Os08g0405700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Copper chaperone homolog CCH.
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Os08g0405700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Copper chaperone homolog CCH.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.34 | 0.667 | 8.75 | -2.11 | 3.38 | -2.93 | 2.7 | -0.75 | -0.534 | 9.5 | 8.668 | 287 | 22.8 | 17.5 |
| 201.45 | 0.661 | 8.74 | -2.02 | 3.37 | -2.97 | 2.37 | -- | -0.51 | 9.49 | 8.75 | 301 | 22.7 | 17.6 |
| 213.57 | 0.681 | 8.7 | -1.77 | 3.4 | -2.94 | -- | 2.21 | -0.446 | 9.5 | 7.775 | 292 | 22.8 | 17.5 |
| 221.97 | 0.694 | 8.74 | -1.94 | 3.31 | -2.93 | -- | -- | -0.505 | 9.51 | 8.424 | 292 | 22.7 | 17.8 |
| 273.04 | 0.77 | 8.92 | -2.62 | -- | -3.07 | -- | -5.46 | -0.685 | -- | -72.06 | 2188 | 3.17 | 20.2 |
| 295.34 | 0.806 | 8.83 | -2.42 | 2.09 | -- | 2.54 | -- | -0.754 | 8.35 | -- | -- | -- | -- |
| 315.55 | 0.832 | 8.83 | -2.34 | 2.08 | -- | -- | -- | -0.755 | 8.34 | -- | -- | -- | -- |
| 250.42 | 0.737 | 8.93 | -1.99 | -- | -2.62 | -- | -- | -0.747 | -- | -153.8 | 1999 | 5.67 | 20.9 |
| 315.96 | 0.828 | 8.69 | -- | 3.5 | -3.39 | -- | -- | -0.259 | 9.59 | 9.651 | 292 | 22.5 | 18 |
| 556.1 | 1.1 | 8.88 | -2.33 | -- | -- | -- | -- | -0.733 | -- | -- | -- | -- | -- |
| 460.17 | 1 | 8.77 | -- | 2.07 | -- | -- | -- | -0.494 | 8.42 | -- | -- | -- | -- |
| 321.85 | 0.836 | 8.78 | -- | -- | -3.67 | -- | -- | -0.171 | -- | -545.8 | 2028 | 4.38 | 23.5 |
| 699.29 | 1.23 | 8.82 | -- | -- | -- | -- | -- | -0.474 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 203.61 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 6 | 206.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 26 | 214.91 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 7 |
| 34 | 216.49 | humidity | 60.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 40 | 219.33 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 17 |
| 41 | 219.33 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 19 |
| 42 | 219.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 16 |
| 54 | 221.05 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 19 |
| 75 | 223.12 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 21 |
| 97 | 224.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 140 | 227.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 164 | 228.46 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 169 | 228.58 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 7 |
| 183 | 229.04 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 16 | 7 |
| 203 | 229.81 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 212 | 230.07 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 16 |
| 243 | 231.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 15 |
| 244 | 231.08 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 19 |
| 300 | 232.19 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 7 |
| 313 | 232.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 325 | 232.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 9 |
| 326 | 232.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 348 | 233.29 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 361 | 233.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 15 |
| 374 | 233.78 | temperature | 15.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 380 | 233.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 397 | 234.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 398 | 234.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 399 | 234.13 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 400 | 234.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 15 |
| 425 | 234.41 | temperature | 20.0 | 270 | > th | dose dependent | no | NA | NA |
| 441 | 234.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 21 |
| 447 | 234.78 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 7 |
| 456 | 234.95 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 7 |
| 472 | 235.25 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 478 | 235.34 | temperature | 30.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 497 | 235.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 511 | 235.75 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 520 | 235.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 531 | 235.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 7 |
| 552 | 236.32 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 559 | 236.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 15 |
| 560 | 236.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 593 | 236.90 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 6 |
| 658 | 237.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 17 |
| 659 | 237.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 719 | 238.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 7 |
| 720 | 238.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 7 |
| 732 | 238.61 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 17 | 5 |
| 733 | 238.62 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 18 |
| 754 | 238.92 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 6 |
| 781 | 239.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 827 | 239.75 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 869 | 240.12 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 875 | 240.20 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 915 | 240.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 951 | 240.99 | wind | 9.0 | 270 | < th | dose dependent | rect. | 16 | 7 |
| 990 | 241.35 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 3 |
| 999 | 241.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 14 |