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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0288400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nonaspanin (TM9SF) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0336) R2 : 0.000746
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0412 (0.0707) R2dN8 : 0.000963 R2N8 : 0.000746
σ : 0.632
deviance : 183.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
175.47 0.622 3.03 -0.452 0.202 -0.159 0.972 -1.13 -0.0765 16.2 24.39 216 -- --
178.37 0.622 2.99 -0.0539 0.152 -0.215 0.629 -- 0.0232 15.6 23.4 163 -- --
176.95 0.62 3.01 -0.364 0.149 -0.185 -- -0.736 -0.0364 16 23.8 200 -- --
178.29 0.622 2.99 -0.0343 0.169 -0.221 -- -- 0.0307 15.2 23.4 163 -- --
178.31 0.622 3.01 -0.322 -- -0.17 -- -0.671 -0.0398 -- 23.72 200 -- --
181.67 0.632 3.01 -0.148 0.121 -- 0.323 -- -0.0562 15.5 -- -- -- --
181.91 0.632 3.01 -0.142 0.125 -- -- -- -0.0545 14.4 -- -- -- --
180.09 0.625 2.99 -0.0681 -- -0.198 -- -- 0.0266 -- 23.46 163 -- --
178.21 0.622 2.98 -- 0.19 -0.245 -- -- 0.0549 14.4 23.43 146 -- --
182.83 0.632 3.01 -0.147 -- -- -- -- -0.0575 -- -- -- -- --
182.45 0.632 3 -- 0.127 -- -- -- -0.0387 14.4 -- -- -- --
180.21 0.625 2.99 -- -- -0.208 -- -- 0.0378 -- 23.5 163 -- --
183.41 0.632 3 -- -- -- -- -- -0.0412 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.29 humidity 90.0 30 < th dose independent rect. 12 2
2 161.77 humidity 60.0 90 > th dose independent rect. 12 2
3 162.01 wind 9.0 30 < th dose independent rect. 12 2
4 162.01 wind 9.0 30 < th dose independent rect. 14 22
5 162.04 wind 1.0 30 > th dose independent rect. 14 22
9 162.17 temperature 10.0 1440 > th dose independent rect. 13 2
13 162.17 temperature 10.0 1440 > th dose independent rect. 15 22
17 162.29 atmosphere 1000.0 30 > th dose independent rect. 12 2
18 162.34 atmosphere 1000.0 30 > th dose independent rect. 14 22
19 162.36 temperature 30.0 90 < th dose independent rect. 12 2
20 162.39 atmosphere 1010.0 30 < th dose independent rect. 12 2
21 162.41 precipitation 0.1 30 < th dose independent rect. 14 22
22 162.41 precipitation 0.1 30 < th dose dependent rect. 14 22
23 162.43 temperature 10.0 30 > th dose independent rect. 12 2
27 162.43 precipitation 0.1 30 < th dose independent rect. 12 2
28 162.43 temperature 10.0 30 > th dose independent rect. 14 22
29 162.43 precipitation 0.1 30 < th dose dependent rect. 12 2
34 162.65 wind 1.0 30 > th dose independent rect. 12 2
38 162.79 humidity 50.0 30 > th dose independent rect. 14 22
60 163.14 temperature 10.0 30 > th dose dependent rect. 12 2
74 163.29 radiation 1.0 30 > th dose independent rect. 12 2
77 163.46 atmosphere 995.0 90 > th dose dependent rect. 12 2
92 164.08 atmosphere 1015.0 30 < th dose dependent rect. 12 2
115 164.66 wind 1.0 30 > th dose dependent rect. 12 2
128 164.97 atmosphere 995.0 1440 > th dose independent rect. 13 2
130 165.01 temperature 30.0 30 < th dose independent rect. 14 22
133 165.02 radiation 40.0 90 < th dose independent rect. 12 1
166 165.66 wind 9.0 90 < th dose dependent rect. 12 2
171 165.78 radiation 1.0 90 > th dose independent rect. 14 22
197 166.13 humidity 50.0 90 > th dose dependent rect. 12 2
204 166.34 temperature 25.0 10 > th dose dependent rect. 13 1
205 166.38 atmosphere 1015.0 30 < th dose independent rect. 14 22
233 166.98 humidity 90.0 30 < th dose dependent rect. 12 2
277 167.17 wind 3.0 30 > th dose independent rect. 1 1
316 167.50 radiation 1.0 10 > th dose dependent rect. 13 1
334 167.68 radiation 1.0 30 > th dose independent rect. 5 7
366 167.82 wind 1.0 10 > th dose independent rect. 3 9
374 167.95 humidity 70.0 10 < th dose independent rect. 12 2
377 168.02 wind 1.0 90 > th dose independent rect. 12 15
400 168.35 wind 9.0 90 < th dose independent rect. 12 15
404 168.37 radiation 1.0 90 > th dose dependent rect. 12 2
409 168.45 atmosphere 995.0 90 > th dose independent rect. 12 15
412 168.49 humidity 50.0 90 > th dose independent rect. 3 9
413 168.50 wind 9.0 90 < th dose independent rect. 3 9
416 168.52 precipitation 0.1 90 < th dose independent rect. 3 9
419 168.52 precipitation 0.1 90 < th dose dependent rect. 3 9
423 168.57 precipitation 0.1 90 < th dose independent rect. 12 15
424 168.57 precipitation 0.1 90 < th dose dependent rect. 12 15
427 168.61 temperature 10.0 90 > th dose independent rect. 3 9
428 168.61 atmosphere 995.0 90 > th dose independent rect. 3 9
429 168.61 atmosphere 1015.0 90 < th dose independent rect. 3 9
430 168.61 temperature 10.0 90 > th dose independent rect. 12 15
466 168.99 temperature 10.0 10 > th dose dependent rect. 3 9
479 169.12 temperature 10.0 30 > th dose dependent rect. 12 15
515 169.52 wind 1.0 10 > th dose independent rect. 18 18
521 169.55 wind 1.0 90 > th dose dependent rect. 1 2
547 169.63 temperature 10.0 30 > th dose dependent rect. 14 22
571 169.84 wind 1.0 10 > th dose independent rect. 23 13
572 169.85 humidity 50.0 90 > th dose independent rect. 12 15
585 170.01 temperature 30.0 90 < th dose dependent rect. 12 1
586 170.03 wind 1.0 10 > th dose independent rect. 21 15
609 170.16 temperature 10.0 1440 > th dose independent rect. 5 8
612 170.16 atmosphere 995.0 1440 > th dose independent rect. 5 8
614 170.16 temperature 10.0 1440 > th dose independent rect. 13 16
618 170.17 wind 9.0 30 < th dose independent rect. 6 6
625 170.20 wind 9.0 30 < th dose independent rect. 12 18
641 170.26 temperature 10.0 10 > th dose dependent rect. 12 11
658 170.33 atmosphere 995.0 30 > th dose independent rect. 12 18
700 170.42 humidity 50.0 30 > th dose independent rect. 6 6
702 170.43 temperature 10.0 30 > th dose independent rect. 6 6
704 170.43 atmosphere 995.0 30 > th dose independent rect. 6 6
705 170.43 atmosphere 1015.0 30 < th dose independent rect. 6 6
706 170.43 precipitation 0.1 30 < th dose independent rect. 6 6
707 170.43 temperature 10.0 30 > th dose independent rect. 12 18
708 170.43 precipitation 0.1 30 < th dose independent rect. 12 18
709 170.43 precipitation 0.1 30 < th dose dependent rect. 6 6
710 170.43 precipitation 0.1 30 < th dose dependent rect. 12 18
713 170.45 temperature 10.0 1440 > th dose independent rect. 7 6
716 170.45 atmosphere 995.0 1440 > th dose independent rect. 7 6
717 170.45 temperature 10.0 1440 > th dose independent rect. 13 18
728 170.47 temperature 30.0 90 < th dose independent rect. 3 9
731 170.48 humidity 50.0 30 > th dose independent rect. 12 18
780 170.60 humidity 50.0 30 > th dose independent rect. 1 13
789 170.63 atmosphere 995.0 30 > th dose dependent rect. 14 22
805 170.72 humidity 90.0 10 < th dose independent rect. 3 9
822 170.77 wind 1.0 30 > th dose independent rect. 6 6
823 170.79 humidity 90.0 90 < th dose independent rect. 1 1
850 170.87 temperature 10.0 1440 > th dose independent rect. 15 11
853 170.87 temperature 10.0 1440 > th dose independent rect. 2 13
875 170.94 temperature 30.0 90 < th dose independent rect. 12 15
883 170.97 wind 9.0 90 < th dose independent rect. 1 13
909 171.03 wind 9.0 10 < th dose independent rect. 12 20
917 171.06 humidity 90.0 10 < th dose independent rect. 12 11
921 171.09 humidity 90.0 10 < th dose independent rect. 12 6
968 171.21 atmosphere 1000.0 10 > th dose independent rect. 8 4
971 171.23 humidity 80.0 270 < th dose independent rect. 22 1
976 171.26 wind 9.0 30 < th dose independent rect. 8 4
977 171.26 wind 9.0 10 < th dose independent rect. 12 6
980 171.28 wind 9.0 30 < th dose independent rect. 21 15
986 171.29 precipitation 0.1 30 < th dose independent rect. 1 13
988 171.29 precipitation 0.1 30 < th dose dependent rect. 1 13
989 171.30 humidity 50.0 30 > th dose independent rect. 8 4
991 171.32 atmosphere 995.0 10 > th dose independent rect. 12 20
1000 171.35 temperature 10.0 10 > th dose independent rect. 8 4