Os01g0528300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HcrVf3 protein.
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Os01g0528300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HcrVf3 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 314.16 | 0.833 | 3.27 | -1.21 | 0.468 | 0.913 | -1.56 | 0.482 | -0.18 | 11.8 | 19.9 | 717 | -- | -- |
| 314.4 | 0.826 | 3.27 | -1.14 | 0.478 | 0.865 | -1.46 | -- | -0.166 | 11.8 | 19.75 | 712 | -- | -- |
| 323.85 | 0.838 | 3.27 | -1.23 | 0.49 | 1 | -- | 0.417 | -0.166 | 11.5 | 19.7 | 841 | -- | -- |
| 322.61 | 0.837 | 3.27 | -1.17 | 0.464 | 0.988 | -- | -- | -0.185 | 11.8 | 19.3 | 790 | -- | -- |
| 335.33 | 0.853 | 3.28 | -1.15 | -- | 1.23 | -- | 0.355 | -0.151 | -- | 19.4 | 807 | -- | -- |
| 332.22 | 0.854 | 3.3 | -1.45 | 0.578 | -- | -1.48 | -- | -0.327 | 11.6 | -- | -- | -- | -- |
| 341.7 | 0.866 | 3.3 | -1.51 | 0.585 | -- | -- | -- | -0.333 | 11.6 | -- | -- | -- | -- |
| 335.59 | 0.853 | 3.27 | -1.1 | -- | 1.15 | -- | -- | -0.138 | -- | 19.42 | 817 | -- | -- |
| 328.08 | 0.844 | 3.2 | -- | 0.571 | 1.45 | -- | -- | 0.112 | 11.5 | 16.53 | 47520 | -- | -- |
| 363.21 | 0.891 | 3.31 | -1.53 | -- | -- | -- | -- | -0.34 | -- | -- | -- | -- | -- |
| 401.88 | 0.938 | 3.26 | -- | 0.603 | -- | -- | -- | -0.165 | 11.7 | -- | -- | -- | -- |
| 348.52 | 0.869 | 3.21 | -- | -- | 1.48 | -- | -- | 0.111 | -- | 16.57 | 47520 | -- | -- |
| 424.73 | 0.962 | 3.28 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 300.73 | humidity | 90 | 90 | < th | dose dependent | rect. | 5 | 1 |
| 4 | 301.25 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 5 | 302.18 | humidity | 90 | 720 | < th | dose dependent | rect. | 4 | 2 |
| 8 | 302.78 | humidity | 80 | 720 | < th | dose independent | rect. | 5 | 1 |
| 18 | 303.31 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 37 | 303.85 | wind | 3 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 44 | 304.27 | wind | 3 | 10 | > th | dose dependent | rect. | 2 | 5 |
| 54 | 304.88 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 57 | 305.39 | wind | 3 | 10 | > th | dose independent | rect. | 5 | 2 |
| 60 | 305.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 61 | 305.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 63 | 305.80 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 10 |
| 87 | 307.01 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 9 |
| 89 | 307.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 91 | 307.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 101 | 307.12 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 125 | 307.44 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 131 | 307.56 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 6 |
| 146 | 307.98 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 152 | 308.05 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 204 | 308.78 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 232 | 309.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 2 |
| 249 | 309.43 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 2 |
| 253 | 309.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 270 | 309.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 274 | 309.82 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 308 | 310.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 316 | 310.25 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 19 |
| 322 | 310.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 8 |
| 338 | 310.48 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 375 | 310.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 414 | 310.99 | humidity | 80 | 1440 | < th | dose dependent | rect. | 22 | 9 |
| 438 | 311.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 479 | 311.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 504 | 311.71 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 566 | 312.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 622 | 312.43 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 665 | 312.73 | radiation | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 743 | 313.10 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 762 | 313.21 | temperature | 25 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 826 | 313.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 929 | 313.93 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |