BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0288400 Os08g0288400|AK101928
(667 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0288400 Nonaspanin (TM9SF) family protein 740 0.0
Os02g0797700 Nonaspanin (TM9SF) family protein 326 4e-89
Os02g0722300 Nonaspanin (TM9SF) family protein 303 3e-82
Os05g0168500 Nonaspanin (TM9SF) family protein 300 3e-81
Os08g0496900 Nonaspanin (TM9SF) family protein 291 1e-78
Os06g0650600 Nonaspanin (TM9SF) family protein 175 8e-44
Os08g0554900 Nonaspanin (TM9SF) family protein 173 3e-43
Os09g0557800 Similar to PHG1A protein 172 1e-42
AK061096 103 5e-22
>Os08g0288400 Nonaspanin (TM9SF) family protein
Length = 667
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/539 (72%), Positives = 392/539 (72%)
Query: 1 MAMATPMAPRSTFAIFLILLLRSGHSPAAAFYLPGSYPHRYRPGEALAAKVNSLTSPSSK 60
MAMATPMAPRSTFAIFLILLLRSGHSPAAAFYLPGSYPHRYRPGEALAAKVNSLTSPSSK
Sbjct: 1 MAMATPMAPRSTFAIFLILLLRSGHSPAAAFYLPGSYPHRYRPGEALAAKVNSLTSPSSK 60
Query: 61 LPFPYYSLPFCAPQGGVNRAAESLGELLLGDRIETSPYRFSMLKNATAFLCRTDPLPPAT 120
LPFPYYSLPFCAPQGGVNRAAESLGELLLGDRIETSPYRFSMLKNATAFLCRTDPLPPAT
Sbjct: 61 LPFPYYSLPFCAPQGGVNRAAESLGELLLGDRIETSPYRFSMLKNATAFLCRTDPLPPAT 120
Query: 121 ADLLMFRIDDAYHVNLLLDTLPVVRYVKNLAAPGVFVRSTGFPVGVRADDGEYYVYNHLK 180
ADLLMFRIDDAYHVNLLLDTLPVVRYVKNLAAPGVFVRSTGFPVGVRADDGEYYVYNHLK
Sbjct: 121 ADLLMFRIDDAYHVNLLLDTLPVVRYVKNLAAPGVFVRSTGFPVGVRADDGEYYVYNHLK 180
Query: 181 LTVLVNKPRNGTTRAEALMATADAVELISFAGGSKDGGGYTVVGFEVVPCSVEHDAAAIK 240
LTVLVNKPRNGTTRAEALMATADAVELISFAGGSKDGGGYTVVGFEVVPCSVEHDAAAIK
Sbjct: 181 LTVLVNKPRNGTTRAEALMATADAVELISFAGGSKDGGGYTVVGFEVVPCSVEHDAAAIK 240
Query: 241 GKKMYDELPARAAAGCDPSVVGMRVRANRPLVFSYEVAFVESGVEWPSRWDAYLEMGGAK 300
GKKMYDELPARAAAGCDPSVVGMRVRANRPLVFSYEVAFVESGVEWPSRWDAYLEMGGAK
Sbjct: 241 GKKMYDELPARAAAGCDPSVVGMRVRANRPLVFSYEVAFVESGVEWPSRWDAYLEMGGAK 300
Query: 301 VHWFSILNSXXXXXXXXXXXXXXXXXXXXXDLAQYDEHGGEAGLAPQADELAGWKLVAGD 360
VHWFSILNS DLAQYDEHGGEAGLAPQADELAGWKLVAGD
Sbjct: 301 VHWFSILNSIVVVAFLAAILLVILLRTVRRDLAQYDEHGGEAGLAPQADELAGWKLVAGD 360
Query: 361 VFREPAHHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGAARGQRRVEX 420
VFREPAHHPL EDGAARGQRRVE
Sbjct: 361 VFREPAHHPLRGARVHVAGVARRARDGHARHLPPPRLRGGVRRRAALEDGAARGQRRVEA 420
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRAVPALRRDPPPLXXXXXXXXXXXXXXX 480
GRRAVPALRRDPPPL
Sbjct: 421 RGVARLLRLPRRGLRRLHRAQLRALVQRQHGRRAVPALRRDPPPLGVRLRAAHPRRRAGG 480
Query: 481 XXXXXXXXXXEDEQDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPVAGEGVL 539
EDEQDRE EPVAGEGVL
Sbjct: 481 IPRRAPRVPGEDEQDREAGAGGAVLAVGVRGGGGDAAVRDAVHRAAVHHVEPVAGEGVL 539
>Os02g0797700 Nonaspanin (TM9SF) family protein
Length = 665
Score = 326 bits (835), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 173/348 (49%), Positives = 220/348 (63%), Gaps = 19/348 (5%)
Query: 28 AAAFYLPGSYPHRYRPGEALAAKVNSLTSPSSKLPFPYYSLPFCAPQGGVNRAAESLGEL 87
A FYLPGSYPH+Y PGE L+ KVNSLTS +++P+ YYSLPFC P GV +AE+LGEL
Sbjct: 25 ADGFYLPGSYPHKYNPGEPLSVKVNSLTSIDTEIPYSYYSLPFCTPPDGVKDSAENLGEL 84
Query: 88 LLGDRIETSPYRFSMLKN-ATAFLCRTDPLPPATADLLMFRIDDAYHVNLLLDTLPVVRY 146
L+GDRIE SPYRF M N + FLCR+ PL +LL RID+ Y VNL+LD LP +RY
Sbjct: 85 LMGDRIENSPYRFRMHANDSDLFLCRSPPLAADAFNLLKKRIDEMYQVNLILDNLPAIRY 144
Query: 147 VKNLAAPGVFVRSTGFPVGVRADDGEYYVYNHLKLTVLVNKPRNGTTRAEALMATADAVE 206
K F+R TG+PVG+R +YYV+NHL+ TVLV+K +M T DA +
Sbjct: 145 TKK---DDYFLRWTGYPVGIRVGV-DYYVFNHLQFTVLVHKYEEA--NVARVMGTGDATD 198
Query: 207 LISFAGGSKD-------GGGYTVVGFEVVPCSVEHDAAAIKGKKMYDELPARAAAGCDPS 259
F KD G+ VVGFEVVPCS++H+ +K KMY + P + CDP+
Sbjct: 199 --GFPSTGKDGSGGAAGSSGWMVVGFEVVPCSIKHNPDDVKSLKMYGKYP--RSIKCDPT 254
Query: 260 VVGMRVRANRPLVFSYEVAFVESGVEWPSRWDAYLEMGGAKVHWFSILNSXXXXXXXXXX 319
V M ++ N P+V++YEV+FVES ++WPSRWDAYL+M GAKVHWFSILNS
Sbjct: 255 TVSMSIKENEPIVYTYEVSFVESDIKWPSRWDAYLKMEGAKVHWFSILNSLMVIAFLAGI 314
Query: 320 XXXXXXXXXXXDLAQYDEHGGEAGLAPQADELAGWKLVAGDVFREPAH 367
DL +Y+E EA A +EL+GWKLV DVFR P++
Sbjct: 315 VFVILLRTVRRDLTRYEELDSEAQ-AQMNEELSGWKLVVSDVFRAPSN 361
>Os02g0722300 Nonaspanin (TM9SF) family protein
Length = 653
Score = 303 bits (776), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/359 (44%), Positives = 219/359 (61%), Gaps = 15/359 (4%)
Query: 14 AIFLILLLRSGHSPAAAFYLPGSYPHRYRPGEALAAKVNSLTSPSSKLPFPYYSLPFCAP 73
A+ ++ L+ + H AFYLPGSY H YR GE + AKVNSLTS ++LPF YYSLP+C P
Sbjct: 9 ALLMVFLVLAPH--CEAFYLPGSYMHTYRQGEEIWAKVNSLTSIETELPFSYYSLPYCHP 66
Query: 74 QGGVNRAAESLGELLLGDRIETSPYRFSMLKNATAFLCRTDPLPPATADLLMFRIDDAYH 133
QGG+ ++AE+LGELL+GD+I+ SPYRF + N + +LC T+PL A LL R D Y
Sbjct: 67 QGGIKKSAENLGELLMGDQIDNSPYRFRVNVNESLYLCTTNPLDEADVKLLKQRSRDLYQ 126
Query: 134 VNLLLDTLPVVRYVKNLAAPGVFVRSTGFPVGVRAD-DGEYYVYNHLKLTVLVNKPRNGT 192
VN++LD LPV R+ + GV ++ TG+PVG + E Y+ NHLK VLV++ G
Sbjct: 127 VNMILDNLPVRRFTEQ---NGVTIQWTGYPVGYTPEGSNEVYIINHLKFKVLVHRYEGGK 183
Query: 193 TRAEALMATADAVELISFAGGSKDGGGYTVVGFEVVPCSVEHDAAAIKGKKMYDEL-PAR 251
+ ++ T + +E+IS + GY +VGFEVVPCS++ D A+ KMY+++ P
Sbjct: 184 VK---VVGTGEGMEVIS-ETETDAKSGYEIVGFEVVPCSMKRDLEAMSKLKMYEKVDPTS 239
Query: 252 AAAGCDPSVVGMRVRANRPLVFSYEVAFVESGVEWPSRWDAYLEMGGAKVHWFSILNSXX 311
+ S + +R + F+YEV FV S + WPSRWDAYL+M GAK+HWFSI+NS
Sbjct: 240 CPVEMEKSQL---IREKEQITFTYEVEFVNSDIRWPSRWDAYLKMEGAKIHWFSIMNSLM 296
Query: 312 XXXXXXXXXXXXXXXXXXXDLAQYDEHGGEAGLAPQADELAGWKLVAGDVFREPAHHPL 370
DL +Y+E EA A +EL+GWKLV GDVFREP L
Sbjct: 297 VILFLAGIVFVIFLRTVRRDLTRYEELDKEAQ-AQMNEELSGWKLVVGDVFREPTSSKL 354
>Os05g0168500 Nonaspanin (TM9SF) family protein
Length = 656
Score = 300 bits (767), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 218/357 (61%), Gaps = 16/357 (4%)
Query: 16 FLILLLRSGHSPAAAFYLPGSYPHRYRPGEALAAKVNSLTSPSSKLPFPYYSLPFCAPQG 75
+L+++L S H A FYLPG++ H Y P E ++AKVNSLTS ++LPF YYSLP+C P
Sbjct: 14 YLLVVLVSLHGGANGFYLPGTFMHTYTPNEVISAKVNSLTSIETELPFSYYSLPYCKPPE 73
Query: 76 GVNRAAESLGELLLGDRIETSPYRFSMLKNATAFLCRTDPLPPATADLLMFRIDDAYHVN 135
GV ++AE+LGE+L+GD+I+ SPYRF + N + +LC TDPL A+LL R D Y VN
Sbjct: 74 GVKKSAENLGEILMGDQIDNSPYRFRVNVNESVYLCTTDPLTKEQAELLKKRARDLYQVN 133
Query: 136 LLLDTLPVVRYVKNLAAPGVFVRSTGFPVGVR-ADDGEYYVYNHLKLTVLVNKPRNGTTR 194
++LD LPV+R+ + GV ++ TGFPVG E Y+ NHL+ VLV++ + +
Sbjct: 134 MILDNLPVMRFTEQ---NGVTIQWTGFPVGYNPMGSNEDYIINHLRFKVLVHQYQ---AQ 187
Query: 195 AEALMATADAVELISFAGGSKDGGGYTVVGFEVVPCSVEHDAAAIKGKKMYDEL-PARAA 253
+ ++ + D V ++ S G+ +VGFEVVPCSV D A+ KMYD++ +
Sbjct: 188 GDVVITSEDGVAMVE----SDRKSGFQIVGFEVVPCSVRRDPEAMSKLKMYDKVDSVKCP 243
Query: 254 AGCDPSVVGMRVRANRPLVFSYEVAFVESGVEWPSRWDAYLEMGGAKVHWFSILNSXXXX 313
+ S +R N + F+Y+V +V+S ++WPSRWDAYL+M GAKVHWFSI+NS
Sbjct: 244 LELEKS---QAIRENERITFTYDVEYVKSNIKWPSRWDAYLKMDGAKVHWFSIMNSMMVV 300
Query: 314 XXXXXXXXXXXXXXXXXDLAQYDEHGGEAGLAPQADELAGWKLVAGDVFREPAHHPL 370
DL +Y+E EA A +EL+GWKLV GDVFREP L
Sbjct: 301 FFLAGIVFVIFLRTVRRDLTRYEEMDKEAQ-AQMNEELSGWKLVVGDVFREPCCSKL 356
>Os08g0496900 Nonaspanin (TM9SF) family protein
Length = 661
Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/344 (46%), Positives = 204/344 (59%), Gaps = 13/344 (3%)
Query: 26 SPAAAFYLPGSYPHRYRPGEALAAKVNSLTSPSSKLPFPYYSLPFCAPQGGVNRAAESLG 85
SP AFYLPGSY H Y GE + AKVNSLTS +++PF YYSLP+C PQGG+ ++AE+LG
Sbjct: 24 SPGNAFYLPGSYMHTYSQGEEIWAKVNSLTSIETEMPFSYYSLPYCRPQGGIKKSAENLG 83
Query: 86 ELLLGDRIETSPYRFSMLKNATAFLCRTDPLPPATADLLMFRIDDAYHVNLLLDTLPVVR 145
ELL+GD+I+ SPYRF + N + +LC T L A LL R D Y VN++LD LPV+R
Sbjct: 84 ELLMGDQIDNSPYRFRVNVNESLYLCTTKGLNENDAKLLKQRTRDLYQVNMMLDNLPVMR 143
Query: 146 YVKNLAAPGVFVRSTGFPVGVR-ADDGEYYVYNHLKLTVLVNKPRNGTTRAEALMATADA 204
+ + G+ V+ TGFPVG A E Y+ NHLK VLV++ R ++ T +
Sbjct: 144 FTEQ---NGITVQWTGFPVGYTPAGISEDYIINHLKFKVLVHEYEG---RNVEIIGTGEE 197
Query: 205 VELISFAGGSKDGGGYTVVGFEVVPCSVEHDAAAIKGKKMYDEL-PARAAAGCDPSVVGM 263
+ K GY +VGFEVVPCSV+ DA A MYD + P S V
Sbjct: 198 GSGVISEFDKKGMSGYQIVGFEVVPCSVKRDAEAFSKSNMYDSIEPVSCPMELQKSQV-- 255
Query: 264 RVRANRPLVFSYEVAFVESGVEWPSRWDAYLEM-GGAKVHWFSILNSXXXXXXXXXXXXX 322
+R + F+Y+V FV+S ++WPSRWDAYL+M GAKVHWFSI+NS
Sbjct: 256 -IRQQERITFTYDVEFVKSDIKWPSRWDAYLKMEAGAKVHWFSIMNSLMVILFLAGIVFV 314
Query: 323 XXXXXXXXDLAQYDEHGGEAGLAPQADELAGWKLVAGDVFREPA 366
DL +Y+E EA A +EL+GWKLV GDVFREP
Sbjct: 315 IFLRTVRRDLTRYEELDKEAQ-AQMNEELSGWKLVVGDVFREPT 357
>Os06g0650600 Nonaspanin (TM9SF) family protein
Length = 645
Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 181/362 (50%), Gaps = 58/362 (16%)
Query: 23 SGHSPAAAFYLPGSYPHRYRPGEALAAKVNSLTSPSSKLPFPYYSLPFCAPQGGVNRAAE 82
+G A FYLPG P +R + LA KVN L+S ++LP+ YYSLPFC P V+ +AE
Sbjct: 19 AGAGAARGFYLPGVAPRDFRKKDQLAVKVNQLSSIKTQLPYSYYSLPFCRPATIVD-SAE 77
Query: 83 SLGELLLGDRIETSPYRFSMLK-NATAFLCRTDPLPPATADLLMFRIDDAYHVNLLLDTL 141
+LGE+L GDRIE S Y F M + +C+T L A +IDD Y +N++LD L
Sbjct: 78 NLGEVLRGDRIENSLYVFEMREPRLCQIVCKT-ALTHQEAKDFREKIDDEYRINMILDNL 136
Query: 142 PVVRYVKNLA----APGVFVRSTGFPVGVR-----ADDGEYYVYNHLKLTVLVNKPRNGT 192
P+V +++L AP + G VG++ +++ ++++YNHL V ++ N T
Sbjct: 137 PLVVPIRSLLDDHDAPTSY--QLGVHVGIKGQYAGSNEEKHFIYNHLSFLVKYHRDEN-T 193
Query: 193 TRAEALMATADAVELISFAGGSKDGGGYTVVGFEVVPCSVEHDAAAIKGKKMYDELPARA 252
A +VGFEV P S +H+ G+ +E +
Sbjct: 194 DLAR-------------------------IVGFEVKPFSTKHE---YDGEWKENETRLKT 225
Query: 253 AAGCDPS----VVG----MRVRANRPLVFSYEVAFVESGVEWPSRWDAYLEMGGAKVHWF 304
CDP VV V A + ++F+Y+V F ES ++W SRWD+YL M ++HWF
Sbjct: 226 ---CDPHSRRLVVDSDSPQEVEAGKEIIFTYDVNFEESDIKWASRWDSYLLMTDDQIHWF 282
Query: 305 SILNSXXXXXXXXXXXXXXXXXXXXXDLAQYDEHGGEAGLAPQADELAGWKLVAGDVFRE 364
SI+NS D+++Y+ + +A E GWKLV GDVFR
Sbjct: 283 SIVNSLMIVLFLSGMLAMIMLRTLYRDISKYN----QLETQEEAQEETGWKLVHGDVFRP 338
Query: 365 PA 366
PA
Sbjct: 339 PA 340
>Os08g0554900 Nonaspanin (TM9SF) family protein
Length = 646
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 173/353 (49%), Gaps = 51/353 (14%)
Query: 31 FYLPGSYPHRYRPGEALAAKVNSLTSPSSKLPFPYYSLPFCAPQGGVNRAAESLGELLLG 90
FYLPG P+ ++ + L KVN L+S ++LP+ YYSLPFC P V+ +AE+LGE+L G
Sbjct: 33 FYLPGVAPNDFQKKDPLQVKVNKLSSTKTQLPYSYYSLPFCKPDTIVD-SAENLGEVLRG 91
Query: 91 DRIETSPYRFSMLKNATAFLCRTDPLPPATADLLMFRIDDAYHVNLLLDTLPVVRYVKNL 150
DRIE SPY F M + + + A L +I+D Y VN++LD LP+V +
Sbjct: 92 DRIENSPYVFEMREPKMCQIVCKATISDKQAKELKEKIEDEYRVNMILDNLPLVVPITRP 151
Query: 151 AAPGVFVRSTGFPVGVR-----ADDGEYYVYNHLKLTVLVNKPRNGTTRAEALMATADAV 205
V V G+ VGV+ + D +Y+++NHL V +K N
Sbjct: 152 DRDDV-VFQGGYHVGVKGQYAGSKDEKYFIHNHLIFLVKYHKDENSDLS----------- 199
Query: 206 ELISFAGGSKDGGGYTVVGFEVVPCSVEHDAAAIKGKKMYDELPARAAAGCDPSVVGMRV 265
+VGFEV P SV+H + ++ +++ R + C P + +
Sbjct: 200 ---------------RIVGFEVKPFSVKH-----QFEEKWNDANTRLST-CHPHANKIII 238
Query: 266 RANRP--------LVFSYEVAFVESGVEWPSRWDAYLEMGGAKVHWFSILNSXXXXXXXX 317
++ P ++F+Y+V F ES ++W SRWD YL M ++HWFSI+NS
Sbjct: 239 NSDTPQEVEAGKDIIFTYDVGFEESDIKWASRWDTYLLMTDDQIHWFSIVNSLMIVLFLS 298
Query: 318 XXXXXXXXXXXXXDLAQYDEHGGEAGLAPQADELAGWKLVAGDVFREPAHHPL 370
D+++Y+ + +A E GWKLV GDVFR P + L
Sbjct: 299 GMVAMIMLRTLYRDISRYN----QLETEEEAQEETGWKLVHGDVFRPPTNSDL 347
>Os09g0557800 Similar to PHG1A protein
Length = 646
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 176/358 (49%), Gaps = 62/358 (17%)
Query: 31 FYLPGSYPHRYRPGEALAAKVNSLTSPSSKLPFPYYSLPFCAPQGGVNRAAESLGELLLG 90
FYLPG P + G++L KVN LTS ++LP+ YYSLPFC P+ V+ +AE+LGE+L G
Sbjct: 34 FYLPGVAPTDFGKGDSLPVKVNKLTSVKTQLPYAYYSLPFCKPETIVD-SAENLGEVLRG 92
Query: 91 DRIETSPYRFSMLK-NATAFLCRTDPLPPATADLLMFRIDDAYHVNLLLDTLP----VVR 145
DRIE SPY F M + +C+ + A L +I+D Y VN++LD LP V+R
Sbjct: 93 DRIENSPYVFQMREPKMCQIVCKL-TVGEKEAKELKEKIEDEYRVNMILDNLPLVVSVLR 151
Query: 146 YVKNLAAPGVFVRSTGFPVGVR-----ADDGEYYVYNHLKLTVLVNKPRNGTTRAEALMA 200
KN+A G G+ VGV+ + + +Y+++NHL V +K
Sbjct: 152 QDKNIAYQG------GYHVGVKGQYTGSKEEKYFIHNHLSFLVKYHK------------- 192
Query: 201 TADAVELISFAGGSKDGGGYTVVGFEVVPCSVEHDAAAIKGKKMYDELPARAAAGCDPSV 260
D +VGFEV P S++H +D + R + CDP
Sbjct: 193 -------------DDDSELSRIVGFEVKPYSIKHQL-----DDKWDGVNTRLST-CDPHA 233
Query: 261 VGM--------RVRANRPLVFSYEVAFVESGVEWPSRWDAYLEMGGAKVHWFSILNSXXX 312
+ V A + ++F+Y+V F ES ++W SRWD YL M ++HWFSI+NS
Sbjct: 234 NKLVTSSDSPQEVEAGKEIIFTYDVHFEESDIKWASRWDTYLLMTDDQIHWFSIVNSLMI 293
Query: 313 XXXXXXXXXXXXXXXXXXDLAQYDEHGGEAGLAPQADELAGWKLVAGDVFREPAHHPL 370
D+++Y+ + +A E GWKLV GDVFR P + L
Sbjct: 294 VLFLSGMVAMIMLRTLYRDISRYN----QLETQEEAQEETGWKLVHGDVFRPPTNSDL 347
>AK061096
Length = 524
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 113/261 (43%), Gaps = 56/261 (21%)
Query: 128 IDDAYHVNLLLDTLPVVRYVKNLAAPGVFVRSTGFPVGVRADDGEYYVYNHLKLTVLVNK 187
I D Y+V ++D LPV+ G + R GFPVG G +++YNH+++ +L NK
Sbjct: 2 IKDEYYVQWVVDNLPVLYRDPADQQLGSYKR--GFPVGETDAQGRFFLYNHIRIIILTNK 59
Query: 188 ----PRNGTTRAEALMATADAVELISFAGGSKDGGGYTVVGFEVVPCSVEHDAAA--IKG 241
G T+ + VVGFEVVP S++HD + G
Sbjct: 60 DPYAAEEGKTK-------------------------FRVVGFEVVPTSIKHDYENEPLAG 94
Query: 242 KKM----------YDELPARAAAGCDPSVVGMRVRANRPLVFSYEVAFVESGVEWPSRWD 291
+++ +E+ DP+ + ++F+Y+V F S + W RWD
Sbjct: 95 QELETKTCGKFVNIEEVAVNNHQYLDPA-------KDTTVLFTYDVQFQPSDILWEERWD 147
Query: 292 AYLEMGGA--KVHWFSILNSXXXXXXXXXXXXXXXXXXXXXDLAQYDEHGGEAGLAPQAD 349
+ + K+HWFSI+NS D+A+Y+E +A
Sbjct: 148 RIISSKSSNDKIHWFSIINSLMIVLFLTGMIAMIMLRTLHRDIARYNE----VQTTEEAQ 203
Query: 350 ELAGWKLVAGDVFREPAHHPL 370
E +GWKLV GDVFR P PL
Sbjct: 204 EESGWKLVHGDVFRPPQFSPL 224
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,724,440
Number of extensions: 589954
Number of successful extensions: 1451
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1418
Number of HSP's successfully gapped: 9
Length of query: 667
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 560
Effective length of database: 11,448,903
Effective search space: 6411385680
Effective search space used: 6411385680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)