVDVADEEAASALRKRCLSSYDIRAVILELAVKLDAMKHLDVLPKHQQRTTSLEV 217
Query: 206 LKVFAPLAHAVGAGALSKELEDLSFWRLYPQAYAQVDQWLSGQEDDCKRVLATCKXXXXX 265
LKVFA LAHAVGAG LS ELEDLSF RLYPQAYA +DQWLS QEDDCKRV+A K
Sbjct: 218 LKVFALLAHAVGAGELSLELEDLSFQRLYPQAYAHIDQWLSSQEDDCKRVIAASKEELLR 277
Query: 266 XXXXXXXXRHTVAGFDVKGRYKSRFSAMKKLVKDGRRPEDVHDILGMRVILDHR------ 319
R TV G DV GRYKSRFS MKKLVKDGRRPEDV+DILGMRVILD R
Sbjct: 278 ALTADDELRCTVTGVDVMGRYKSRFSTMKKLVKDGRRPEDVNDILGMRVILDPRPGGGGG 337
Query: 320 AGAGDGHRACIRTHEVIKGMWKDVPARTKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRP 379
G RAC+RTHEVIK MWKDVPARTKDYI RPKG+GYRSLH+AVDMSEPGPEGKKRP
Sbjct: 338 GDGDGGDRACLRTHEVIKAMWKDVPARTKDYITRPKGNGYRSLHVAVDMSEPGPEGKKRP 397
Query: 380 LMEVQIRTKEMNDAAVFG---HALYKGCLADPEEAKRLKDIMLAAAEVAAQHLRDEPATG 436
LME+Q+RT+EM+ AAV G HALYKG L DPEEAKRLK IMLAAAEVAAQHLRDEPA G
Sbjct: 398 LMEIQVRTREMDMAAVGGQASHALYKGGLTDPEEAKRLKAIMLAAAEVAAQHLRDEPA-G 456
Query: 437 DQTGVPXXXXXXXXXGNIERAFRLLDKNGDGRISMEELTELMEDLGAGGKDAEELMRXXX 496
D G GN+ERAF+LLDKNGDGRISMEELTE+MEDLGAGG DAEELMR
Sbjct: 457 D-GGQTTAAASAATAGNVERAFQLLDKNGDGRISMEELTEIMEDLGAGGHDAEELMRLLD 515
Query: 497 XXXXXXXXXXEFALFQKRVELKAKLEDKDDEYKEILRQKLQKVDDTGLIHVYRKNLSDKL 556
EFALFQKRV+LK KLE+KDDEYKEIL+QKLQKVDDTGLIHVYRKNLSDKL
Sbjct: 516 ANSDGSLSSDEFALFQKRVKLKTKLENKDDEYKEILKQKLQKVDDTGLIHVYRKNLSDKL 575
Query: 557 V 557
V
Sbjct: 576 V 576
>Os05g0161200 DNA polymerase III clamp loader subunit, C-terminal domain
containing protein
Length = 583
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 292/529 (55%), Positives = 354/529 (66%), Gaps = 24/529 (4%)
Query: 37 GGRLMAELLGVFNGLTERMGDDVATSSSWTLLFRALKLALPALRDAAGGRSLARALIVAA 96
GGRL+AEL+G FN LT RMG+ +ATSSS LLFRALKLALPALRD GGR+LARAL +AA
Sbjct: 69 GGRLVAELVGAFNELTGRMGEGLATSSSSRLLFRALKLALPALRDGDGGRALARALAIAA 128
Query: 97 SLADLQMDAEVISAGIVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKNAPSRXXXXX 156
SLADLQMDAEVISAGI+R+ +K+APS+
Sbjct: 129 SLADLQMDAEVISAGILREALDAGAISMRDVKSEIGISTAHLLHESLRLKHAPSKLDVLD 188
Query: 157 XXXXXXXRNRILSGYDVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVLKVFAPLAHAV 216
R LS YD+RAVILELA++LD M+HLD +P++ QR SLEVLK++APLAHAV
Sbjct: 189 DESASALRKFCLSYYDIRAVILELALKLDMMRHLDCLPRYLQRIKSLEVLKIYAPLAHAV 248
Query: 217 GAGALSKELEDLSFWRLYPQAYAQVDQWLSGQEDDCKRVLATCKXXXXXXXXXXXXXRHT 276
GAG LS ELEDLSF L+P +Y +DQWL QE + K ++ + K
Sbjct: 249 GAGNLSLELEDLSFRYLFPHSYDHIDQWLRSQETENKLLIDSYKEQLLQALKDDDELSQI 308
Query: 277 VAGFDVKGRYKSRFSAMKKLVKDGRRPEDVHDILGMRVILDHRAGAGD---GHRACIRTH 333
V ++GRYKSRFS MKKLVKDGR+PE+V+DIL +RVIL+ R G RAC RTH
Sbjct: 309 VQDISIQGRYKSRFSTMKKLVKDGRKPEEVNDILALRVILEPRCDGSSLDWGPRACHRTH 368
Query: 334 EVIKGMWKDVPARTKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPLMEVQIRTKEMNDA 393
E+I+ MWK+VP RTK+Y+ RPK +GY+SLH+A+D+SEP GK RPLME+QIRTKEM+
Sbjct: 369 EIIQAMWKEVPGRTKNYVTRPKENGYQSLHVAIDVSEP---GKMRPLMEIQIRTKEMHKF 425
Query: 394 AVFG---HALYKGCLADPEEAKRLKDIMLAAAEVAAQHLRDEPAT--GDQTGVPXXXXXX 448
AV G H+LYKG L DP EAKRLK IMLAAAE+AA LRD PA+ GD
Sbjct: 426 AVGGEASHSLYKGGLTDPGEAKRLKAIMLAAAELAAMRLRDLPASDQGDSNCT------- 478
Query: 449 XXXGNIERAFRLLDKNGDGRISMEELTELMEDLGAGGKDAEELMRXXXXXXXXXXXXXEF 508
RAF LDKNGDGRIS+EELTE+MEDLGAGGKDA+ELM EF
Sbjct: 479 ------NRAFCQLDKNGDGRISIEELTEVMEDLGAGGKDAKELMHLLDANSDGSLSSDEF 532
Query: 509 ALFQKRVELKAKLEDKDDEYKEILRQKLQKVDDTGLIHVYRKNLSDKLV 557
FQ+++EL L+DKDD Y++IL++KLQ +D GLI VYRK L DKL+
Sbjct: 533 EAFQRQIELMRSLDDKDDRYRKILKEKLQTIDSAGLIQVYRKQLGDKLL 581
>Os08g0457600 Similar to RSH2
Length = 718
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 26/243 (10%)
Query: 167 ILSGYDVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVLKVFAPLAHAVGAGALSKELE 226
L+ D RAV+++LA RL MK ++ +P +Q+ + E +++F PLA+ +G + +LE
Sbjct: 327 FLAMADARAVLIKLADRLHNMKTIEALPLVKQQRFAKETMEIFVPLANRLGIASWKDQLE 386
Query: 227 DLSFWRLYPQAYAQVDQWLSGQEDDCKRVLATCKXXXXXXXXXXXXXRHTVAGFDVKGRY 286
++ F L P+ + ++ L D+ +L + H+++ GR+
Sbjct: 387 NICFKHLNPEEHKELSSKLVISFDEA--LLTSTLDKLDKGLRDEGISYHSLS-----GRH 439
Query: 287 KSRFSAMKKLVKDGRRPEDVHDILGMRVILDHRAGAGDGHRACIRTHEVIKGMWKDVPAR 346
KS +S K++K +DVHDI G+R+++ D + C + +++ +W V R
Sbjct: 440 KSLYSIYSKMIKKNLTMDDVHDIHGLRLVV-------DTEQDCYQALDIVHKLWPRVAGR 492
Query: 347 TKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPLMEVQIRTKEMNDAAVFG---HALYK- 402
KDYI PK +GYRSLH + P EVQIRTKEM+ A +G H YK
Sbjct: 493 FKDYILHPKLNGYRSLHTVIMCEGIHP-------FEVQIRTKEMHLQAEYGFAAHWRYKE 545
Query: 403 -GC 404
GC
Sbjct: 546 GGC 548
>Os03g0340900 Similar to RSH1
Length = 892
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 14/246 (5%)
Query: 172 DVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVLKVFAPLAHAVGAGALSKELEDLSFW 231
+VR +I++LA RL M+ L +P+H+Q ++E L+VFAPLA +G + ELE LSF
Sbjct: 276 EVRVIIVKLADRLHNMRTLTHMPQHKQYAIAMETLQVFAPLAKLLGMYRIKSELEYLSFM 335
Query: 232 RLYPQAYAQVDQWLSGQEDDCKRVLATCKXXXXXXXXXXXXXRHTVAGFDVKGRYKSRFS 291
+ P +A++ + + ++ L V+ K +S
Sbjct: 336 YMNPGDFAELKKRVEDLYKAHEQELEEANQILGEKIAEDQFLDLVSVETQVRSVCKELYS 395
Query: 292 AMKKLVKDGRRPEDVHDILGMRVILDHRAGAGDG-----HRACIRTHEVIKGMWKDVPAR 346
K +K +++ + +R+I+ ++ G G + C ++ G+W +P
Sbjct: 396 IYKTALKSKSSINEINQVAQLRIIIKPKSCNGVGPLCTAQQICYHVLGLVHGIWTPIPQA 455
Query: 347 TKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPL-MEVQIRTKEMN---DAAVFGHALYK 402
KDYIA PK +GY+SLH V P + +EVQIRT++M+ + + H +
Sbjct: 456 VKDYIATPKPNGYQSLHTTVI-----PFLNESMFHLEVQIRTEDMDLIAERGIAAHYSGR 510
Query: 403 GCLADP 408
G ++ P
Sbjct: 511 GVVSGP 516
>Os02g0699400 RelA/SpoT domain containing protein
Length = 868
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 277 VAGFDV--KGRYKSRFSAMKKLVKDGRRPEDVHDILGMRVILDHRAGA--GDGHRACIRT 332
+ G +V R KS +S K+ + + ++D +RVI+ + GA G + C
Sbjct: 444 IPGMEVTLSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSV 503
Query: 333 HEVIKGMWKDVPARTKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPLMEVQIRTKEMND 392
+++ +W + DYI PKG GY+SLH AV S+ P +EVQIRT+ M++
Sbjct: 504 LDIVNRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSP-------LEVQIRTQRMHE 556
Query: 393 AAVFG---HALYK 402
A +G H LYK
Sbjct: 557 YAEYGLAAHWLYK 569
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,223,703
Number of extensions: 657121
Number of successful extensions: 1787
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1767
Number of HSP's successfully gapped: 6
Length of query: 559
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 453
Effective length of database: 11,501,117
Effective search space: 5210006001
Effective search space used: 5210006001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)