Os10g0523700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prephenate dehydratase domain containing protein.
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Os10g0523700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prephenate dehydratase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.27 | 0.513 | 13.8 | -1.23 | 0.134 | 0.717 | 3.51 | -1.61 | 0.459 | 22.7 | 18.12 | 1698 | -- | -- |
| 123.32 | 0.517 | 13.8 | -1.25 | 0.124 | 0.741 | 3.37 | -- | 0.463 | 22.5 | 16.91 | 1728 | -- | -- |
| 147.66 | 0.566 | 13.8 | -1.19 | 0.538 | 0.797 | -- | -3.19 | 0.52 | 22.2 | 16.88 | 1062 | -- | -- |
| 169.55 | 0.606 | 13.8 | -1.25 | 0.116 | 0.718 | -- | -- | 0.464 | 22.3 | 13 | 1675 | -- | -- |
| 156.32 | 0.586 | 13.9 | -1.44 | -- | 0.134 | -- | 2.04 | 0.275 | -- | 13.42 | 1136 | -- | -- |
| 137.79 | 0.55 | 13.9 | -1.4 | 0.204 | -- | 3.25 | -- | 0.282 | 22.5 | -- | -- | -- | -- |
| 179.45 | 0.627 | 13.9 | -1.54 | 0.249 | -- | -- | -- | 0.268 | 1.48 | -- | -- | -- | -- |
| 169.94 | 0.607 | 13.8 | -1.33 | -- | 0.788 | -- | -- | 0.438 | -- | 12.56 | 1680 | -- | -- |
| 217.31 | 0.687 | 13.8 | -- | 0.158 | 0.957 | -- | -- | 0.645 | 23 | 11.8 | 1653 | -- | -- |
| 183.26 | 0.633 | 13.9 | -1.53 | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
| 241.9 | 0.728 | 13.8 | -- | 0.223 | -- | -- | -- | 0.44 | 1.25 | -- | -- | -- | -- |
| 216.57 | 0.685 | 13.8 | -- | -- | 1.1 | -- | -- | 0.65 | -- | 10.25 | 1674 | -- | -- |
| 244.97 | 0.731 | 13.8 | -- | -- | -- | -- | -- | 0.443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 117.12 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 4 | 117.19 | radiation | 10 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 7 | 117.20 | radiation | 10 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 15 | 117.24 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 69 | 118.19 | radiation | 10 | 1440 | < th | dose independent | sin | 19 | NA |
| 91 | 118.74 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 118 | 119.75 | radiation | 30 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 215 | 121.16 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 230 | 121.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 232 | 121.54 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 275 | 121.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 281 | 121.85 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 283 | 121.86 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 285 | 121.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 344 | 122.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 346 | 122.04 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 350 | 122.08 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 354 | 122.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 380 | 122.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 389 | 122.29 | wind | 3 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 391 | 122.30 | wind | 3 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 395 | 122.31 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 400 | 122.32 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 417 | 122.33 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 499 | 122.45 | wind | 3 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 501 | 122.47 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 502 | 122.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 541 | 122.66 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 547 | 122.67 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 609 | 122.77 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 651 | 122.88 | wind | 3 | 43200 | < th | dose dependent | rect. | 14 | 10 |
| 657 | 122.93 | wind | 3 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 664 | 122.96 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 674 | 123.00 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 677 | 123.02 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 689 | 123.04 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 696 | 123.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 714 | 123.08 | wind | 3 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 717 | 123.09 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 724 | 123.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 732 | 123.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 740 | 123.19 | radiation | 20 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 765 | 123.25 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 776 | 123.30 | wind | 5 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 780 | 123.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 19 |
| 781 | 123.32 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 784 | 123.33 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 803 | 123.39 | radiation | 20 | 1440 | < th | dose dependent | sin | 22 | NA |
| 820 | 123.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 827 | 123.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 828 | 123.45 | wind | 3 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 841 | 123.48 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 20 |
| 856 | 123.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 861 | 123.53 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 6 |
| 876 | 123.56 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 888 | 123.57 | radiation | 1 | 4320 | < th | dose independent | rect. | 24 | 5 |
| 895 | 123.58 | wind | 9 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 907 | 123.62 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 918 | 123.64 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 921 | 123.65 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 939 | 123.68 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 943 | 123.68 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 945 | 123.68 | wind | 5 | 43200 | < th | dose dependent | rect. | 14 | 6 |
| 949 | 123.69 | wind | 9 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 950 | 123.69 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 971 | 123.72 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 974 | 123.72 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 998 | 123.76 | humidity | 60 | 43200 | > th | dose dependent | sin | 16 | NA |
| 1000 | 123.77 | humidity | 80 | 43200 | > th | dose independent | sin | 15 | NA |