BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0694600 Os07g0694600|AK066428
(364 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0694600 Prephenate dehydratase domain containing protein 704 0.0
Os03g0286200 Similar to Prephenate dehydratase-like 562 e-160
Os04g0406600 Prephenate dehydratase domain containing protein 409 e-114
Os09g0565700 Prephenate dehydratase domain containing protein 391 e-109
Os09g0566000 Prephenate dehydratase domain containing protein 390 e-109
Os10g0523700 Prephenate dehydratase domain containing protein 240 1e-63
Os06g0670900 108 5e-24
Os04g0652200 107 1e-23
Os02g0478525 Prephenate dehydratase domain containing protein 89 4e-18
Os01g0528300 Similar to HcrVf3 protein 84 2e-16
AK110220 77 2e-14
Os07g0512000 Prephenate dehydratase domain containing protein 70 2e-12
Os08g0429300 68 9e-12
>Os07g0694600 Prephenate dehydratase domain containing protein
Length = 364
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/364 (94%), Positives = 345/364 (94%)
Query: 1 MVSPSLRIPAAARVFDPAINTRCPPPHXXXXXXXXXXXXXXXXXXXPPGDPSIRDPISLP 60
MVSPSLRIPAAARVFDPAINTRCPPPH PPGDPSIRDPISLP
Sbjct: 1 MVSPSLRIPAAARVFDPAINTRCPPPHAVVMRMRSRSRRSIAASASPPGDPSIRDPISLP 60
Query: 61 RPLTSADLMEASGDGLKVAYQGCPGAYSEAAAKKAYPSCHTVPCEYFETAFQAVENWVAD 120
RPLTSADLMEASGDGLKVAYQGCPGAYSEAAAKKAYPSCHTVPCEYFETAFQAVENWVAD
Sbjct: 61 RPLTSADLMEASGDGLKVAYQGCPGAYSEAAAKKAYPSCHTVPCEYFETAFQAVENWVAD 120
Query: 121 RAVLPLENSLGGSIHRNYDLLLRHRLHIVGEVRLAVRHCLLANRGVKIQNLRSAMSHPQA 180
RAVLPLENSLGGSIHRNYDLLLRHRLHIVGEVRLAVRHCLLANRGVKIQNLRSAMSHPQA
Sbjct: 121 RAVLPLENSLGGSIHRNYDLLLRHRLHIVGEVRLAVRHCLLANRGVKIQNLRSAMSHPQA 180
Query: 181 LAQCEQTLTKLGIEHREAVDDTAGAAKLIAEQKLQDTGAVASSLAAQLYGLDILAENIQD 240
LAQCEQTLTKLGIEHREAVDDTAGAAKLIAEQKLQDTGAVASSLAAQLYGLDILAENIQD
Sbjct: 181 LAQCEQTLTKLGIEHREAVDDTAGAAKLIAEQKLQDTGAVASSLAAQLYGLDILAENIQD 240
Query: 241 DTDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRKINLTKMESRP 300
DTDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRKINLTKMESRP
Sbjct: 241 DTDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRKINLTKMESRP 300
Query: 301 HKKKPLRIADDNCSAPLKHFDYLFYVDLEASMADPNAQNALANLKEFATFLRVLGSYPTD 360
HKKKPLRIADDNCSAPLKHFDYLFYVDLEASMADPNAQNALANLKEFATFLRVLGSYPTD
Sbjct: 301 HKKKPLRIADDNCSAPLKHFDYLFYVDLEASMADPNAQNALANLKEFATFLRVLGSYPTD 360
Query: 361 VSEA 364
VSEA
Sbjct: 361 VSEA 364
>Os03g0286200 Similar to Prephenate dehydratase-like
Length = 399
Score = 562 bits (1448), Expect = e-160, Method: Compositional matrix adjust.
Identities = 270/314 (85%), Positives = 292/314 (92%)
Query: 51 PSIRDPISLPRPLTSADLMEASGDGLKVAYQGCPGAYSEAAAKKAYPSCHTVPCEYFETA 110
P+ RD LPRPLTSADLM SG+GLKVAYQGCPGAYSEAAAKKAYP+C TVPCE+F+TA
Sbjct: 86 PASRDLHWLPRPLTSADLMGVSGEGLKVAYQGCPGAYSEAAAKKAYPNCQTVPCEHFDTA 145
Query: 111 FQAVENWVADRAVLPLENSLGGSIHRNYDLLLRHRLHIVGEVRLAVRHCLLANRGVKIQN 170
F+AVENW+ADRAVLPLENSLGGSIHRN+DLLLRHRLHIVGEVRLAVRHCLLAN GVKI+N
Sbjct: 146 FKAVENWLADRAVLPLENSLGGSIHRNFDLLLRHRLHIVGEVRLAVRHCLLANPGVKIEN 205
Query: 171 LRSAMSHPQALAQCEQTLTKLGIEHREAVDDTAGAAKLIAEQKLQDTGAVASSLAAQLYG 230
L+SAMSHPQALAQCE TLT+ GIEHREAVDDTAGAAK +AEQ LQDTGA+ASSLAA+LYG
Sbjct: 206 LKSAMSHPQALAQCEHTLTEFGIEHREAVDDTAGAAKTVAEQNLQDTGAIASSLAAELYG 265
Query: 231 LDILAENIQDDTDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRK 290
L++LAENIQDD DNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKAL VFALR+
Sbjct: 266 LNVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALGVFALRE 325
Query: 291 INLTKMESRPHKKKPLRIADDNCSAPLKHFDYLFYVDLEASMADPNAQNALANLKEFATF 350
INLTK+ESRPHKK+PLRI DD+ S P K FDYLFY+DLEASMADP QNAL NLKEFATF
Sbjct: 326 INLTKIESRPHKKRPLRITDDSFSTPSKQFDYLFYMDLEASMADPKTQNALGNLKEFATF 385
Query: 351 LRVLGSYPTDVSEA 364
LRVLGSYPTDV+EA
Sbjct: 386 LRVLGSYPTDVNEA 399
>Os04g0406600 Prephenate dehydratase domain containing protein
Length = 436
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/309 (64%), Positives = 243/309 (78%), Gaps = 4/309 (1%)
Query: 58 SLPRPLTSADLMEA--SGDGLKVAYQGCPGAYSEAAAKKAYPSCHTVPCEYFETAFQAVE 115
+LP+PL +DL A G L+VAYQG PGAYSE AA KAYP C +PC+ FE AF AVE
Sbjct: 110 NLPQPLRISDLSPAPMHGSQLRVAYQGVPGAYSEKAAGKAYPGCDAIPCDQFEVAFSAVE 169
Query: 116 NWVADRAVLPLENSLGGSIHRNYDLLLRHRLHIVGEVRLAVRHCLLANRGVKIQNLRSAM 175
W+ADRAVLP+ENSLGGSIHRNYDLLLRHRLHIVGEV+L V HCL+A GV+ + L M
Sbjct: 170 LWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGVRKECLTRVM 229
Query: 176 SHPQALAQCEQTLTKLGIE-HREAVDDTAGAAKLIAEQKLQDTGAVASSLAAQLYGLDIL 234
SHPQALAQCE TLT +G+ REA DDTAGAA+ +A L+DT A+ASS AA+LYG+++L
Sbjct: 230 SHPQALAQCEHTLTAMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVL 289
Query: 235 AENIQDDTDNVTRFMMLAREPIIPRTDKPFKTSIVFSLE-EGPGQLFKALAVFALRKINL 293
A+ IQDD NVTRF+MLAREPI+PRTD+PFKTSIVF+ + EG LFK L+ FA R I L
Sbjct: 290 ADGIQDDCGNVTRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTSVLFKVLSAFAFRDITL 349
Query: 294 TKMESRPHKKKPLRIADDNCSAPLKHFDYLFYVDLEASMADPNAQNALANLKEFATFLRV 353
TK+ESRPH+ +P+R+ DD KHF+Y+FYVD +AS+A+P AQNALA ++E+ +FLRV
Sbjct: 350 TKIESRPHRHRPIRLVDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRV 409
Query: 354 LGSYPTDVS 362
LGSYP D++
Sbjct: 410 LGSYPMDMT 418
>Os09g0565700 Prephenate dehydratase domain containing protein
Length = 401
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/320 (64%), Positives = 246/320 (76%), Gaps = 4/320 (1%)
Query: 47 PPGDPSIRDPISLPRPLTSADLMEA--SGDGLKVAYQGCPGAYSEAAAKKAYPSCHTVPC 104
PP D + +LPRPLT DL A G L+VAYQG PGAYSEAAA KAYPSC +PC
Sbjct: 62 PPLDLDLLPVSNLPRPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAAKAYPSCDAIPC 121
Query: 105 EYFETAFQAVENWVADRAVLPLENSLGGSIHRNYDLLLRHRLHIVGEVRLAVRHCLLANR 164
+ FE AFQAVE W+ADRAVLP+ENSLGGSIHRNYDLLLRHRLHIVGEV+L V HCLLA
Sbjct: 122 DQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALP 181
Query: 165 GVKIQNLRSAMSHPQALAQCEQTLTKLGIE-HREAVDDTAGAAKLIAEQKLQDTGAVASS 223
GV+ L +SHPQALAQCE TL +G+ REA DDTA AA+ +A L+DT A+ASS
Sbjct: 182 GVRRDLLTRVISHPQALAQCELTLNAMGLNVAREAFDDTAAAAEHVAAAGLRDTAAIASS 241
Query: 224 LAAQLYGLDILAENIQDDTDNVTRFMMLAREPIIPRTDKPFKTSIVFSLE-EGPGQLFKA 282
AA+LYGL +LA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ + EG LFK
Sbjct: 242 RAAELYGLQVLADGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLFKV 301
Query: 283 LAVFALRKINLTKMESRPHKKKPLRIADDNCSAPLKHFDYLFYVDLEASMADPNAQNALA 342
L+ FA R I+LTK+ESRPH+ +P+R+ DD KHF+Y+FY+D +ASMA+ AQNAL+
Sbjct: 302 LSAFAFRDISLTKIESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQASMAEVRAQNALS 361
Query: 343 NLKEFATFLRVLGSYPTDVS 362
++EF +FLRVLGSYP D++
Sbjct: 362 EIQEFTSFLRVLGSYPMDMT 381
>Os09g0566000 Prephenate dehydratase domain containing protein
Length = 565
Score = 390 bits (1002), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/320 (64%), Positives = 246/320 (76%), Gaps = 4/320 (1%)
Query: 47 PPGDPSIRDPISLPRPLTSADLMEA--SGDGLKVAYQGCPGAYSEAAAKKAYPSCHTVPC 104
PP D + +LPRPLT DL A G L+VAYQG PGAYSEAAA KAYPSC +PC
Sbjct: 229 PPLDLDLLPVSNLPRPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAAKAYPSCDAIPC 288
Query: 105 EYFETAFQAVENWVADRAVLPLENSLGGSIHRNYDLLLRHRLHIVGEVRLAVRHCLLANR 164
+ FE AFQAVE W+ADRAVLP+ENSLGGSIHRNYDLLLRHRLHIVGEV+L V HCLLA
Sbjct: 289 DQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALP 348
Query: 165 GVKIQNLRSAMSHPQALAQCEQTLTKLGIE-HREAVDDTAGAAKLIAEQKLQDTGAVASS 223
GV+ L +SHPQALAQCE TL +G+ REA DDTA AA+ +A L+DT A+ASS
Sbjct: 349 GVRRDLLTRVISHPQALAQCELTLNAMGLNVAREAFDDTAAAAEHVAAAGLRDTAAIASS 408
Query: 224 LAAQLYGLDILAENIQDDTDNVTRFMMLAREPIIPRTDKPFKTSIVFSLE-EGPGQLFKA 282
AA+LYGL +LA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ + EG LFK
Sbjct: 409 RAAELYGLQVLADGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLFKV 468
Query: 283 LAVFALRKINLTKMESRPHKKKPLRIADDNCSAPLKHFDYLFYVDLEASMADPNAQNALA 342
L+ FA R I+LTK+ESRPH+ +P+R+ DD KHF+Y+FY+D +ASMA+ AQNAL+
Sbjct: 469 LSAFAFRDISLTKIESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQASMAEVRAQNALS 528
Query: 343 NLKEFATFLRVLGSYPTDVS 362
++EF +FLRVLGSYP D++
Sbjct: 529 EIQEFTSFLRVLGSYPMDMT 548
>Os10g0523700 Prephenate dehydratase domain containing protein
Length = 408
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 185/301 (61%), Gaps = 17/301 (5%)
Query: 76 LKVAYQGCPGAYSEAAAKKAYPSCHTVPCEYFETAFQAVENWVADRAVLPLENSLGGSIH 135
L+VA+QG PGAYSE AAK A P C TVPC F A AV+ DRA+LP+E+++ G+
Sbjct: 102 LRVAFQGAPGAYSEFAAKTALPGCDTVPCRAFADALAAVDGGAVDRAILPVESTMEGTAL 161
Query: 136 RNYDLLLRHRLHIVGEVRLAVRHCLLANRGVKIQNLRSAMSHPQALAQCEQTLTKLGIEH 195
RNYDLLLRH L +V E+ L V +CLLA GV+ +R +SHP ALA C + L +LG++
Sbjct: 162 RNYDLLLRHDLVVVQEINLFVHYCLLAMPGVRAAEVRRVISHPMALAHCGRALARLGVD- 220
Query: 196 REAVDDTAGAAKLIAEQKLQDTGAVASSLAAQLYGLDILAENIQDDTDNVTRFMMLAR-- 253
RE V+DTAGA +++ ++ DT A+AS AA LYGLD+LA +QD++ NVTRF++L++
Sbjct: 221 REPVEDTAGAVEMLRSNRMLDTAAIASPRAADLYGLDVLAHGLQDESWNVTRFLLLSKPP 280
Query: 254 EPIIPRTDKPFKTSIVFSLEEGPGQ-LFKALAVFALRKINLTKME-----------SRPH 301
P+ D KTS+V + G + K L+ F+ R INLTK+E
Sbjct: 281 SPVTLPMDADAKTSMVVAHRGGSMMVVLKVLSAFSSRNINLTKLEVINNNDGGGGGGGAA 340
Query: 302 KKKPLRIADDNC-SAP-LKHFDYLFYVDLEASMADPNAQNALANLKEFATFLRVLGSYPT 359
P+ I D + AP L+ F ++ YVD E + DP +A+ ++ FA F+RVLG Y
Sbjct: 341 AGHPVMILDTSARGAPTLRAFPHVLYVDCEGASHDPRVLDAIKEIERFAVFVRVLGCYAA 400
Query: 360 D 360
D
Sbjct: 401 D 401
>Os06g0670900
Length = 311
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 185 EQTLTKLGIE-HREAVDDTAGAAKLIAEQKLQDTGAVASSLAAQLYGLDILAENIQDDTD 243
E TL +G+ REA DDTA AA+ + L+DT A+ASS AA LYGL +LA+ IQDD
Sbjct: 191 ELTLNAMGLNVAREAFDDTAAAAEHVVAAGLRDTAAIASSRAADLYGLQVLADGIQDDAG 250
Query: 244 NVTRFMMLAREPIIPRTDKPFKTSIVFSLE-EGPGQLFKALAV 285
NVTRF+MLAREPIIPRTD+PFKTSIVF+ + EG LF A+ +
Sbjct: 251 NVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLFGAVGL 293
>Os04g0652200
Length = 264
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 73/98 (74%), Gaps = 2/98 (2%)
Query: 185 EQTLTKLGIE-HREAVDDTAGAAKLIAEQKLQDTGAVASSLAAQLYGLDILAENIQDDTD 243
E TL +G+ REA DDTA AA+ + L+DT A+ASS AA LYGL +LA+ IQDD
Sbjct: 166 ELTLNAMGLNVAREAFDDTAAAAEHVVAAGLRDTAAIASSRAADLYGLQVLADGIQDDAG 225
Query: 244 NVTRFMMLAREPIIPRTDKPFKTSIVFSLE-EGPGQLF 280
NVTRF+MLAREPIIPRTD+PFKTSIVF+ + EG LF
Sbjct: 226 NVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLF 263
>Os02g0478525 Prephenate dehydratase domain containing protein
Length = 192
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 44/165 (26%)
Query: 176 SHPQALAQCEQTLTKLGIEHREAVDDTAGAAKLI-----------------------AEQ 212
SHPQ LAQCE TL + + AV ++ A + A
Sbjct: 44 SHPQVLAQCELTLNAMVLN--SAVKSSSAARTCVKFCTKPIVVSATKSHPSMTPWHVAAA 101
Query: 213 KLQDTGAVASSLAAQLYGLDILAENIQDDTDNVTRFMMLAREPIIPRTDKPFKTSIVFSL 272
+L++T +ASS A LYGL +LA+ IQDD +VTRF + + ++
Sbjct: 102 ELRETATIASSCAIDLYGLQVLADGIQDDAGDVTRF--------VTKIER---------- 143
Query: 273 EEGPGQLFKALAVFALRKINLTKMESRPHKKKPLRIADDNCSAPL 317
EG +FK L FA R I+LTK+ES PH+ +P+R+ DD P
Sbjct: 144 -EGTSVMFKVLPAFAFRDISLTKIESWPHRHRPIRLIDDTNVGPF 187
>Os01g0528300 Similar to HcrVf3 protein
Length = 263
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Query: 262 KPFKTSIVFSLE-EGPGQLFKALAVFALRKINLTKMESRPHK-KKPLRIADDNCSAPLKH 319
+PFKTSIVF+ + EG LFK L+ FA R I+LTK+ESRPH+ + P++ D KH
Sbjct: 38 RPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKIESRPHRHRHPIQFVDGANVGTAKH 97
Query: 320 FDYLFYVDLEASMADPNA 337
F+Y+FY+D +ASMA+ A
Sbjct: 98 FEYMFYIDFQASMAEVRA 115
>AK110220
Length = 1018
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 104/249 (41%), Gaps = 57/249 (22%)
Query: 65 SADLMEASGDGLKVAYQGCPGAYSEAAAKKAYPSCHT--VPCEYFETAFQAVENWV---A 119
SA AS VAY G G YS AA K + T +P + A V A
Sbjct: 469 SAGQRSASISAGAVAYLGPTGTYSHQAALKVFGETGTNLIPMQSITGAIDFVRRGTPGNA 528
Query: 120 DRAVLPLENSLGGSIHRNYDLLL------RH--------RLHIVGEVRLAVRHCLL---- 161
A++P+ENS G + D LL RH LH+VGE LAV H LL
Sbjct: 529 KIAIVPVENSTFGPVRDTLDNLLNISNGDRHAMRPSEGAHLHVVGEACLAVDHALLCGPR 588
Query: 162 -------------AN---RGVKIQNLRSAMSHPQALAQCEQTLTK-LGIEHREAVDDTAG 204
AN R + N+ + +SH QAL QC + LT+ L ++AVD TA
Sbjct: 589 TYQRLLALQDDSDANAPIRDDTLSNITNVISHEQALGQCARYLTRYLPQARKKAVDSTAA 648
Query: 205 AAKLIAEQKLQDTGAVASS-----------------LAAQLYGLDILAENIQDDTDNVTR 247
AA E + +AS A + G+ +L IQD DN TR
Sbjct: 649 AAITALEFEAGTAPGMASGESLGFSSNSLVVAVGAEAAVKTVGVRVLRSKIQDVQDNRTR 708
Query: 248 FMMLAREPI 256
F++LA EP+
Sbjct: 709 FLVLASEPL 717
>Os07g0512000 Prephenate dehydratase domain containing protein
Length = 137
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 264 FKTSIVFSLEEGPGQLFKALAVFALRKINLTKMESRPHKKKPLRI-ADDNCSAPLKHFDY 322
++TSIVF LEEGPG LFKAL+ F +R INL+K+ESRP+K++P+R ++ + L HF +
Sbjct: 50 YQTSIVFGLEEGPGILFKALSAFWMRDINLSKIESRPNKREPMRTQGNEKYATLLLHFQH 109
>Os08g0429300
Length = 170
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 42/59 (71%)
Query: 84 PGAYSEAAAKKAYPSCHTVPCEYFETAFQAVENWVADRAVLPLENSLGGSIHRNYDLLL 142
PGAYSEAAA KAYPSC +PC+ FE AFQAVE W+AD AVL ++NS +H N L
Sbjct: 112 PGAYSEAAAAKAYPSCDAIPCDQFEVAFQAVELWIADHAVLLVKNSSHAHMHYNQTYWL 170
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,945,050
Number of extensions: 488105
Number of successful extensions: 1172
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1152
Number of HSP's successfully gapped: 13
Length of query: 364
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 262
Effective length of database: 11,709,973
Effective search space: 3068012926
Effective search space used: 3068012926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)