BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0566000 Os09g0566000|Os09g0566000
(565 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0566000 Prephenate dehydratase domain containing protein 853 0.0
Os09g0565700 Prephenate dehydratase domain containing protein 625 e-179
Os04g0406600 Prephenate dehydratase domain containing protein 541 e-154
Os07g0694600 Prephenate dehydratase domain containing protein 372 e-103
Os03g0286200 Similar to Prephenate dehydratase-like 371 e-103
Os10g0523700 Prephenate dehydratase domain containing protein 229 6e-60
Os02g0478525 Prephenate dehydratase domain containing protein 156 3e-38
Os04g0652200 152 9e-37
Os06g0670900 150 2e-36
Os01g0528300 Similar to HcrVf3 protein 150 2e-36
Os08g0411000 85 1e-16
Os08g0429300 83 5e-16
>Os09g0566000 Prephenate dehydratase domain containing protein
Length = 565
Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/565 (78%), Positives = 443/565 (78%)
Query: 1 MGGGAAAGNSRGISHRGLRGESNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MGGGAAAGNSRGISHRGLRGESND
Sbjct: 1 MGGGAAAGNSRGISHRGLRGESNDGGGQRRRCRQGREARRHRRPPLPICCRRPEEKRIEE 60
Query: 61 XXXAPPTPATSSPFLSRRIGSKRWPPGKQLGMAGHLLPFARGHVHLRELEDLEQRHEPLA 120
APPTPATSSPFLSRRIGSKRWPPGKQLGMAGHLLPFARGHVHLRELEDLEQRHEPLA
Sbjct: 61 RKEAPPTPATSSPFLSRRIGSKRWPPGKQLGMAGHLLPFARGHVHLRELEDLEQRHEPLA 120
Query: 121 PEPVADTXXXXXXXXXXXXXXXXAALSRHPPLAVAVRRMMETLPAPRPTQIPRSTAIRPP 180
PEPVADT AALSRHPPLAVAVRRMMETLPAPRPTQIPRSTAIRPP
Sbjct: 121 PEPVADTVGVVLVGEEELQGGREAALSRHPPLAVAVRRMMETLPAPRPTQIPRSTAIRPP 180
Query: 181 CATPFSRAHWQXXXXXXXXXXXXXXXXXXXXPRVNGDSIKXXXXXXXXXXXXXXXXXXXX 240
CATPFSRAHWQ PRVNGDSIK
Sbjct: 181 CATPFSRAHWQTTCAAILATTTTTNAKAYGAPRVNGDSIKPALSDHAAPPLDLDLLPVSN 240
Query: 241 XXRPLTITDLSPAPMHGSQLRVAYQGVPGAYSEXXXXXXYPSCDAIPCDQFEVAFQAVEL 300
RPLTITDLSPAPMHGSQLRVAYQGVPGAYSE YPSCDAIPCDQFEVAFQAVEL
Sbjct: 241 LPRPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAAKAYPSCDAIPCDQFEVAFQAVEL 300
Query: 301 WIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRRDLLTRVIS 360
WIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRRDLLTRVIS
Sbjct: 301 WIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRRDLLTRVIS 360
Query: 361 HPQALAQCELTLNAMGLNXXXXXXXXXXXXXXXXXXXGLRDTAAIASSRAAELYGLQVLA 420
HPQALAQCELTLNAMGLN GLRDTAAIASSRAAELYGLQVLA
Sbjct: 361 HPQALAQCELTLNAMGLNVAREAFDDTAAAAEHVAAAGLRDTAAIASSRAAELYGLQVLA 420
Query: 421 DGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLT 480
DGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLT
Sbjct: 421 DGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLT 480
Query: 481 KIESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQASMAEVRAQNALSEIQEFTSFLRVL 540
KIESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQASMAEVRAQNALSEIQEFTSFLRVL
Sbjct: 481 KIESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQASMAEVRAQNALSEIQEFTSFLRVL 540
Query: 541 GSYPMDMTPWEYSSSGQTAGDTSSS 565
GSYPMDMTPWEYSSSGQTAGDTSSS
Sbjct: 541 GSYPMDMTPWEYSSSGQTAGDTSSS 565
>Os09g0565700 Prephenate dehydratase domain containing protein
Length = 401
Score = 625 bits (1611), Expect = e-179, Method: Compositional matrix adjust.
Identities = 327/411 (79%), Positives = 328/411 (79%), Gaps = 18/411 (4%)
Query: 160 METLPAPRPTQIPRSTAIRPPCATPFSRAHWQXXXXXXXXXXXXXXXXXXXXPRVNGDS- 218
MET PA RP IPRSTA+RPPCATPFSRAHW PRVNGDS
Sbjct: 1 METSPALRPAHIPRSTAVRPPCATPFSRAHWHATCAAIRRV-----------PRVNGDSN 49
Query: 219 --IKXXXXXXXXXXXXXXXXXXXXXXRPLTITDLSPAPMHGSQLRVAYQGVPGAYSEXXX 276
IK RPLTITDLSPAPMHGSQLRVAYQGVPGAYSE
Sbjct: 50 SSIKPALADHAAPPLDLDLLPVSNLPRPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAA 109
Query: 277 XXXYPSCDAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEV 336
YPSCDAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEV
Sbjct: 110 AKAYPSCDAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEV 169
Query: 337 QLPVHHCLLALPGVRRDLLTRVISHPQALAQCELTLNAMGLNXXXXXXXXXXXXXXXXXX 396
QLPVHHCLLALPGVRRDLLTRVISHPQALAQCELTLNAMGLN
Sbjct: 170 QLPVHHCLLALPGVRRDLLTRVISHPQALAQCELTLNAMGLNVAREAFDDTAAAAEHVAA 229
Query: 397 XGLRDTAAIASSRAAELYGLQVLADGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFA 456
GLRDTAAIASSRAAELYGLQVLADGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFA
Sbjct: 230 AGLRDTAAIASSRAAELYGLQVLADGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFA 289
Query: 457 HDREGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQA 516
HDREGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQA
Sbjct: 290 HDREGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQA 349
Query: 517 SMAEVRAQNALSEIQEFTSFLRVLGSYPMDMTPWEYSSSGQT----AGDTS 563
SMAEVRAQNALSEIQEFTSFLRVLGSYPMDMTPWEYSSS GDTS
Sbjct: 350 SMAEVRAQNALSEIQEFTSFLRVLGSYPMDMTPWEYSSSSSPSPAPGGDTS 400
>Os04g0406600 Prephenate dehydratase domain containing protein
Length = 436
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 258/307 (84%), Positives = 274/307 (89%)
Query: 243 RPLTITDLSPAPMHGSQLRVAYQGVPGAYSEXXXXXXYPSCDAIPCDQFEVAFQAVELWI 302
+PL I+DLSPAPMHGSQLRVAYQGVPGAYSE YP CDAIPCDQFEVAF AVELWI
Sbjct: 113 QPLRISDLSPAPMHGSQLRVAYQGVPGAYSEKAAGKAYPGCDAIPCDQFEVAFSAVELWI 172
Query: 303 ADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRRDLLTRVISHP 362
ADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCL+ALPGVR++ LTRV+SHP
Sbjct: 173 ADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGVRKECLTRVMSHP 232
Query: 363 QALAQCELTLNAMGLNXXXXXXXXXXXXXXXXXXXGLRDTAAIASSRAAELYGLQVLADG 422
QALAQCE TL AMGLN GLRDTAAIASSRAAELYG++VLADG
Sbjct: 233 QALAQCEHTLTAMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLADG 292
Query: 423 IQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKI 482
IQDD GNVTRFVMLAREPI+PRTDRPFKTSIVFAHD+EGTSVLFKVLSAFAFRDI+LTKI
Sbjct: 293 IQDDCGNVTRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTSVLFKVLSAFAFRDITLTKI 352
Query: 483 ESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQASMAEVRAQNALSEIQEFTSFLRVLGS 542
ESRPHRHRPIRLVDDANVGTAKHFEYMFY+DFQAS+AE RAQNAL+E+QE+TSFLRVLGS
Sbjct: 353 ESRPHRHRPIRLVDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVLGS 412
Query: 543 YPMDMTP 549
YPMDMTP
Sbjct: 413 YPMDMTP 419
>Os07g0694600 Prephenate dehydratase domain containing protein
Length = 364
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/306 (60%), Positives = 222/306 (72%), Gaps = 4/306 (1%)
Query: 243 RPLTITDLSPAPMHGSQLRVAYQGVPGAYSEXXXXXXYPSCDAIPCDQFEVAFQAVELWI 302
RPLT DL A G L+VAYQG PGAYSE YPSC +PC+ FE AFQAVE W+
Sbjct: 61 RPLTSADLMEA--SGDGLKVAYQGCPGAYSEAAAKKAYPSCHTVPCEYFETAFQAVENWV 118
Query: 303 ADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRRDLLTRVISHP 362
ADRAVLP+ENSLGGSIHRNYDLLLRHRLHIVGEV+L V HCLLA GV+ L +SHP
Sbjct: 119 ADRAVLPLENSLGGSIHRNYDLLLRHRLHIVGEVRLAVRHCLLANRGVKIQNLRSAMSHP 178
Query: 363 QALAQCELTLNAMGLNXXXXXXXXXXXXXXXXXXXGLRDTAAIASSRAAELYGLQVLADG 422
QALAQCE TL +G+ L+DT A+ASS AA+LYGL +LA+
Sbjct: 179 QALAQCEQTLTKLGIEHREAVDDTAGAAKLIAEQK-LQDTGAVASSLAAQLYGLDILAEN 237
Query: 423 IQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKI 482
IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ + EG LFK L+ FA R I+LTK+
Sbjct: 238 IQDDTDNVTRFMMLAREPIIPRTDKPFKTSIVFSLE-EGPGQLFKALAVFALRKINLTKM 296
Query: 483 ESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQASMAEVRAQNALSEIQEFTSFLRVLGS 542
ESRPH+ +P+R+ DD KHF+Y+FY+D +ASMA+ AQNAL+ ++EF +FLRVLGS
Sbjct: 297 ESRPHKKKPLRIADDNCSAPLKHFDYLFYVDLEASMADPNAQNALANLKEFATFLRVLGS 356
Query: 543 YPMDMT 548
YP D++
Sbjct: 357 YPTDVS 362
>Os03g0286200 Similar to Prephenate dehydratase-like
Length = 399
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/306 (60%), Positives = 222/306 (72%), Gaps = 4/306 (1%)
Query: 243 RPLTITDLSPAPMHGSQLRVAYQGVPGAYSEXXXXXXYPSCDAIPCDQFEVAFQAVELWI 302
RPLT DL + G L+VAYQG PGAYSE YP+C +PC+ F+ AF+AVE W+
Sbjct: 96 RPLTSADL--MGVSGEGLKVAYQGCPGAYSEAAAKKAYPNCQTVPCEHFDTAFKAVENWL 153
Query: 303 ADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRRDLLTRVISHP 362
ADRAVLP+ENSLGGSIHRN+DLLLRHRLHIVGEV+L V HCLLA PGV+ + L +SHP
Sbjct: 154 ADRAVLPLENSLGGSIHRNFDLLLRHRLHIVGEVRLAVRHCLLANPGVKIENLKSAMSHP 213
Query: 363 QALAQCELTLNAMGLNXXXXXXXXXXXXXXXXXXXGLRDTAAIASSRAAELYGLQVLADG 422
QALAQCE TL G+ L+DT AIASS AAELYGL VLA+
Sbjct: 214 QALAQCEHTLTEFGIE-HREAVDDTAGAAKTVAEQNLQDTGAIASSLAAELYGLNVLAEN 272
Query: 423 IQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKI 482
IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ + EG LFK L FA R+I+LTKI
Sbjct: 273 IQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLE-EGPGQLFKALGVFALREINLTKI 331
Query: 483 ESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQASMAEVRAQNALSEIQEFTSFLRVLGS 542
ESRPH+ RP+R+ DD+ +K F+Y+FY+D +ASMA+ + QNAL ++EF +FLRVLGS
Sbjct: 332 ESRPHKKRPLRITDDSFSTPSKQFDYLFYMDLEASMADPKTQNALGNLKEFATFLRVLGS 391
Query: 543 YPMDMT 548
YP D+
Sbjct: 392 YPTDVN 397
>Os10g0523700 Prephenate dehydratase domain containing protein
Length = 408
Score = 229 bits (583), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/307 (42%), Positives = 180/307 (58%), Gaps = 17/307 (5%)
Query: 260 LRVAYQGVPGAYSEXXXXXXYPSCDAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIH 319
LRVA+QG PGAYSE P CD +PC F A AV+ DRA+LPVE+++ G+
Sbjct: 102 LRVAFQGAPGAYSEFAAKTALPGCDTVPCRAFADALAAVDGGAVDRAILPVESTMEGTAL 161
Query: 320 RNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRRDLLTRVISHPQALAQCELTLNAMGLNX 379
RNYDLLLRH L +V E+ L VH+CLLA+PGVR + RVISHP ALA C L +G++
Sbjct: 162 RNYDLLLRHDLVVVQEINLFVHYCLLAMPGVRAAEVRRVISHPMALAHCGRALARLGVDR 221
Query: 380 XXXXXXXXXXXXXXXXXXGLRDTAAIASSRAAELYGLQVLADGIQDDAGNVTRFVMLAR- 438
+ DTAAIAS RAA+LYGL VLA G+QD++ NVTRF++L++
Sbjct: 222 EPVEDTAGAVEMLRSNR--MLDTAAIASPRAADLYGLDVLAHGLQDESWNVTRFLLLSKP 279
Query: 439 -EPIIPRTDRPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKIESRPHRH-------- 489
P+ D KTS+V AH V+ KVLSAF+ R+I+LTK+E +
Sbjct: 280 PSPVTLPMDADAKTSMVVAHRGGSMMVVLKVLSAFSSRNINLTKLEVINNNDGGGGGGGA 339
Query: 490 ---RPIRLVDDANVG--TAKHFEYMFYIDFQASMAEVRAQNALSEIQEFTSFLRVLGSYP 544
P+ ++D + G T + F ++ Y+D + + + R +A+ EI+ F F+RVLG Y
Sbjct: 340 AAGHPVMILDTSARGAPTLRAFPHVLYVDCEGASHDPRVLDAIKEIERFAVFVRVLGCYA 399
Query: 545 MDMTPWE 551
D ++
Sbjct: 400 ADSNVYD 406
>Os02g0478525 Prephenate dehydratase domain containing protein
Length = 192
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/169 (55%), Positives = 99/169 (58%), Gaps = 40/169 (23%)
Query: 353 DLLTRVISHPQALAQCELTLNAMGLNXXXXXXXXXXXXXXXXX----------------- 395
DLLTRV SHPQ LAQCELTLNAM LN
Sbjct: 37 DLLTRVNSHPQVLAQCELTLNAMVLNSAVKSSSAARTCVKFCTKPIVVSATKSHPSMTPW 96
Query: 396 ---XXGLRDTAAIASSRAAELYGLQVLADGIQDDAGNVTRFVMLAREPIIPRTDRPFKTS 452
LR+TA IASS A +LYGLQVLADGIQDDAG+VTRFV T
Sbjct: 97 HVAAAELRETATIASSCAIDLYGLQVLADGIQDDAGDVTRFV----------------TK 140
Query: 453 IVFAHDREGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDANVG 501
I +REGTSV+FKVL AFAFRDISLTKIES PHRHRPIRL+DD NVG
Sbjct: 141 I----EREGTSVMFKVLPAFAFRDISLTKIESWPHRHRPIRLIDDTNVG 185
>Os04g0652200
Length = 264
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/98 (79%), Positives = 79/98 (80%)
Query: 369 ELTLNAMGLNXXXXXXXXXXXXXXXXXXXGLRDTAAIASSRAAELYGLQVLADGIQDDAG 428
ELTLNAMGLN GLRDTAAIASSRAA+LYGLQVLADGIQDDAG
Sbjct: 166 ELTLNAMGLNVAREAFDDTAAAAEHVVAAGLRDTAAIASSRAADLYGLQVLADGIQDDAG 225
Query: 429 NVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLF 466
NVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLF
Sbjct: 226 NVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLF 263
>Os06g0670900
Length = 311
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/98 (79%), Positives = 79/98 (80%)
Query: 369 ELTLNAMGLNXXXXXXXXXXXXXXXXXXXGLRDTAAIASSRAAELYGLQVLADGIQDDAG 428
ELTLNAMGLN GLRDTAAIASSRAA+LYGLQVLADGIQDDAG
Sbjct: 191 ELTLNAMGLNVAREAFDDTAAAAEHVVAAGLRDTAAIASSRAADLYGLQVLADGIQDDAG 250
Query: 429 NVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLF 466
NVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLF
Sbjct: 251 NVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLF 288
>Os01g0528300 Similar to HcrVf3 protein
Length = 263
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 75/78 (96%), Gaps = 1/78 (1%)
Query: 447 RPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKIESRPHRHR-PIRLVDDANVGTAKH 505
RPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKIESRPHRHR PI+ VD ANVGTAKH
Sbjct: 38 RPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKIESRPHRHRHPIQFVDGANVGTAKH 97
Query: 506 FEYMFYIDFQASMAEVRA 523
FEYMFYIDFQASMAEVRA
Sbjct: 98 FEYMFYIDFQASMAEVRA 115
>Os08g0411000
Length = 159
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 292 EVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVR 351
EV +A+ L V+ V S S R R R H G LPVHHCLLALPG+R
Sbjct: 28 EVCVEALAL------VIDVATSSPSSRERTGPRPRRQRRH-AGPPPLPVHHCLLALPGIR 80
Query: 352 RDLLTRVISHPQALAQCELTLNAMGLN 378
RDLLT +ISHPQALAQCELTLNAMGLN
Sbjct: 81 RDLLTHIISHPQALAQCELTLNAMGLN 107
>Os08g0429300
Length = 170
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 42/59 (71%)
Query: 268 PGAYSEXXXXXXYPSCDAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL 326
PGAYSE YPSCDAIPCDQFEVAFQAVELWIAD AVL V+NS +H N L
Sbjct: 112 PGAYSEAAAAKAYPSCDAIPCDQFEVAFQAVELWIADHAVLLVKNSSHAHMHYNQTYWL 170
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,110,564
Number of extensions: 586460
Number of successful extensions: 1719
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1701
Number of HSP's successfully gapped: 12
Length of query: 565
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 459
Effective length of database: 11,501,117
Effective search space: 5279012703
Effective search space used: 5279012703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)