Os04g0406600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prephenate dehydratase domain containing protein.
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Os04g0406600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prephenate dehydratase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 501.08 | 1.05 | 6.57 | -3.27 | 2.37 | 1.61 | 0.366 | 0.845 | -0.759 | 6.1 | 77.37 | 2664 | -- | -- |
| 501.87 | 1.04 | 6.58 | -3.34 | 2.37 | 1.68 | 0.37 | -- | -0.756 | 6.1 | 77.04 | 2663 | -- | -- |
| 501.41 | 1.04 | 6.57 | -3.27 | 2.37 | 1.61 | -- | 0.851 | -0.757 | 6.1 | 77.18 | 2664 | -- | -- |
| 502.21 | 1.04 | 6.58 | -3.34 | 2.37 | 1.68 | -- | -- | -0.762 | 6.1 | 77.17 | 2663 | -- | -- |
| 789.46 | 1.31 | 6.62 | -3.17 | -- | 1.84 | -- | 0.949 | -0.741 | -- | 81 | 2716 | -- | -- |
| 572.76 | 1.12 | 6.61 | -3.11 | 2.44 | -- | 0.548 | -- | -0.889 | 5.73 | -- | -- | -- | -- |
| 573.49 | 1.12 | 6.61 | -3.11 | 2.44 | -- | -- | -- | -0.891 | 5.74 | -- | -- | -- | -- |
| 790.42 | 1.31 | 6.63 | -3.25 | -- | 1.93 | -- | -- | -0.746 | -- | 81 | 2712 | -- | -- |
| 773.64 | 1.3 | 6.56 | -- | 2.35 | 1.84 | -- | -- | -0.683 | 6.18 | 103.8 | 2646 | -- | -- |
| 883.16 | 1.39 | 6.65 | -3.03 | -- | -- | -- | -- | -0.833 | -- | -- | -- | -- | -- |
| 828.57 | 1.35 | 6.54 | -- | 2.39 | -- | -- | -- | -0.544 | 5.8 | -- | -- | -- | -- |
| 1053.25 | 1.51 | 6.6 | -- | -- | 2 | -- | -- | -0.626 | -- | 92 | 2722 | -- | -- |
| 1126.07 | 1.57 | 6.58 | -- | -- | -- | -- | -- | -0.496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 501.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 2 | 501.78 | humidity | 70 | 1440 | > th | dose independent | sin | 10 | NA |
| 6 | 502.92 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 7 | 503.18 | humidity | 70 | 1440 | < th | dose independent | sin | 10 | NA |
| 13 | 504.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 24 | 505.18 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 26 | 505.29 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 32 | 505.59 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 34 | 505.88 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 36 | 505.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 66 | 507.91 | humidity | 80 | 1440 | < th | dose dependent | sin | 10 | NA |
| 74 | 508.38 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 4 |
| 98 | 509.74 | humidity | 70 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 105 | 510.11 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 124 | 511.06 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 127 | 511.25 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 130 | 511.34 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 131 | 511.35 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 151 | 511.51 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 162 | 511.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 163 | 511.84 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 164 | 511.85 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 166 | 511.86 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 220 | 513.39 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 241 | 514.03 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 254 | 514.52 | humidity | 70 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 283 | 514.81 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 298 | 514.89 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 315 | 514.98 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 316 | 514.98 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 344 | 514.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 386 | 515.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 391 | 515.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 20 |
| 392 | 515.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 22 |
| 401 | 515.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 409 | 515.04 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 414 | 515.04 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 428 | 515.05 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 487 | 515.47 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 6 |
| 500 | 515.70 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 11 |
| 509 | 515.85 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 528 | 515.92 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 531 | 516.01 | humidity | 90 | 1440 | < th | dose dependent | sin | 6 | NA |
| 544 | 516.19 | humidity | 60 | 1440 | > th | dose dependent | rect. | 4 | 9 |
| 691 | 517.43 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 716 | 517.58 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 803 | 518.18 | humidity | 50 | 1440 | > th | dose dependent | sin | 4 | NA |
| 822 | 518.39 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 868 | 518.92 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 883 | 519.07 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 888 | 519.09 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 895 | 519.11 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 991 | 519.48 | wind | 1 | 14400 | < th | dose dependent | rect. | 14 | 1 |