Os05g0168500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nonaspanin (TM9SF) family protein.
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Os05g0168500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nonaspanin (TM9SF) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.61 | 0.292 | 11.8 | 1.49 | 0.104 | 1.28 | 1.15 | 2.61 | 0.455 | 22.5 | 0.8145 | 1346 | -- | -- |
| 40.81 | 0.298 | 11.8 | 1.67 | 0.136 | 0.841 | 0.623 | -- | 0.472 | 22.5 | 1.866 | 1259 | -- | -- |
| 41.91 | 0.302 | 11.8 | 1.46 | 0.274 | 0.756 | -- | 1.4 | 0.436 | 9.7 | 2.18 | 1499 | -- | -- |
| 42.11 | 0.302 | 11.8 | 1.65 | 0.122 | 0.83 | -- | -- | 0.492 | 23.3 | 2.163 | 1268 | -- | -- |
| 42.41 | 0.303 | 11.8 | 1.47 | -- | 0.768 | -- | 1.22 | 0.425 | -- | 0.9555 | 1367 | -- | -- |
| 45.9 | 0.318 | 11.8 | 1.54 | 0.203 | -- | -0.566 | -- | 0.407 | 9.24 | -- | -- | -- | -- |
| 47.04 | 0.321 | 11.8 | 1.52 | 0.205 | -- | -- | -- | 0.406 | 9.41 | -- | -- | -- | -- |
| 42.28 | 0.303 | 11.8 | 1.66 | -- | 0.723 | -- | -- | 0.478 | -- | 2.197 | 1315 | -- | -- |
| 102.87 | 0.472 | 11.8 | -- | 0.255 | 0.611 | -- | -- | 0.328 | 10.2 | 10 | 4484 | -- | -- |
| 49.5 | 0.329 | 11.8 | 1.52 | -- | -- | -- | -- | 0.407 | -- | -- | -- | -- | -- |
| 108.02 | 0.486 | 11.8 | -- | 0.206 | -- | -- | -- | 0.237 | 8.85 | -- | -- | -- | -- |
| 103.05 | 0.473 | 11.8 | -- | -- | 0.588 | -- | -- | 0.409 | -- | 20 | 9458 | -- | -- |
| 110.44 | 0.491 | 11.8 | -- | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.24 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 4 | 38.30 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 10 | 38.36 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 13 | 38.38 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 50 | 38.73 | temperature | 25.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 51 | 38.75 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 65 | 38.89 | temperature | 25.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 68 | 38.89 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 89 | 38.98 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 103 | 39.04 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 2 | 8 |
| 108 | 39.08 | temperature | 25.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 112 | 39.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 117 | 39.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 134 | 39.11 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 165 | 39.13 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 166 | 39.13 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 196 | 39.17 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 206 | 39.19 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 218 | 39.20 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 242 | 39.22 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 304 | 39.30 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 314 | 39.30 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 12 |
| 381 | 39.35 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 444 | 39.40 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 514 | 39.46 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 521 | 39.46 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 16 | NA |
| 535 | 39.47 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 552 | 39.48 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 606 | 39.53 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 649 | 39.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 669 | 39.57 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 688 | 39.58 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 712 | 39.60 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 723 | 39.61 | temperature | 25.0 | 1440 | > th | dose independent | no | NA | NA |
| 724 | 39.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 732 | 39.61 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 736 | 39.61 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 737 | 39.61 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 739 | 39.61 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 740 | 39.61 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 743 | 39.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 752 | 39.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 782 | 39.64 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 872 | 39.69 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 924 | 39.71 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 934 | 39.72 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 945 | 39.72 | temperature | 20.0 | 30 | > th | dose dependent | sin | 5 | NA |
| 966 | 39.73 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 13 |