BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0405700 Os08g0405700|AK108256
(205 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0405700 Similar to Copper chaperone homolog CCH 273 5e-74
Os03g0819400 Heavy metal transport/detoxification protein d... 95 3e-20
Os01g0976300 Heavy metal transport/detoxification protein d... 93 2e-19
Os05g0534500 Phosphatidylinositol-specific phospholipase C,... 84 7e-17
Os01g0719600 Heavy metal transport/detoxification protein d... 80 7e-16
Os02g0530100 Heavy metal transport/detoxification protein d... 72 2e-13
Os08g0205400 Heavy metal transport/detoxification protein d... 65 2e-11
>Os08g0405700 Similar to Copper chaperone homolog CCH
Length = 205
Score = 273 bits (699), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 147/205 (71%), Positives = 147/205 (71%)
Query: 1 MRAGGMLCRSQAATAVCVPGDARSMIVSRRADRTIAEDARLAHDVXXXXXXXXXXXXXXX 60
MRAGGMLCRSQAATAVCVPGDARSMIVSRRADRTIAEDARLAHDV
Sbjct: 1 MRAGGMLCRSQAATAVCVPGDARSMIVSRRADRTIAEDARLAHDVRYARLGAAASAGGAR 60
Query: 61 VPSRRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGVAVTFPMVTKSPKETPAREMXXX 120
VPSRRF GAGVAVTFPMVTKSPKETPAREM
Sbjct: 61 VPSRRFAAPRQALTPPPPPPPPPQPPKQHRRPRRGAGVAVTFPMVTKSPKETPAREMAAA 120
Query: 121 XXXXXXXXXXXXSPGDQVLQVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVT 180
SPGDQVLQVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVT
Sbjct: 121 AAAAKRAPLAAASPGDQVLQVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVT 180
Query: 181 VMGHVSPAGVLESISKVKKAELLFL 205
VMGHVSPAGVLESISKVKKAELLFL
Sbjct: 181 VMGHVSPAGVLESISKVKKAELLFL 205
>Os03g0819400 Heavy metal transport/detoxification protein domain containing
protein
Length = 203
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 55/64 (85%)
Query: 140 QVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVTVMGHVSPAGVLESISKVKK 199
QVVV+KV++HC+ CAGKV+KH++KMEGVTSF+ID +KKVTV+G V+P GVL S+SKVK
Sbjct: 132 QVVVLKVSLHCKACAGKVKKHLAKMEGVTSFNIDFAAKKVTVVGDVTPLGVLNSVSKVKN 191
Query: 200 AELL 203
A+
Sbjct: 192 AQFW 195
>Os01g0976300 Heavy metal transport/detoxification protein domain containing
protein
Length = 204
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 56/65 (86%)
Query: 139 LQVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVTVMGHVSPAGVLESISKVK 198
++VVV++V++HC+GCAGKV+KHISKMEGVTS ID+ +KKVTV+GHV+P VL ++SK+K
Sbjct: 123 VEVVVLRVSLHCKGCAGKVKKHISKMEGVTSLDIDIATKKVTVVGHVTPLSVLTAVSKIK 182
Query: 199 KAELL 203
A+
Sbjct: 183 PAQFW 187
>Os05g0534500 Phosphatidylinositol-specific phospholipase C, X region domain
containing protein
Length = 160
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%)
Query: 140 QVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVTVMGHVSPAGVLESISKVKK 199
+ V +KV++HC GCA KV+KHIS+MEGVT F +DLE KKV V G V+P VL+SISKVK
Sbjct: 82 KTVELKVSMHCNGCAKKVQKHISRMEGVTWFEVDLEKKKVVVTGDVTPLEVLQSISKVKF 141
Query: 200 AELL 203
A+L
Sbjct: 142 AQLW 145
>Os01g0719600 Heavy metal transport/detoxification protein domain containing
protein
Length = 142
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 140 QVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVTVMGHVSPAGVLESISKVKK 199
+ V ++V++HC GCA KV+KHISKM+GVTSF +DLESKKV V+G ++P VL S+SKV K
Sbjct: 70 KTVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEVLASVSKVMK 129
Query: 200 -AELL 203
AEL
Sbjct: 130 FAELW 134
>Os02g0530100 Heavy metal transport/detoxification protein domain containing
protein
Length = 252
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 140 QVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVTVMGHVSPAGVLESISKVKK 199
+ VV+KV + CQGCAG VR+ ++KMEGV +F ID+E +KVTV G+V P V +++SK K
Sbjct: 124 KTVVLKVGMSCQGCAGAVRRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGK 183
>Os08g0205400 Heavy metal transport/detoxification protein domain containing
protein
Length = 81
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 46/65 (70%)
Query: 140 QVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVTVMGHVSPAGVLESISKVKK 199
+ VV++V + C+GC G V++ + KM+GV SF +D++ +KVTV G+V+P VL+++SK K
Sbjct: 3 ETVVLRVGMSCEGCVGAVKRVLGKMQGVESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGK 62
Query: 200 AELLF 204
+
Sbjct: 63 KTSFW 67
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.131 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,484,683
Number of extensions: 111540
Number of successful extensions: 274
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 7
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)