Os09g0566000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prephenate dehydratase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0566000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Prephenate dehydratase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.72 | 0.584 | 8.63 | 1.28 | 3.95 | -3.2 | -0.103 | 1.29 | 0.142 | 5.92 | 14.82 | 277 | 17.9 | 16.1 |
| 153.65 | 0.577 | 8.67 | 1.12 | 4.03 | -3.19 | 0.439 | -- | 0.0998 | 5.73 | 14.11 | 288 | 17.7 | 16.2 |
| 153.96 | 0.578 | 8.63 | 1.35 | 3.94 | -3.19 | -- | 1.55 | 0.114 | 5.92 | 14.9 | 284 | 17.8 | 16.2 |
| 151.26 | 0.573 | 8.66 | 1.16 | 4.06 | -3.28 | -- | -- | 0.1 | 5.77 | 13.41 | 310 | 17.5 | 16.4 |
| 424.76 | 0.965 | 8.79 | 1.09 | -- | -2.18 | -- | 1.41 | -0.182 | -- | 18.96 | 1915 | 11.2 | 14.5 |
| 313.78 | 0.83 | 8.77 | 0.6 | 2.32 | -- | 0.672 | -- | -0.338 | 7 | -- | -- | -- | -- |
| 314.93 | 0.831 | 8.77 | 0.612 | 2.33 | -- | -- | -- | -0.34 | 6.97 | -- | -- | -- | -- |
| 280.52 | 0.78 | 8.79 | 0.873 | -- | -3 | -- | -- | -0.197 | -- | 3.222 | 374 | 8.36 | 14.7 |
| 180.8 | 0.626 | 8.67 | -- | 4.02 | -3.22 | -- | -- | -0.0383 | 5.79 | 12.28 | 320 | 17.2 | 16.8 |
| 599.56 | 1.14 | 8.82 | 0.66 | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
| 324.8 | 0.843 | 8.79 | -- | 2.33 | -- | -- | -- | -0.408 | 6.96 | -- | -- | -- | -- |
| 295.36 | 0.8 | 8.81 | -- | -- | -2.79 | -- | -- | -0.245 | -- | 5.854 | 380 | 8.15 | 14.8 |
| 611.04 | 1.15 | 8.84 | -- | -- | -- | -- | -- | -0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 6 | 161.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 36 | 176.23 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 67 | 185.61 | temperature | 15 | 10 | > th | dose dependent | sin | 6 | NA |
| 72 | 186.33 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 19 |
| 103 | 189.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 108 | 189.74 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 17 |
| 120 | 190.79 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 178 | 195.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 18 |
| 181 | 196.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 198 | 196.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 8 |
| 206 | 197.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 272 | 202.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 292 | 204.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 296 | 204.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 318 | 205.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 329 | 205.60 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 8 |
| 360 | 207.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 361 | 207.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 376 | 207.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 377 | 207.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 412 | 209.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 7 |
| 432 | 210.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 498 | 212.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 501 | 212.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 21 |
| 512 | 212.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 19 |
| 531 | 213.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 542 | 213.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 23 |
| 553 | 213.88 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 568 | 214.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 593 | 214.87 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 7 |
| 641 | 215.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 644 | 215.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 715 | 217.79 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 18 |
| 722 | 217.95 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 731 | 218.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 770 | 219.07 | radiation | 1 | 270 | < th | dose dependent | sin | 9 | NA |
| 885 | 221.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 910 | 222.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 963 | 223.35 | radiation | 1 | 270 | < th | dose independent | sin | 9 | NA |