FiT-DB / Search/ Help/ Sample detail

Os07g0694600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Prephenate dehydratase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.21 (0.0347) R2 : 0.679
β1 : -2.36 (0.129) R2dD : 0.261 R2D : 0.119
β2 : 1.51 (0.086) R2dC : 0.238 R2C : 0.331
β3 : 2.45 (0.171) R2dE : 0.179 R2E : 0.139
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.756 (0.0766) R2dN8 : 0.101 R2N8 : -0.0373
σ : 0.637
deviance : 187.35
__
_____
C
peak time of C : 10.3
E
wheather : temperature
threshold : 15.34
memory length : 27
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.91 0.632 8.25 -2.72 1.52 2.08 1.36 -2.25 -0.845 10.4 19.63 31 -- --
184.12 0.632 8.22 -2.36 1.52 2.19 1.1 -- -0.748 10.3 17.29 27 -- --
186.94 0.637 8.24 -2.51 1.5 2.12 -- -1.22 -0.806 10.2 19.6 30 -- --
187.35 0.637 8.21 -2.36 1.51 2.45 -- -- -0.756 10.3 15.34 27 -- --
304.09 0.817 8.29 -2.64 -- 3.13 -- -0.733 -0.917 -- 17.1 12 -- --
242.51 0.73 8.13 -1.91 1.94 -- 1.2 -- -0.4 11.6 -- -- -- --
248.71 0.739 8.13 -1.86 1.93 -- -- -- -0.396 11.6 -- -- -- --
304.53 0.813 8.28 -2.52 -- 3.11 -- -- -0.884 -- 17.2 8 -- --
316.3 0.833 8.12 -- 1.65 1.21 -- -- -0.366 10.9 20.17 33 -- --
483.79 1.03 8.18 -1.91 -- -- -- -- -0.418 -- -- -- -- --
339.99 0.863 8.08 -- 1.96 -- -- -- -0.188 11.6 -- -- -- --
458.89 0.998 8.2 -- -- 2.25 -- -- -0.522 -- 19.74 3 -- --
580.47 1.12 8.13 -- -- -- -- -- -0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.60 temperature 20 10 > th dose dependent rect. 20 23
6 176.42 temperature 20 30 > th dose dependent rect. 5 13
9 176.65 temperature 20 30 > th dose dependent rect. 23 19
14 177.44 wind 9 43200 > th dose dependent rect. 18 3
25 179.85 temperature 20 30 > th dose dependent rect. 4 23
30 180.25 temperature 20 30 > th dose dependent rect. 1 17
40 180.95 temperature 20 30 > th dose dependent no NA NA
42 181.07 wind 9 43200 > th dose independent rect. 18 3
51 182.24 temperature 30 10 < th dose dependent rect. 9 23
53 182.30 temperature 20 10 > th dose dependent rect. 15 23
61 182.56 wind 9 43200 < th dose independent rect. 18 3
68 183.01 temperature 30 30 < th dose dependent rect. 11 23
73 183.24 temperature 30 30 < th dose dependent rect. 17 23
76 183.29 temperature 30 10 < th dose dependent no NA NA
82 183.71 temperature 30 10 < th dose dependent rect. 1 23
83 183.72 temperature 20 10 > th dose dependent rect. 23 23
84 183.75 temperature 20 10 > th dose dependent rect. 2 23
87 183.83 temperature 30 30 < th dose dependent rect. 13 23
89 183.95 temperature 20 720 > th dose dependent rect. 21 13
92 183.97 temperature 30 30 < th dose dependent rect. 7 23
99 184.16 temperature 30 30 < th dose dependent rect. 15 23
120 184.94 temperature 30 90 < th dose dependent rect. 23 23
126 185.05 temperature 30 10 < th dose dependent rect. 19 23
127 185.18 temperature 30 10 < th dose dependent rect. 3 23
128 185.19 temperature 30 30 < th dose dependent sin 0 NA
131 185.32 temperature 20 720 > th dose dependent sin 8 NA
154 185.91 humidity 90 14400 > th dose dependent rect. 22 6
155 186.01 humidity 90 14400 > th dose dependent rect. 23 4
158 186.07 temperature 30 10 < th dose dependent rect. 23 23
159 186.09 temperature 10 30 > th dose dependent sin 1 NA
161 186.16 humidity 90 14400 > th dose dependent rect. 21 8
184 186.73 wind 9 43200 < th dose independent rect. 18 1
188 186.79 temperature 25 90 > th dose independent rect. 6 12
189 186.80 temperature 30 30 < th dose dependent rect. 9 21
197 186.91 temperature 25 90 > th dose independent rect. 1 17
207 187.09 temperature 30 30 < th dose dependent rect. 21 23
217 187.24 wind 9 43200 > th dose dependent rect. 18 7
225 187.40 humidity 90 43200 > th dose dependent rect. 3 9
245 187.64 temperature 25 90 > th dose independent rect. 4 14
248 187.65 humidity 90 43200 > th dose dependent rect. 5 1
252 187.69 humidity 90 43200 > th dose dependent rect. 4 6
253 187.70 humidity 90 43200 > th dose independent rect. 22 1
288 188.04 humidity 90 43200 < th dose independent rect. 22 1
292 188.07 temperature 30 720 < th dose dependent sin 6 NA
293 188.07 temperature 20 720 > th dose dependent rect. 4 4
300 188.16 radiation 1 43200 < th dose independent rect. 18 7
306 188.19 radiation 1 43200 < th dose independent rect. 18 4
325 188.40 temperature 30 720 < th dose dependent rect. 23 15
345 188.60 humidity 90 43200 > th dose dependent sin 4 NA
377 188.94 radiation 1 43200 < th dose dependent rect. 18 11
386 189.05 humidity 90 43200 > th dose independent rect. 3 9
396 189.14 wind 9 43200 > th dose independent rect. 18 1
437 189.47 humidity 90 43200 > th dose independent rect. 5 2
443 189.54 humidity 70 43200 < th dose independent rect. 19 1
463 189.70 radiation 10 43200 < th dose independent rect. 13 1
476 189.82 radiation 1 43200 < th dose dependent rect. 18 7
483 189.85 radiation 1 43200 < th dose dependent rect. 18 4
514 190.08 temperature 15 720 > th dose dependent rect. 2 6
523 190.13 temperature 20 10 > th dose dependent rect. 13 23
553 190.27 wind 3 43200 > th dose dependent rect. 14 1
554 190.27 temperature 30 720 < th dose dependent rect. 1 9
567 190.35 humidity 70 43200 > th dose independent rect. 19 1
577 190.41 radiation 10 43200 < th dose independent rect. 10 1
584 190.46 radiation 1 43200 > th dose independent rect. 18 1
594 190.46 radiation 1 4320 < th dose dependent rect. 1 4
601 190.51 radiation 10 43200 < th dose independent rect. 10 4
618 190.61 humidity 90 43200 > th dose dependent rect. 19 18
620 190.63 humidity 90 43200 > th dose independent sin 4 NA
637 190.71 temperature 25 90 > th dose independent rect. 20 22
651 190.79 radiation 10 43200 > th dose independent rect. 7 1
661 190.84 humidity 70 43200 < th dose dependent rect. 19 1
668 190.88 radiation 10 43200 < th dose independent rect. 8 7
682 190.94 radiation 1 4320 < th dose dependent rect. 3 2
698 190.99 humidity 80 43200 > th dose dependent rect. 13 1
709 191.04 wind 5 43200 > th dose independent rect. 14 7
724 191.11 radiation 1 43200 < th dose independent rect. 7 1
725 191.11 wind 5 43200 < th dose independent rect. 14 7
735 191.12 humidity 90 43200 > th dose dependent rect. 3 23
758 191.19 wind 5 43200 > th dose independent rect. 14 1
764 191.20 temperature 20 270 > th dose dependent sin 5 NA
766 191.21 wind 5 43200 < th dose independent rect. 14 2
829 191.45 radiation 1 43200 < th dose dependent rect. 18 15
851 191.53 humidity 80 43200 > th dose independent rect. 10 1
866 191.57 humidity 90 43200 > th dose dependent no NA NA
871 191.62 humidity 80 43200 > th dose independent rect. 9 5
878 191.65 radiation 1 43200 < th dose dependent rect. 4 1
881 191.66 humidity 90 43200 > th dose independent rect. 22 15
882 191.66 humidity 90 43200 > th dose independent rect. 20 17
891 191.70 radiation 10 43200 > th dose independent rect. 5 3
920 191.76 humidity 90 43200 < th dose independent rect. 4 7
954 191.87 temperature 25 270 < th dose independent rect. 7 10
967 191.92 humidity 90 43200 > th dose dependent rect. 11 23
971 191.94 humidity 90 43200 > th dose dependent rect. 7 23
982 191.97 wind 9 43200 < th dose dependent rect. 14 1
991 192.01 humidity 90 43200 < th dose independent rect. 19 4
995 192.03 radiation 40 43200 > th dose independent rect. 9 1