Os09g0565700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prephenate dehydratase domain containing protein.
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Os09g0565700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prephenate dehydratase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.21 | 0.439 | 8.41 | 1.31 | 2.25 | 0.893 | -0.369 | -2.52 | 0.338 | 14 | 28.18 | 747 | -- | -- |
| 96.72 | 0.458 | 8.44 | 1.01 | 2.3 | 0.833 | -0.799 | -- | 0.281 | 13.7 | 86.96 | 8667 | -- | -- |
| 87.58 | 0.436 | 8.41 | 1.33 | 2.24 | 0.898 | -- | -2.53 | 0.34 | 14 | 27.57 | 782 | -- | -- |
| 96.29 | 0.457 | 8.44 | 1.02 | 2.33 | 0.984 | -- | -- | 0.29 | 13.7 | 24.52 | 8361 | -- | -- |
| 361.46 | 0.885 | 8.37 | 1.55 | -- | 2.07 | -- | -2.36 | 0.51 | -- | 28.32 | 979 | -- | -- |
| 107.8 | 0.487 | 8.51 | 0.555 | 2.32 | -- | -0.732 | -- | 0.0111 | 13.7 | -- | -- | -- | -- |
| 109.92 | 0.491 | 8.51 | 0.532 | 2.32 | -- | -- | -- | 0.00712 | 13.7 | -- | -- | -- | -- |
| 368.8 | 0.894 | 8.36 | 1.24 | -- | 2.24 | -- | -- | 0.521 | -- | 28.21 | 994 | -- | -- |
| 113.29 | 0.498 | 8.51 | -- | 2.4 | 0.505 | -- | -- | 0.0252 | 13.7 | 24.52 | 8361 | -- | -- |
| 438.85 | 0.979 | 8.54 | 0.438 | -- | -- | -- | -- | -0.0447 | -- | -- | -- | -- | -- |
| 117.38 | 0.507 | 8.52 | -- | 2.31 | -- | -- | -- | -0.0521 | 13.7 | -- | -- | -- | -- |
| 382.82 | 0.914 | 8.62 | -- | -- | -1.67 | -- | -- | -0.385 | -- | 28.59 | 2450 | -- | -- |
| 443.9 | 0.983 | 8.55 | -- | -- | -- | -- | -- | -0.0932 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 7 | 79.39 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 10 |
| 18 | 81.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 20 | 81.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 19 |
| 24 | 82.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 27 | 82.28 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 35 | 82.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 18 |
| 49 | 82.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 10 |
| 56 | 83.07 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 78 | 83.47 | radiation | 1 | 270 | < th | dose dependent | rect. | 20 | 18 |
| 203 | 84.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 6 |
| 242 | 85.31 | radiation | 1 | 270 | < th | dose independent | rect. | 20 | 18 |
| 295 | 85.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 381 | 86.28 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 382 | 86.28 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 429 | 86.57 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 456 | 86.69 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 469 | 86.73 | temperature | 20 | 90 | > th | dose dependent | sin | 7 | NA |
| 471 | 86.75 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 477 | 86.76 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 491 | 86.83 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 494 | 86.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 495 | 86.84 | temperature | 15 | 270 | > th | dose independent | rect. | 6 | 14 |
| 503 | 86.88 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 504 | 86.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 506 | 86.89 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 513 | 86.90 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 528 | 86.95 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 539 | 86.98 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 553 | 87.03 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 563 | 87.06 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 575 | 87.09 | humidity | 70 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 588 | 87.12 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 615 | 87.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 628 | 87.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 637 | 87.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 642 | 87.26 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 675 | 87.32 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 752 | 87.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 768 | 87.48 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 820 | 87.56 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 18 |
| 870 | 87.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 22 |
| 887 | 87.65 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 948 | 87.73 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 968 | 87.75 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 981 | 87.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 6 |
| 985 | 87.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 11 |
| 997 | 87.77 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 999 | 87.77 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |