BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0523700 Os10g0523700|AK099858
(408 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0523700 Prephenate dehydratase domain containing protein 682 0.0
Os04g0406600 Prephenate dehydratase domain containing protein 248 4e-66
Os07g0694600 Prephenate dehydratase domain containing protein 225 5e-59
Os09g0566000 Prephenate dehydratase domain containing protein 224 9e-59
Os09g0565700 Prephenate dehydratase domain containing protein 224 1e-58
Os03g0286200 Similar to Prephenate dehydratase-like 221 6e-58
Os04g0652200 71 1e-12
Os06g0670900 70 2e-12
>Os10g0523700 Prephenate dehydratase domain containing protein
Length = 408
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/408 (87%), Positives = 355/408 (87%)
Query: 1 MAYTXXXXXXXXXXXXPKTNXXXXXXXXXXXXFVAAAAKINGVNGHSSKKSPNGKAQING 60
MAYT PKTN FVAAAAKINGVNGHSSKKSPNGKAQING
Sbjct: 1 MAYTSSSLHLHKHLLLPKTNPSSSYSRPPPPSFVAAAAKINGVNGHSSKKSPNGKAQING 60
Query: 61 DGKKGVNGSGRKKAAAQHINGNDRIHLSVSTGGAGGQDGFGLRVAFQGAPGAYSEFAAKT 120
DGKKGVNGSGRKKAAAQHINGNDRIHLSVSTGGAGGQDGFGLRVAFQGAPGAYSEFAAKT
Sbjct: 61 DGKKGVNGSGRKKAAAQHINGNDRIHLSVSTGGAGGQDGFGLRVAFQGAPGAYSEFAAKT 120
Query: 121 ALPGCDTVPCXXXXXXXXXXXXXXXXXXILPVESTMEGTALRNYDLLLRHDLVVVQEINL 180
ALPGCDTVPC ILPVESTMEGTALRNYDLLLRHDLVVVQEINL
Sbjct: 121 ALPGCDTVPCRAFADALAAVDGGAVDRAILPVESTMEGTALRNYDLLLRHDLVVVQEINL 180
Query: 181 FVHYCLLAMPGVRAAEVRRVISHPMALAHCGRALARLGVDREPVEDTAGAVEMLRSNRML 240
FVHYCLLAMPGVRAAEVRRVISHPMALAHCGRALARLGVDREPVEDTAGAVEMLRSNRML
Sbjct: 181 FVHYCLLAMPGVRAAEVRRVISHPMALAHCGRALARLGVDREPVEDTAGAVEMLRSNRML 240
Query: 241 DTAAIASPRAADLYGLDVLAHGLQDESWNVTRFLLLSKPPSPVTLPMDADAKTSMVVAHR 300
DTAAIASPRAADLYGLDVLAHGLQDESWNVTRFLLLSKPPSPVTLPMDADAKTSMVVAHR
Sbjct: 241 DTAAIASPRAADLYGLDVLAHGLQDESWNVTRFLLLSKPPSPVTLPMDADAKTSMVVAHR 300
Query: 301 GGSMMVVLKVLSAFSSRNINLTKLEVINNNDXXXXXXXXXXXHPVMILDTSARGAPTLRA 360
GGSMMVVLKVLSAFSSRNINLTKLEVINNND HPVMILDTSARGAPTLRA
Sbjct: 301 GGSMMVVLKVLSAFSSRNINLTKLEVINNNDGGGGGGGAAAGHPVMILDTSARGAPTLRA 360
Query: 361 FPHVLYVDCEGASHDPRVLDAIKEIERFAVFVRVLGCYAADSNVYDLQ 408
FPHVLYVDCEGASHDPRVLDAIKEIERFAVFVRVLGCYAADSNVYDLQ
Sbjct: 361 FPHVLYVDCEGASHDPRVLDAIKEIERFAVFVRVLGCYAADSNVYDLQ 408
>Os04g0406600 Prephenate dehydratase domain containing protein
Length = 436
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 205/368 (55%), Gaps = 32/368 (8%)
Query: 43 VNGHSSKKSPNGKAQINGDGK-------KGVNGSGRKKAAAQHINGNDRIHLSVSTGGAG 95
VNGH + P +A G VNG G K Q L +S
Sbjct: 72 VNGHVAPLVPEQQAAAEDGGAVLDLVPVSSVNGGGVAKNLPQP--------LRISDLSPA 123
Query: 96 GQDGFGLRVAFQGAPGAYSEFAAKTALPGCDTVPCXXXXXXXXXXXXXXXXXXILPVEST 155
G LRVA+QG PGAYSE AA A PGCD +PC +LPVE++
Sbjct: 124 PMHGSQLRVAYQGVPGAYSEKAAGKAYPGCDAIPCDQFEVAFSAVELWIADRAVLPVENS 183
Query: 156 MEGTALRNYDLLLRHDLVVVQEINLFVHYCLLAMPGVRAAEVRRVISHPMALAHCGRALA 215
+ G+ RNYDLLLRH L +V E+ L VH+CL+A+PGVR + RV+SHP ALA C L
Sbjct: 184 LGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGVRKECLTRVMSHPQALAQCEHTLT 243
Query: 216 RLGVD--REPVEDTAGAVEMLRSNRMLDTAAIASPRAADLYGLDVLAHGLQDESWNVTRF 273
+G++ RE +DTAGA E + +N + DTAAIAS RAA+LYG++VLA G+QD+ NVTRF
Sbjct: 244 AMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLADGIQDDCGNVTRF 303
Query: 274 LLLSKPPSPVTLPMDADAKTSMVVAHRGGSMMVVLKVLSAFSSRNINLTKLEVINNNDXX 333
++L++ P+ D KTS+V AH V+ KVLSAF+ R+I LTK+E +
Sbjct: 304 VMLAR--EPIVPRTDRPFKTSIVFAHDKEGTSVLFKVLSAFAFRDITLTKIESRPHRH-- 359
Query: 334 XXXXXXXXXHPVMILDTSARGAPTLRAFPHVLYVDCEGASHDPRVLDAIKEIERFAVFVR 393
P+ ++D + G T + F ++ YVD + + +PR +A+ E++ + F+R
Sbjct: 360 ---------RPIRLVDDANVG--TAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLR 408
Query: 394 VLGCYAAD 401
VLG Y D
Sbjct: 409 VLGSYPMD 416
>Os07g0694600 Prephenate dehydratase domain containing protein
Length = 364
Score = 225 bits (573), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 128/304 (42%), Positives = 179/304 (58%), Gaps = 17/304 (5%)
Query: 99 GFGLRVAFQGAPGAYSEFAAKTALPGCDTVPCXXXXXXXXXXXXXXXXXXILPVESTMEG 158
G GL+VA+QG PGAYSE AAK A P C TVPC +LP+E+++ G
Sbjct: 73 GDGLKVAYQGCPGAYSEAAAKKAYPSCHTVPCEYFETAFQAVENWVADRAVLPLENSLGG 132
Query: 159 TALRNYDLLLRHDLVVVQEINLFVHYCLLAMPGVRAAEVRRVISHPMALAHCGRALARLG 218
+ RNYDLLLRH L +V E+ L V +CLLA GV+ +R +SHP ALA C + L +LG
Sbjct: 133 SIHRNYDLLLRHRLHIVGEVRLAVRHCLLANRGVKIQNLRSAMSHPQALAQCEQTLTKLG 192
Query: 219 VD-REPVEDTAGAVEMLRSNRMLDTAAIASPRAADLYGLDVLAHGLQDESWNVTRFLLLS 277
++ RE V+DTAGA +++ ++ DT A+AS AA LYGLD+LA +QD++ NVTRF++L+
Sbjct: 193 IEHREAVDDTAGAAKLIAEQKLQDTGAVASSLAAQLYGLDILAENIQDDTDNVTRFMMLA 252
Query: 278 KPPSPVTLPMDADAKTSMVVAHRGGSMMVVLKVLSAFSSRNINLTKLEVINNNDXXXXXX 337
+ P+ D KTS+V + G + K L+ F+ R INLTK+E
Sbjct: 253 R--EPIIPRTDKPFKTSIVFSLEEGPGQ-LFKALAVFALRKINLTKME-----------S 298
Query: 338 XXXXXHPVMILDTSARGAPTLRAFPHVLYVDCEGASHDPRVLDAIKEIERFAVFVRVLGC 397
P+ I D + AP L+ F ++ YVD E + DP +A+ ++ FA F+RVLG
Sbjct: 299 RPHKKKPLRIADDNC-SAP-LKHFDYLFYVDLEASMADPNAQNALANLKEFATFLRVLGS 356
Query: 398 YAAD 401
Y D
Sbjct: 357 YPTD 360
>Os09g0566000 Prephenate dehydratase domain containing protein
Length = 565
Score = 224 bits (571), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 190/322 (59%), Gaps = 17/322 (5%)
Query: 87 LSVSTGGAGGQDGFGLRVAFQGAPGAYSEFAAKTALPGCDTVPCXXXXXXXXXXXXXXXX 146
L+++ G LRVA+QG PGAYSE AA A P CD +PC
Sbjct: 245 LTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAAKAYPSCDAIPCDQFEVAFQAVELWIAD 304
Query: 147 XXILPVESTMEGTALRNYDLLLRHDLVVVQEINLFVHYCLLAMPGVRAAEVRRVISHPMA 206
+LPVE+++ G+ RNYDLLLRH L +V E+ L VH+CLLA+PGVR + RVISHP A
Sbjct: 305 RAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRRDLLTRVISHPQA 364
Query: 207 LAHCGRALARLGVD--REPVEDTAGAVEMLRSNRMLDTAAIASPRAADLYGLDVLAHGLQ 264
LA C L +G++ RE +DTA A E + + + DTAAIAS RAA+LYGL VLA G+Q
Sbjct: 365 LAQCELTLNAMGLNVAREAFDDTAAAAEHVAAAGLRDTAAIASSRAAELYGLQVLADGIQ 424
Query: 265 DESWNVTRFLLLSKPPSPVTLPMDADAKTSMVVAHRGGSMMVVLKVLSAFSSRNINLTKL 324
D++ NVTRF++L++ P+ D KTS+V AH V+ KVLSAF+ R+I+LTK+
Sbjct: 425 DDAGNVTRFVMLAR--EPIIPRTDRPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKI 482
Query: 325 EVINNNDXXXXXXXXXXXHPVMILDTSARGAPTLRAFPHVLYVDCEGASHDPRVLDAIKE 384
E + P+ ++D + G T + F ++ Y+D + + + R +A+ E
Sbjct: 483 ESRPHRH-----------RPIRLVDDANVG--TAKHFEYMFYIDFQASMAEVRAQNALSE 529
Query: 385 IERFAVFVRVLGCYAADSNVYD 406
I+ F F+RVLG Y D ++
Sbjct: 530 IQEFTSFLRVLGSYPMDMTPWE 551
>Os09g0565700 Prephenate dehydratase domain containing protein
Length = 401
Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 190/322 (59%), Gaps = 17/322 (5%)
Query: 87 LSVSTGGAGGQDGFGLRVAFQGAPGAYSEFAAKTALPGCDTVPCXXXXXXXXXXXXXXXX 146
L+++ G LRVA+QG PGAYSE AA A P CD +PC
Sbjct: 78 LTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAAKAYPSCDAIPCDQFEVAFQAVELWIAD 137
Query: 147 XXILPVESTMEGTALRNYDLLLRHDLVVVQEINLFVHYCLLAMPGVRAAEVRRVISHPMA 206
+LPVE+++ G+ RNYDLLLRH L +V E+ L VH+CLLA+PGVR + RVISHP A
Sbjct: 138 RAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRRDLLTRVISHPQA 197
Query: 207 LAHCGRALARLGVD--REPVEDTAGAVEMLRSNRMLDTAAIASPRAADLYGLDVLAHGLQ 264
LA C L +G++ RE +DTA A E + + + DTAAIAS RAA+LYGL VLA G+Q
Sbjct: 198 LAQCELTLNAMGLNVAREAFDDTAAAAEHVAAAGLRDTAAIASSRAAELYGLQVLADGIQ 257
Query: 265 DESWNVTRFLLLSKPPSPVTLPMDADAKTSMVVAHRGGSMMVVLKVLSAFSSRNINLTKL 324
D++ NVTRF++L++ P+ D KTS+V AH V+ KVLSAF+ R+I+LTK+
Sbjct: 258 DDAGNVTRFVMLAR--EPIIPRTDRPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKI 315
Query: 325 EVINNNDXXXXXXXXXXXHPVMILDTSARGAPTLRAFPHVLYVDCEGASHDPRVLDAIKE 384
E + P+ ++D + G T + F ++ Y+D + + + R +A+ E
Sbjct: 316 ESRPHRH-----------RPIRLVDDANVG--TAKHFEYMFYIDFQASMAEVRAQNALSE 362
Query: 385 IERFAVFVRVLGCYAADSNVYD 406
I+ F F+RVLG Y D ++
Sbjct: 363 IQEFTSFLRVLGSYPMDMTPWE 384
>Os03g0286200 Similar to Prephenate dehydratase-like
Length = 399
Score = 221 bits (564), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 192/355 (54%), Gaps = 28/355 (7%)
Query: 58 INGDGKKGVNG--------SGRKKAAAQHINGNDRIHLSVSTGGAGGQDGFGLRVAFQGA 109
+NG G GV+G A++ ++ R S G G+ GL+VA+QG
Sbjct: 62 VNGVGPAGVDGLAGPPVPVPDSPAPASRDLHWLPRPLTSADLMGVSGE---GLKVAYQGC 118
Query: 110 PGAYSEFAAKTALPGCDTVPCXXXXXXXXXXXXXXXXXXILPVESTMEGTALRNYDLLLR 169
PGAYSE AAK A P C TVPC +LP+E+++ G+ RN+DLLLR
Sbjct: 119 PGAYSEAAAKKAYPNCQTVPCEHFDTAFKAVENWLADRAVLPLENSLGGSIHRNFDLLLR 178
Query: 170 HDLVVVQEINLFVHYCLLAMPGVRAAEVRRVISHPMALAHCGRALARLGVD-REPVEDTA 228
H L +V E+ L V +CLLA PGV+ ++ +SHP ALA C L G++ RE V+DTA
Sbjct: 179 HRLHIVGEVRLAVRHCLLANPGVKIENLKSAMSHPQALAQCEHTLTEFGIEHREAVDDTA 238
Query: 229 GAVEMLRSNRMLDTAAIASPRAADLYGLDVLAHGLQDESWNVTRFLLLSKPPSPVTLPMD 288
GA + + + DT AIAS AA+LYGL+VLA +QD+ NVTRF++L++ P+ D
Sbjct: 239 GAAKTVAEQNLQDTGAIASSLAAELYGLNVLAENIQDDKDNVTRFMMLAR--EPIIPRTD 296
Query: 289 ADAKTSMVVAHRGGSMMVVLKVLSAFSSRNINLTKLEVINNNDXXXXXXXXXXXHPVMIL 348
KTS+V + G + K L F+ R INLTK+E P+ I
Sbjct: 297 KPFKTSIVFSLEEGPGQ-LFKALGVFALREINLTKIE-----------SRPHKKRPLRIT 344
Query: 349 DTSARGAPTLRAFPHVLYVDCEGASHDPRVLDAIKEIERFAVFVRVLGCYAADSN 403
D S P+ + F ++ Y+D E + DP+ +A+ ++ FA F+RVLG Y D N
Sbjct: 345 DDSF-STPS-KQFDYLFYMDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDVN 397
>Os04g0652200
Length = 264
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 217 LGVDREPVEDTAGAVEMLRSNRMLDTAAIASPRAADLYGLDVLAHGLQDESWNVTRFLLL 276
L V RE +DTA A E + + + DTAAIAS RAADLYGL VLA G+QD++ NVTRF++L
Sbjct: 174 LNVAREAFDDTAAAAEHVVAAGLRDTAAIASSRAADLYGLQVLADGIQDDAGNVTRFVML 233
Query: 277 SKPPSPVTLPMDADAKTSMVVAH 299
++ P+ D KTS+V AH
Sbjct: 234 AR--EPIIPRTDRPFKTSIVFAH 254
>Os06g0670900
Length = 311
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 217 LGVDREPVEDTAGAVEMLRSNRMLDTAAIASPRAADLYGLDVLAHGLQDESWNVTRFLLL 276
L V RE +DTA A E + + + DTAAIAS RAADLYGL VLA G+QD++ NVTRF++L
Sbjct: 199 LNVAREAFDDTAAAAEHVVAAGLRDTAAIASSRAADLYGLQVLADGIQDDAGNVTRFVML 258
Query: 277 SKPPSPVTLPMDADAKTSMVVAH 299
++ P+ D KTS+V AH
Sbjct: 259 AR--EPIIPRTDRPFKTSIVFAH 279
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,227,349
Number of extensions: 506103
Number of successful extensions: 1852
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1830
Number of HSP's successfully gapped: 8
Length of query: 408
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 305
Effective length of database: 11,657,759
Effective search space: 3555616495
Effective search space used: 3555616495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)