FiT-DB / Search/ Help/ Sample detail

Os03g0819400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0275) R2 : 0.703
β1 : -1.34 (0.103) R2dD : 0.124 R2D : 0.0772
β2 : 1.39 (0.0756) R2dC : 0.306 R2C : 0.509
β3 : 1.79 (0.159) R2dE : 0.131 R2E : 0.268
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.132 (0.0617) R2dN8 : 0.00461 R2N8 : -0.0148
σ : 0.505
deviance : 117.37
__
_____
C
peak time of C : 12.8
E
wheather : temperature
threshold : 11.98
memory length : 19
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.87 0.481 11.8 -2.12 1.38 1.61 1.09 -4.69 -0.353 12.7 19.78 19 -- --
117.27 0.504 11.7 -1.33 1.39 1.8 -0.155 -- -0.128 12.8 11.99 19 -- --
108.38 0.485 11.8 -1.92 1.35 1.63 -- -3.45 -0.272 12.7 18.65 39 -- --
117.37 0.505 11.7 -1.34 1.39 1.79 -- -- -0.132 12.8 11.98 19 -- --
190.92 0.647 11.9 -2.16 -- 2.86 -- -3.4 -0.512 -- 18.65 39 -- --
147.65 0.57 11.7 -0.987 1.86 -- 0.00767 -- 0.121 13.2 -- -- -- --
147.65 0.569 11.7 -0.987 1.86 -- -- -- 0.121 13.2 -- -- -- --
201.98 0.662 11.8 -1.67 -- 3.35 -- -- -0.363 -- 8.658 7 -- --
159.71 0.592 11.7 -- 1.57 1.1 -- -- 0.0964 13 15.2 90 -- --
361.9 0.889 11.7 -1.06 -- -- -- -- 0.0835 -- -- -- -- --
173.31 0.616 11.6 -- 1.88 -- -- -- 0.231 13.2 -- -- -- --
270.61 0.769 11.7 -- -- 2.72 -- -- -0.118 -- 15.2 90 -- --
391.46 0.924 11.7 -- -- -- -- -- 0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.16 temperature 30 30 < th dose dependent rect. 7 23
3 99.72 temperature 10 720 > th dose dependent rect. 21 19
5 100.25 wind 7 43200 > th dose dependent rect. 18 2
13 100.97 temperature 10 270 > th dose dependent rect. 2 23
17 101.17 wind 7 43200 > th dose independent rect. 18 1
24 101.52 wind 7 43200 < th dose independent rect. 18 2
34 101.91 wind 9 43200 < th dose independent rect. 18 4
39 102.18 wind 9 43200 > th dose independent rect. 18 4
52 102.80 wind 7 43200 < th dose independent rect. 15 12
60 103.05 wind 7 43200 > th dose independent rect. 15 12
65 103.32 wind 7 43200 > th dose independent rect. 15 17
66 103.34 wind 5 43200 > th dose dependent rect. 15 11
69 103.40 wind 7 43200 < th dose independent rect. 15 17
71 103.42 wind 9 43200 > th dose independent rect. 17 8
83 103.59 wind 9 43200 < th dose independent rect. 18 7
85 103.62 temperature 25 270 < th dose dependent rect. 23 21
95 103.76 temperature 10 720 > th dose dependent rect. 12 21
120 104.00 temperature 30 30 < th dose dependent rect. 9 23
133 104.13 wind 7 43200 < th dose independent rect. 15 6
147 104.23 wind 9 43200 > th dose dependent rect. 17 8
159 104.35 wind 5 43200 > th dose dependent rect. 15 6
169 104.38 temperature 20 10 > th dose dependent rect. 21 23
196 104.61 temperature 20 90 > th dose dependent rect. 23 23
218 104.74 wind 5 43200 > th dose dependent rect. 14 17
231 104.81 wind 7 43200 < th dose independent sin 14 NA
234 104.81 temperature 15 10 > th dose dependent rect. 6 14
246 104.87 wind 7 43200 > th dose independent rect. 15 6
249 104.88 wind 7 43200 > th dose independent sin 13 NA
290 105.07 temperature 20 10 > th dose dependent no NA NA
310 105.14 temperature 20 10 > th dose dependent rect. 23 23
333 105.23 wind 5 43200 > th dose dependent sin 15 NA
352 105.34 wind 7 43200 > th dose dependent sin 13 NA
358 105.37 wind 5 43200 > th dose independent sin 16 NA
388 105.45 temperature 30 10 < th dose dependent rect. 1 23
405 105.52 temperature 15 720 > th dose dependent sin 6 NA
411 105.53 temperature 30 10 < th dose dependent rect. 15 23
437 105.63 temperature 20 1440 > th dose dependent rect. 13 6
440 105.65 temperature 20 90 > th dose dependent rect. 11 23
451 105.70 wind 9 43200 > th dose dependent rect. 22 1
473 105.76 temperature 25 720 < th dose dependent rect. 21 17
485 105.80 temperature 20 1440 > th dose dependent rect. 13 8
501 105.84 temperature 30 10 < th dose dependent no NA NA
518 105.88 temperature 30 10 < th dose dependent rect. 11 23
534 105.94 wind 7 43200 < th dose independent rect. 15 1
576 106.06 temperature 30 720 < th dose dependent rect. 15 21
618 106.19 temperature 30 30 < th dose dependent rect. 13 23
623 106.21 temperature 15 720 > th dose dependent no NA NA
627 106.22 temperature 20 10 > th dose dependent rect. 2 23
674 106.33 radiation 20 14400 > th dose dependent rect. 17 14
691 106.38 radiation 1 4320 < th dose dependent rect. 17 1
768 106.58 temperature 25 720 < th dose dependent sin 6 NA
818 106.71 wind 5 43200 > th dose dependent rect. 15 1
826 106.72 temperature 20 10 > th dose dependent rect. 23 21
830 106.73 radiation 10 14400 < th dose independent rect. 20 10
858 106.77 radiation 20 14400 > th dose dependent rect. 6 1
884 106.81 radiation 10 14400 < th dose independent rect. 4 2
944 106.93 wind 7 43200 > th dose independent rect. 15 1