BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0205400 Os08g0205400|J100019D18
(81 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0205400 Heavy metal transport/detoxification protein d... 162 5e-41
Os02g0530100 Heavy metal transport/detoxification protein d... 108 1e-24
Os03g0819400 Heavy metal transport/detoxification protein d... 74 2e-14
Os01g0976300 Heavy metal transport/detoxification protein d... 74 2e-14
Os08g0405700 Similar to Copper chaperone homolog CCH 66 6e-12
Os03g0120400 Heavy metal transport/detoxification protein d... 64 2e-11
Os01g0719600 Heavy metal transport/detoxification protein d... 64 2e-11
Os05g0150700 Heavy metal transport/detoxification protein d... 64 2e-11
Os08g0403300 Heavy metal transport/detoxification protein d... 62 7e-11
>Os08g0205400 Heavy metal transport/detoxification protein domain containing
protein
Length = 81
Score = 162 bits (410), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MAETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKT 60
MAETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKT
Sbjct: 1 MAETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKT 60
Query: 61 GKKTSFWDAEPAPVEATAASS 81
GKKTSFWDAEPAPVEATAASS
Sbjct: 61 GKKTSFWDAEPAPVEATAASS 81
>Os02g0530100 Heavy metal transport/detoxification protein domain containing
protein
Length = 252
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 60/65 (92%)
Query: 3 ETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGK 62
+TVVL+VGMSC+GC GAV+RVL KM+GVE+FD+D+++QKVTVKGNV P+ V QTVSKTGK
Sbjct: 124 KTVVLKVGMSCQGCAGAVRRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGK 183
Query: 63 KTSFW 67
KTSFW
Sbjct: 184 KTSFW 188
>Os03g0819400 Heavy metal transport/detoxification protein domain containing
protein
Length = 203
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 3 ETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGK 62
+ VVL+V + C+ C G VK+ L KM+GV SF++D +KVTV G+VTP VL +VSK K
Sbjct: 132 QVVVLKVSLHCKACAGKVKKHLAKMEGVTSFNIDFAAKKVTVVGDVTPLGVLNSVSKV-K 190
Query: 63 KTSFWDAEPA 72
FW A PA
Sbjct: 191 NAQFWAAPPA 200
>Os01g0976300 Heavy metal transport/detoxification protein domain containing
protein
Length = 204
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 3 ETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGK 62
E VVLRV + C+GC G VK+ + KM+GV S D+DI +KVTV G+VTP +VL VSK K
Sbjct: 124 EVVVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSKI-K 182
Query: 63 KTSFW 67
FW
Sbjct: 183 PAQFW 187
>Os08g0405700 Similar to Copper chaperone homolog CCH
Length = 205
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 46/65 (70%)
Query: 3 ETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGK 62
+ VV++V + C+GC G V++ + KM+GV SF +D++ +KVTV G+V+P VL+++SK K
Sbjct: 140 QVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVTVMGHVSPAGVLESISKVKK 199
Query: 63 KTSFW 67
+
Sbjct: 200 AELLF 204
>Os03g0120400 Heavy metal transport/detoxification protein domain containing
protein
Length = 193
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 3 ETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGK 62
+TV L+V M C GC VK L K++GV+S +V+++ +KVTV G V VL+ V + GK
Sbjct: 63 QTVELKVRMCCSGCERVVKHALMKLRGVDSVEVELEMEKVTVTGYVERQRVLKEVRRAGK 122
Query: 63 KTSFWDAEPAPVEATAA 79
K FW P+ T+A
Sbjct: 123 KAEFWPNPDLPLYFTSA 139
>Os01g0719600 Heavy metal transport/detoxification protein domain containing
protein
Length = 142
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 4 TVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGKK 63
TV LRV M C GC V++ + KM GV SF+VD++ +KV V G++TP VL +VSK K
Sbjct: 71 TVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEVLASVSKVMKF 130
Query: 64 TSFWDA 69
W A
Sbjct: 131 AELWVA 136
>Os05g0150700 Heavy metal transport/detoxification protein domain containing
protein
Length = 368
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 3 ETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGK 62
+T+ L+V + CEGC VK+VL ++GV D+D++ QKV V GNV+ D +++ + KTGK
Sbjct: 14 QTLALKVSIHCEGCKKKVKKVLHSIEGVYKTDIDVQHQKVVVIGNVSVDTLVKKLVKTGK 73
Query: 63 KTSFW 67
W
Sbjct: 74 HAEPW 78
>Os08g0403300 Heavy metal transport/detoxification protein domain containing
protein
Length = 150
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 3 ETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGK 62
TV L+V M C+GC V+ L M+GV+S +++ K+QKVTV+G V VL+ TGK
Sbjct: 29 NTVELKVRMDCDGCELKVRNTLANMKGVQSVEINRKQQKVTVQGMVDTQRVLRRAQSTGK 88
Query: 63 KTSFWDAEP 71
+T W P
Sbjct: 89 RTELWPYVP 97
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.126 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,315,993
Number of extensions: 66393
Number of successful extensions: 219
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 12
Length of query: 81
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 30
Effective length of database: 14,372,887
Effective search space: 431186610
Effective search space used: 431186610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)