Os08g0403300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0403300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.35	(0.0714)	R²	:	0.603
β₁	:	-1.78	(0.273)	R²_dD	:	0.0435	R²_D	:	-0.00643
β₂	:	3.98	(0.17)	R²_dC	:	0.478	R²_C	:	0.452
β₃	:	-0.278	(0.332)	R²_dE	:	0.000883	R²_E	:	-0.0067
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-10.2	(1.35)	R²_dD*E	:	0.0709	R²_D*E	:	0.0494
γ₁	:	-1.08	(0.156)	R²_dN8	:	0.0607	R²_N8	:	0.0259
σ	:	1.31
deviance	:	790.77
__

_____

C
peak time of C	:	9.81
E
wheather	:	atmosphere
threshold	:	1005
memory length	:	7793
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
787.4	1.32	6.35	-1.74	3.98	-0.291	-0.94	-10.2	-1.08	9.81	1005	7745	--	--
875.69	1.38	6.22	-0.876	4.04	-1.73	-1.25	--	-1.02	9.76	1105	13863	--	--
790.77	1.31	6.35	-1.78	3.98	-0.278	--	-10.2	-1.08	9.81	1005	7793	--	--
866.53	1.37	6.26	-0.68	4.01	-1.81	--	--	-0.97	9.92	1005	13636	--	--
1734.66	1.94	6.49	-2.25	--	-0.445	--	-10.5	-1.17	--	1008	7797	--	--
932.4	1.43	6.23	-1.26	3.99	--	-0.949	--	-0.986	9.82	--	--	--	--
935.85	1.43	6.23	-1.3	3.99	--	--	--	-0.988	9.82	--	--	--	--
1809.53	1.98	6.38	-0.973	--	-1.79	--	--	-1.16	--	1001	11892	--	--
871.9	1.38	6.26	--	3.99	-2.02	--	--	-1.02	9.89	1000	11875	--	--
1888.08	2.03	6.34	-1.34	--	--	--	--	-0.985	--	--	--	--	--
980.23	1.46	6.2	--	4	--	--	--	-0.843	9.84	--	--	--	--
1833.22	1.99	6.36	--	--	-1.99	--	--	-1.08	--	1001	11937	--	--
1935.35	2.05	6.31	--	--	--	--	--	-0.837	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	780.66	atmosphere	1005	14400	< th	dose independent	rect.	7	2
3	781.76	atmosphere	1005	14400	> th	dose independent	rect.	8	1
6	782.48	atmosphere	1000	14400	< th	dose dependent	rect.	2	1
8	782.82	atmosphere	1000	14400	< th	dose dependent	rect.	1	4
10	783.03	atmosphere	995	14400	> th	dose independent	rect.	12	10
11	783.07	atmosphere	995	14400	> th	dose independent	rect.	5	13
16	783.15	atmosphere	995	14400	> th	dose independent	sin	22	NA
19	783.20	atmosphere	995	14400	< th	dose independent	rect.	5	12
20	783.22	atmosphere	995	14400	< th	dose independent	sin	22	NA
24	783.25	atmosphere	995	14400	< th	dose dependent	rect.	5	14
40	783.49	atmosphere	995	14400	> th	dose independent	rect.	5	15
52	783.76	atmosphere	995	14400	< th	dose independent	rect.	15	7
53	783.76	atmosphere	995	14400	< th	dose dependent	rect.	15	7
114	784.64	atmosphere	995	14400	< th	dose dependent	sin	22	NA
239	786.40	radiation	1	14400	< th	dose dependent	rect.	20	5
267	786.68	atmosphere	995	14400	> th	dose independent	rect.	6	7
432	788.21	atmosphere	1000	14400	< th	dose dependent	sin	10	NA
513	788.68	wind	5	43200	> th	dose dependent	rect.	18	1
539	788.80	atmosphere	995	14400	> th	dose independent	no	NA	NA
541	788.80	atmosphere	995	14400	> th	dose independent	rect.	14	23
620	789.59	atmosphere	995	14400	< th	dose independent	no	NA	NA
698	790.48	wind	7	43200	< th	dose independent	rect.	18	1
976	796.18	wind	7	43200	> th	dose independent	rect.	18	1
986	796.32	atmosphere	1000	14400	> th	dose independent	rect.	1	1
987	796.33	atmosphere	1000	14400	< th	dose independent	rect.	1	1