BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0406600 Os04g0406600|AK103609
(436 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0406600 Prephenate dehydratase domain containing protein 810 0.0
Os09g0565700 Prephenate dehydratase domain containing protein 574 e-164
Os09g0566000 Prephenate dehydratase domain containing protein 569 e-162
Os03g0286200 Similar to Prephenate dehydratase-like 411 e-115
Os07g0694600 Prephenate dehydratase domain containing protein 410 e-114
Os10g0523700 Prephenate dehydratase domain containing protein 264 1e-70
Os04g0652200 162 5e-40
Os06g0670900 161 8e-40
Os02g0478525 Prephenate dehydratase domain containing protein 149 4e-36
Os01g0528300 Similar to HcrVf3 protein 145 7e-35
Os08g0429300 80 2e-15
Os08g0411000 75 1e-13
AK110220 72 7e-13
>Os04g0406600 Prephenate dehydratase domain containing protein
Length = 436
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/423 (94%), Positives = 400/423 (94%)
Query: 1 MAAASLIKAPVGQNPARMGAXXXXXXXXXXXCSLQGAVVGGRAEWQSSCAVLSSKVXXXX 60
MAAASLIKAPVGQNPARMGA CSLQGAVVGGRAEWQSSCAVLSSKV
Sbjct: 1 MAAASLIKAPVGQNPARMGAGRSSGGGGVVRCSLQGAVVGGRAEWQSSCAVLSSKVAALG 60
Query: 61 XXXXXXXXPSFVNGHVAPLVPEQQAAAEDGGAVLDLVPVSSVNGGGVAKNLPQPLRISDL 120
PSFVNGHVAPLVPEQQAAAEDGGAVLDLVPVSSVNGGGVAKNLPQPLRISDL
Sbjct: 61 AASPHAAAPSFVNGHVAPLVPEQQAAAEDGGAVLDLVPVSSVNGGGVAKNLPQPLRISDL 120
Query: 121 SPAPMHGSQLRVAYQGVPGAYSEKAAGKAYPGCDAIPCDQFEVAFSAVELWIADRAVLPV 180
SPAPMHGSQLRVAYQGVPGAYSEKAAGKAYPGCDAIPCDQFEVAFSAVELWIADRAVLPV
Sbjct: 121 SPAPMHGSQLRVAYQGVPGAYSEKAAGKAYPGCDAIPCDQFEVAFSAVELWIADRAVLPV 180
Query: 181 ENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGVRKECLTRVMSHPQALAQCEH 240
ENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGVRKECLTRVMSHPQALAQCEH
Sbjct: 181 ENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGVRKECLTRVMSHPQALAQCEH 240
Query: 241 TLTAMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLADGIQDDCGNV 300
TLTAMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLADGIQDDCGNV
Sbjct: 241 TLTAMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLADGIQDDCGNV 300
Query: 301 TRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTSVLFKVLSAFAFRDITLTKIESRPHRHR 360
TRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTSVLFKVLSAFAFRDITLTKIESRPHRHR
Sbjct: 301 TRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTSVLFKVLSAFAFRDITLTKIESRPHRHR 360
Query: 361 PIRLVDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVLGSYPMDMTPM 420
PIRLVDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVLGSYPMDMTPM
Sbjct: 361 PIRLVDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVLGSYPMDMTPM 420
Query: 421 TAG 423
TAG
Sbjct: 421 TAG 423
>Os09g0565700 Prephenate dehydratase domain containing protein
Length = 401
Score = 574 bits (1479), Expect = e-164, Method: Compositional matrix adjust.
Identities = 295/379 (77%), Positives = 319/379 (84%), Gaps = 23/379 (6%)
Query: 41 GRAEWQSSCAVLSSKVXXXXXXXXXXXXPSFVNGHVAPLVPEQQAAAEDGGAVLDLVPVS 100
RA W ++CA + +V P+ + PL LDL+PVS
Sbjct: 27 SRAHWHATCAAIR-RVPRVNGDSNSSIKPALADHAAPPLD-------------LDLLPVS 72
Query: 101 SVNGGGVAKNLPQPLRISDLSPAPMHGSQLRVAYQGVPGAYSEKAAGKAYPGCDAIPCDQ 160
NLP+PL I+DLSPAPMHGSQLRVAYQGVPGAYSE AA KAYP CDAIPCDQ
Sbjct: 73 ---------NLPRPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAAKAYPSCDAIPCDQ 123
Query: 161 FEVAFSAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGV 220
FEVAF AVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCL+ALPGV
Sbjct: 124 FEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV 183
Query: 221 RKECLTRVMSHPQALAQCEHTLTAMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRA 280
R++ LTRV+SHPQALAQCE TL AMGLNV REAFDDTA AAE+VAA GLRDTAAIASSRA
Sbjct: 184 RRDLLTRVISHPQALAQCELTLNAMGLNVAREAFDDTAAAAEHVAAAGLRDTAAIASSRA 243
Query: 281 AELYGMEVLADGIQDDCGNVTRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTSVLFKVLS 340
AELYG++VLADGIQDD GNVTRFVMLAREPI+PRTDRPFKTSIVFAHD+EGTSVLFKVLS
Sbjct: 244 AELYGLQVLADGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLFKVLS 303
Query: 341 AFAFRDITLTKIESRPHRHRPIRLVDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEV 400
AFAFRDI+LTKIESRPHRHRPIRLVDDANVGTAKHFEYMFY+DFQAS+AE RAQNAL+E+
Sbjct: 304 AFAFRDISLTKIESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQASMAEVRAQNALSEI 363
Query: 401 QEYTSFLRVLGSYPMDMTP 419
QE+TSFLRVLGSYPMDMTP
Sbjct: 364 QEFTSFLRVLGSYPMDMTP 382
>Os09g0566000 Prephenate dehydratase domain containing protein
Length = 565
Score = 569 bits (1467), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/326 (87%), Positives = 304/326 (93%), Gaps = 9/326 (2%)
Query: 94 LDLVPVSSVNGGGVAKNLPQPLRISDLSPAPMHGSQLRVAYQGVPGAYSEKAAGKAYPGC 153
LDL+PVS NLP+PL I+DLSPAPMHGSQLRVAYQGVPGAYSE AA KAYP C
Sbjct: 233 LDLLPVS---------NLPRPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAAKAYPSC 283
Query: 154 DAIPCDQFEVAFSAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHC 213
DAIPCDQFEVAF AVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHC
Sbjct: 284 DAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHC 343
Query: 214 LMALPGVRKECLTRVMSHPQALAQCEHTLTAMGLNVVREAFDDTAGAAEYVAANGLRDTA 273
L+ALPGVR++ LTRV+SHPQALAQCE TL AMGLNV REAFDDTA AAE+VAA GLRDTA
Sbjct: 344 LLALPGVRRDLLTRVISHPQALAQCELTLNAMGLNVAREAFDDTAAAAEHVAAAGLRDTA 403
Query: 274 AIASSRAAELYGMEVLADGIQDDCGNVTRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTS 333
AIASSRAAELYG++VLADGIQDD GNVTRFVMLAREPI+PRTDRPFKTSIVFAHD+EGTS
Sbjct: 404 AIASSRAAELYGLQVLADGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTS 463
Query: 334 VLFKVLSAFAFRDITLTKIESRPHRHRPIRLVDDANVGTAKHFEYMFYVDFQASLAEPRA 393
VLFKVLSAFAFRDI+LTKIESRPHRHRPIRLVDDANVGTAKHFEYMFY+DFQAS+AE RA
Sbjct: 464 VLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDANVGTAKHFEYMFYIDFQASMAEVRA 523
Query: 394 QNALAEVQEYTSFLRVLGSYPMDMTP 419
QNAL+E+QE+TSFLRVLGSYPMDMTP
Sbjct: 524 QNALSEIQEFTSFLRVLGSYPMDMTP 549
>Os03g0286200 Similar to Prephenate dehydratase-like
Length = 399
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/308 (64%), Positives = 241/308 (78%), Gaps = 4/308 (1%)
Query: 111 LPQPLRISDLSPAPMHGSQLRVAYQGVPGAYSEKAAGKAYPGCDAIPCDQFEVAFSAVEL 170
LP+PL +DL + G L+VAYQG PGAYSE AA KAYP C +PC+ F+ AF AVE
Sbjct: 94 LPRPLTSADL--MGVSGEGLKVAYQGCPGAYSEAAAKKAYPNCQTVPCEHFDTAFKAVEN 151
Query: 171 WIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGVRKECLTRVMS 230
W+ADRAVLP+ENSLGGSIHRN+DLLLRHRLHIVGEV+L V HCL+A PGV+ E L MS
Sbjct: 152 WLADRAVLPLENSLGGSIHRNFDLLLRHRLHIVGEVRLAVRHCLLANPGVKIENLKSAMS 211
Query: 231 HPQALAQCEHTLTAMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLA 290
HPQALAQCEHTLT G+ REA DDTAGAA+ VA L+DT AIASS AAELYG+ VLA
Sbjct: 212 HPQALAQCEHTLTEFGIE-HREAVDDTAGAAKTVAEQNLQDTGAIASSLAAELYGLNVLA 270
Query: 291 DGIQDDCGNVTRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTSVLFKVLSAFAFRDITLT 350
+ IQDD NVTRF+MLAREPI+PRTD+PFKTSIVF+ + EG LFK L FA R+I LT
Sbjct: 271 ENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLE-EGPGQLFKALGVFALREINLT 329
Query: 351 KIESRPHRHRPIRLVDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVL 410
KIESRPH+ RP+R+ DD+ +K F+Y+FY+D +AS+A+P+ QNAL ++E+ +FLRVL
Sbjct: 330 KIESRPHKKRPLRITDDSFSTPSKQFDYLFYMDLEASMADPKTQNALGNLKEFATFLRVL 389
Query: 411 GSYPMDMT 418
GSYP D+
Sbjct: 390 GSYPTDVN 397
>Os07g0694600 Prephenate dehydratase domain containing protein
Length = 364
Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/309 (64%), Positives = 243/309 (78%), Gaps = 4/309 (1%)
Query: 110 NLPQPLRISDLSPAPMHGSQLRVAYQGVPGAYSEKAAGKAYPGCDAIPCDQFEVAFSAVE 169
+LP+PL +DL A G L+VAYQG PGAYSE AA KAYP C +PC+ FE AF AVE
Sbjct: 58 SLPRPLTSADLMEA--SGDGLKVAYQGCPGAYSEAAAKKAYPSCHTVPCEYFETAFQAVE 115
Query: 170 LWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGVRKECLTRVM 229
W+ADRAVLP+ENSLGGSIHRNYDLLLRHRLHIVGEV+L V HCL+A GV+ + L M
Sbjct: 116 NWVADRAVLPLENSLGGSIHRNYDLLLRHRLHIVGEVRLAVRHCLLANRGVKIQNLRSAM 175
Query: 230 SHPQALAQCEHTLTAMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVL 289
SHPQALAQCE TLT +G+ REA DDTAGAA+ +A L+DT A+ASS AA+LYG+++L
Sbjct: 176 SHPQALAQCEQTLTKLGIE-HREAVDDTAGAAKLIAEQKLQDTGAVASSLAAQLYGLDIL 234
Query: 290 ADGIQDDCGNVTRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTSVLFKVLSAFAFRDITL 349
A+ IQDD NVTRF+MLAREPI+PRTD+PFKTSIVF+ + EG LFK L+ FA R I L
Sbjct: 235 AENIQDDTDNVTRFMMLAREPIIPRTDKPFKTSIVFSLE-EGPGQLFKALAVFALRKINL 293
Query: 350 TKIESRPHRHRPIRLVDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRV 409
TK+ESRPH+ +P+R+ DD KHF+Y+FYVD +AS+A+P AQNALA ++E+ +FLRV
Sbjct: 294 TKMESRPHKKKPLRIADDNCSAPLKHFDYLFYVDLEASMADPNAQNALANLKEFATFLRV 353
Query: 410 LGSYPMDMT 418
LGSYP D++
Sbjct: 354 LGSYPTDVS 362
>Os10g0523700 Prephenate dehydratase domain containing protein
Length = 408
Score = 264 bits (674), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/368 (42%), Positives = 214/368 (58%), Gaps = 32/368 (8%)
Query: 72 VNGHVAPLVPEQQAAAEDGGAVLDLVPVSSVNGGGVAKNLPQP--------LRISDLSPA 123
VNGH + P +A G VNG G K Q L +S
Sbjct: 43 VNGHSSKKSPNGKAQINGDGK-------KGVNGSGRKKAAAQHINGNDRIHLSVSTGGAG 95
Query: 124 PMHGSQLRVAYQGVPGAYSEKAAGKAYPGCDAIPCDQFEVAFSAVELWIADRAVLPVENS 183
G LRVA+QG PGAYSE AA A PGCD +PC F A +AV+ DRA+LPVE++
Sbjct: 96 GQDGFGLRVAFQGAPGAYSEFAAKTALPGCDTVPCRAFADALAAVDGGAVDRAILPVEST 155
Query: 184 LGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGVRKECLTRVMSHPQALAQCEHTLT 243
+ G+ RNYDLLLRH L +V E+ L VH+CL+A+PGVR + RV+SHP ALA C L
Sbjct: 156 MEGTALRNYDLLLRHDLVVVQEINLFVHYCLLAMPGVRAAEVRRVISHPMALAHCGRALA 215
Query: 244 AMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLADGIQDDCGNVTRF 303
+G++ RE +DTAGA E + +N + DTAAIAS RAA+LYG++VLA G+QD+ NVTRF
Sbjct: 216 RLGVD--REPVEDTAGAVEMLRSNRMLDTAAIASPRAADLYGLDVLAHGLQDESWNVTRF 273
Query: 304 VMLAR--EPIVPRTDRPFKTSIVFAHDKEGTSVLFKVLSAFAFRDITLTKIESRPHRH-- 359
++L++ P+ D KTS+V AH V+ KVLSAF+ R+I LTK+E +
Sbjct: 274 LLLSKPPSPVTLPMDADAKTSMVVAHRGGSMMVVLKVLSAFSSRNINLTKLEVINNNDGG 333
Query: 360 ---------RPIRLVDDANVG--TAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLR 408
P+ ++D + G T + F ++ YVD + + +PR +A+ E++ + F+R
Sbjct: 334 GGGGGAAAGHPVMILDTSARGAPTLRAFPHVLYVDCEGASHDPRVLDAIKEIERFAVFVR 393
Query: 409 VLGSYPMD 416
VLG Y D
Sbjct: 394 VLGCYAAD 401
>Os04g0652200
Length = 264
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/98 (86%), Positives = 91/98 (92%)
Query: 239 EHTLTAMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLADGIQDDCG 298
E TL AMGLNV REAFDDTA AAE+V A GLRDTAAIASSRAA+LYG++VLADGIQDD G
Sbjct: 166 ELTLNAMGLNVAREAFDDTAAAAEHVVAAGLRDTAAIASSRAADLYGLQVLADGIQDDAG 225
Query: 299 NVTRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTSVLF 336
NVTRFVMLAREPI+PRTDRPFKTSIVFAHD+EGTSVLF
Sbjct: 226 NVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLF 263
>Os06g0670900
Length = 311
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 85/98 (86%), Positives = 91/98 (92%)
Query: 239 EHTLTAMGLNVVREAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLADGIQDDCG 298
E TL AMGLNV REAFDDTA AAE+V A GLRDTAAIASSRAA+LYG++VLADGIQDD G
Sbjct: 191 ELTLNAMGLNVAREAFDDTAAAAEHVVAAGLRDTAAIASSRAADLYGLQVLADGIQDDAG 250
Query: 299 NVTRFVMLAREPIVPRTDRPFKTSIVFAHDKEGTSVLF 336
NVTRFVMLAREPI+PRTDRPFKTSIVFAHD+EGTSVLF
Sbjct: 251 NVTRFVMLAREPIIPRTDRPFKTSIVFAHDREGTSVLF 288
>Os02g0478525 Prephenate dehydratase domain containing protein
Length = 192
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 101/167 (60%), Gaps = 40/167 (23%)
Query: 225 LTRVMSHPQALAQCEHTLTAMGLN--------------------VVREAFDDTAGAAEYV 264
LTRV SHPQ LAQCE TL AM LN VV + +V
Sbjct: 39 LTRVNSHPQVLAQCELTLNAMVLNSAVKSSSAARTCVKFCTKPIVVSATKSHPSMTPWHV 98
Query: 265 AANGLRDTAAIASSRAAELYGMEVLADGIQDDCGNVTRFVMLAREPIVPRTDRPFKTSIV 324
AA LR+TA IASS A +LYG++VLADGIQDD G+VTRFV T I
Sbjct: 99 AAAELRETATIASSCAIDLYGLQVLADGIQDDAGDVTRFV----------------TKI- 141
Query: 325 FAHDKEGTSVLFKVLSAFAFRDITLTKIESRPHRHRPIRLVDDANVG 371
++EGTSV+FKVL AFAFRDI+LTKIES PHRHRPIRL+DD NVG
Sbjct: 142 ---EREGTSVMFKVLPAFAFRDISLTKIESWPHRHRPIRLIDDTNVG 185
>Os01g0528300 Similar to HcrVf3 protein
Length = 263
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/78 (88%), Positives = 74/78 (94%), Gaps = 1/78 (1%)
Query: 317 RPFKTSIVFAHDKEGTSVLFKVLSAFAFRDITLTKIESRPHRHR-PIRLVDDANVGTAKH 375
RPFKTSIVFAHD+EGTSVLFKVLSAFAFRDI+LTKIESRPHRHR PI+ VD ANVGTAKH
Sbjct: 38 RPFKTSIVFAHDREGTSVLFKVLSAFAFRDISLTKIESRPHRHRHPIQFVDGANVGTAKH 97
Query: 376 FEYMFYVDFQASLAEPRA 393
FEYMFY+DFQAS+AE RA
Sbjct: 98 FEYMFYIDFQASMAEVRA 115
>Os08g0429300
Length = 170
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 44/59 (74%)
Query: 138 PGAYSEKAAGKAYPGCDAIPCDQFEVAFSAVELWIADRAVLPVENSLGGSIHRNYDLLL 196
PGAYSE AA KAYP CDAIPCDQFEVAF AVELWIAD AVL V+NS +H N L
Sbjct: 112 PGAYSEAAAAKAYPSCDAIPCDQFEVAFQAVELWIADHAVLLVKNSSHAHMHYNQTYWL 170
>Os08g0411000
Length = 159
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
Query: 197 RHRLHIVGEVQLPVHHCLMALPGVRKECLTRVMSHPQALAQCEHTLTAMGLN 248
R R H G LPVHHCL+ALPG+R++ LT ++SHPQALAQCE TL AMGLN
Sbjct: 57 RQRRH-AGPPPLPVHHCLLALPGIRRDLLTHIISHPQALAQCELTLNAMGLN 107
>AK110220
Length = 1018
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 97/236 (41%), Gaps = 56/236 (23%)
Query: 132 VAYQGVPGAYSEKAAGKAY--PGCDAIPCDQFEVAFSAVELWI---ADRAVLPVENSLGG 186
VAY G G YS +AA K + G + IP A V A A++PVENS G
Sbjct: 482 VAYLGPTGTYSHQAALKVFGETGTNLIPMQSITGAIDFVRRGTPGNAKIAIVPVENSTFG 541
Query: 187 SIHRNYDLLL------RH--------RLHIVGEVQLPVHHCLMALPG------------- 219
+ D LL RH LH+VGE L V H L+ P
Sbjct: 542 PVRDTLDNLLNISNGDRHAMRPSEGAHLHVVGEACLAVDHALLCGPRTYQRLLALQDDSD 601
Query: 220 ----VRKECL---TRVMSHPQALAQCEHTLTAMGLNVVREAFDDTAGAA------EYVAA 266
+R + L T V+SH QAL QC LT ++A D TA AA E A
Sbjct: 602 ANAPIRDDTLSNITNVISHEQALGQCARYLTRYLPQARKKAVDSTAAAAITALEFEAGTA 661
Query: 267 NGLRDTAAIASSRAA-----------ELYGMEVLADGIQDDCGNVTRFVMLAREPI 311
G+ ++ S + + G+ VL IQD N TRF++LA EP+
Sbjct: 662 PGMASGESLGFSSNSLVVAVGAEAAVKTVGVRVLRSKIQDVQDNRTRFLVLASEPL 717
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,825,505
Number of extensions: 575446
Number of successful extensions: 1312
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1298
Number of HSP's successfully gapped: 13
Length of query: 436
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 332
Effective length of database: 11,605,545
Effective search space: 3853040940
Effective search space used: 3853040940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)