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Os03g0286200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Prephenate dehydratase-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0192) R2 : 0.879
β1 : -1.29 (0.0702) R2dD : 0.0935 R2D : 0.0571
β2 : 1.75 (0.059) R2dC : 0.346 R2C : 0.6
β3 : -1.31 (0.0679) R2dE : 0.146 R2E : 0.374
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.589 (0.0411) R2dN8 : 0.074 R2N8 : 0.0259
σ : 0.358
deviance : 59.18
__
_____
C
peak time of C : 15.7
E
wheather : radiation
threshold : 46.91
memory length : 69
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.42 0.359 11.3 -1.3 1.72 -1.29 0.659 0.315 -0.599 15.7 44.64 76 -- --
58.44 0.356 11.3 -1.3 1.73 -1.34 0.504 -- -0.588 15.8 47.6 69 -- --
59.17 0.358 11.3 -1.29 1.75 -1.31 -- -0.0376 -0.586 15.7 47.04 69 -- --
59.18 0.358 11.3 -1.29 1.75 -1.31 -- -- -0.589 15.7 46.91 69 -- --
87.97 0.437 11.3 -1.33 -- -2.09 -- -0.0391 -0.622 -- 7.948 326 -- --
83.13 0.427 11.3 -1.27 2.42 -- 0.295 -- -0.521 14.7 -- -- -- --
83.43 0.428 11.3 -1.27 2.42 -- -- -- -0.52 14.7 -- -- -- --
87.97 0.437 11.3 -1.32 -- -2.09 -- -- -0.606 -- 8.077 326 -- --
102.2 0.471 11.3 -- 1.81 -1.42 -- -- -0.433 15.6 70.35 68 -- --
423.87 0.962 11.3 -1.37 -- -- -- -- -0.581 -- -- -- -- --
125.75 0.525 11.3 -- 2.44 -- -- -- -0.378 14.7 -- -- -- --
132.76 0.537 11.3 -- -- -2.15 -- -- -0.464 -- 10 326 -- --
473.39 1.02 11.3 -- -- -- -- -- -0.429 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.73 radiation 40.0 90 < th dose independent rect. 3 18
2 46.69 radiation 40.0 90 < th dose dependent rect. 3 18
4 47.81 radiation 40.0 270 < th dose dependent rect. 1 17
5 48.05 radiation 30.0 270 < th dose dependent rect. 1 10
11 48.23 radiation 20.0 270 < th dose dependent rect. 1 12
18 48.50 radiation 20.0 270 < th dose dependent rect. 1 14
32 49.10 radiation 40.0 90 < th dose dependent rect. 3 8
45 49.65 radiation 40.0 10 < th dose dependent rect. 4 17
46 49.71 radiation 20.0 90 < th dose independent rect. 3 8
55 49.87 radiation 10.0 270 < th dose independent rect. 1 18
67 50.27 radiation 10.0 270 < th dose independent rect. 1 8
106 50.98 precipitation 0.1 270 < th dose independent rect. 2 17
107 50.98 precipitation 0.1 270 < th dose dependent rect. 2 17
123 51.24 radiation 20.0 90 < th dose independent rect. 3 6
127 51.30 radiation 10.0 270 < th dose dependent sin 4 NA
130 51.37 radiation 10.0 270 < th dose independent rect. 1 12
145 51.51 radiation 10.0 270 < th dose independent rect. 1 15
167 51.75 precipitation 0.1 270 < th dose independent rect. 15 15
168 51.75 precipitation 0.1 270 < th dose dependent rect. 15 15
179 51.86 atmosphere 995.0 270 > th dose independent rect. 2 17
187 51.97 radiation 40.0 90 < th dose dependent rect. 3 10
188 52.00 precipitation 0.1 270 < th dose independent rect. 6 9
189 52.00 precipitation 0.1 270 < th dose dependent rect. 6 9
191 52.02 radiation 40.0 270 < th dose independent rect. 14 16
198 52.15 temperature 10.0 270 > th dose independent rect. 19 7
199 52.15 temperature 30.0 270 < th dose independent rect. 19 7
200 52.15 humidity 50.0 270 > th dose independent rect. 19 7
201 52.15 atmosphere 995.0 270 > th dose independent rect. 19 7
202 52.15 radiation 1.0 270 < th dose independent rect. 19 7
207 52.15 wind 9.0 270 < th dose independent rect. 6 9
208 52.15 temperature 10.0 270 > th dose independent rect. 2 17
209 52.15 atmosphere 1015.0 270 < th dose independent rect. 2 17
210 52.15 radiation 1.0 270 < th dose dependent rect. 19 7
219 52.18 wind 9.0 270 < th dose independent rect. 19 7
221 52.19 wind 9.0 90 < th dose dependent rect. 3 6
226 52.25 humidity 70.0 90 > th dose independent rect. 3 6
228 52.28 wind 9.0 270 < th dose independent rect. 15 15
233 52.33 temperature 10.0 270 > th dose independent rect. 6 9
234 52.33 atmosphere 1015.0 270 < th dose independent rect. 6 9
235 52.33 temperature 10.0 270 > th dose independent rect. 15 15
257 52.49 precipitation 0.1 90 < th dose independent rect. 3 6
258 52.49 precipitation 0.1 90 < th dose dependent rect. 3 6
268 52.58 wind 9.0 270 < th dose independent rect. 2 17
271 52.60 precipitation 0.1 270 < th dose independent rect. 19 7
272 52.60 precipitation 0.1 270 < th dose dependent rect. 19 7
275 52.65 precipitation 0.1 270 < th dose independent rect. 1 6
276 52.65 precipitation 0.1 270 < th dose dependent rect. 1 6
281 52.68 atmosphere 995.0 270 > th dose independent rect. 15 15
286 52.72 temperature 30.0 90 < th dose independent rect. 3 6
287 52.72 precipitation 0.1 90 < th dose independent rect. 21 6
288 52.72 precipitation 0.1 90 < th dose dependent rect. 21 6
291 52.74 humidity 50.0 90 > th dose dependent rect. 3 6
319 52.86 wind 9.0 90 < th dose independent rect. 21 6
324 52.88 temperature 10.0 90 > th dose independent rect. 21 6
325 52.88 temperature 30.0 90 < th dose independent rect. 21 6
326 52.88 humidity 50.0 90 > th dose independent rect. 21 6
329 52.88 atmosphere 995.0 90 > th dose independent rect. 21 6
330 52.88 radiation 1.0 90 < th dose independent rect. 21 6
337 52.88 radiation 1.0 90 < th dose dependent rect. 21 6
342 52.88 radiation 40.0 90 < th dose dependent rect. 3 12
360 53.01 wind 5.0 270 < th dose independent rect. 1 6
375 53.13 wind 9.0 90 < th dose independent rect. 9 18
380 53.18 radiation 40.0 90 < th dose dependent rect. 15 18
381 53.19 wind 7.0 90 < th dose independent rect. 3 6
387 53.21 wind 9.0 270 < th dose dependent rect. 1 6
392 53.25 temperature 10.0 90 > th dose independent rect. 3 6
395 53.25 atmosphere 995.0 90 > th dose independent rect. 3 6
396 53.25 atmosphere 1015.0 90 < th dose independent rect. 3 6
397 53.25 temperature 10.0 90 > th dose independent rect. 9 18
398 53.26 atmosphere 995.0 270 > th dose independent rect. 6 9
399 53.26 humidity 50.0 90 > th dose dependent rect. 21 6
409 53.33 radiation 40.0 270 < th dose independent rect. 11 8
423 53.45 precipitation 0.1 270 < th dose independent rect. 24 8
425 53.45 precipitation 0.1 270 < th dose dependent rect. 24 8
427 53.45 radiation 40.0 90 < th dose dependent rect. 13 22
428 53.46 humidity 70.0 270 > th dose independent rect. 1 6
449 53.57 temperature 10.0 270 > th dose independent rect. 1 6
451 53.57 temperature 30.0 270 < th dose independent rect. 1 6
452 53.57 humidity 50.0 270 > th dose independent rect. 1 6
454 53.57 atmosphere 995.0 270 > th dose independent rect. 1 6
455 53.57 atmosphere 1015.0 270 < th dose independent rect. 1 6
457 53.57 temperature 10.0 270 > th dose independent rect. 7 18
459 53.59 wind 9.0 270 < th dose independent rect. 7 18
476 53.77 temperature 10.0 270 > th dose dependent rect. 1 6
477 53.77 humidity 50.0 270 > th dose dependent rect. 19 6
478 53.78 precipitation 0.1 270 < th dose independent rect. 3 2
481 53.78 precipitation 0.1 270 < th dose dependent rect. 3 2
490 53.87 humidity 60.0 90 > th dose dependent rect. 3 8
506 53.92 radiation 40.0 90 < th dose dependent rect. 13 20
551 54.11 precipitation 0.1 90 < th dose independent rect. 9 18
552 54.11 precipitation 0.1 90 < th dose dependent rect. 9 18
561 54.16 radiation 1.0 270 > th dose independent rect. 6 9
573 54.26 wind 9.0 10 < th dose dependent rect. 3 6
590 54.33 precipitation 0.1 270 < th dose independent rect. 7 18
591 54.33 precipitation 0.1 270 < th dose dependent rect. 7 18
595 54.35 temperature 10.0 90 > th dose dependent rect. 3 5
603 54.38 atmosphere 1015.0 270 < th dose independent rect. 24 8
619 54.39 temperature 10.0 270 > th dose independent rect. 8 16
644 54.44 humidity 50.0 270 > th dose dependent rect. 1 6
653 54.49 radiation 40.0 90 < th dose dependent sin 2 NA
656 54.51 wind 9.0 270 < th dose dependent rect. 3 2
740 54.79 precipitation 0.1 10 < th dose independent rect. 3 6
747 54.79 precipitation 0.1 10 < th dose dependent rect. 3 6
770 54.86 wind 5.0 270 < th dose independent rect. 3 2
786 54.88 humidity 50.0 270 > th dose independent rect. 6 9
805 54.95 temperature 10.0 270 > th dose dependent rect. 3 2
871 55.13 radiation 40.0 90 < th dose dependent rect. 11 23
873 55.14 radiation 1.0 270 < th dose independent rect. 3 2
878 55.15 temperature 10.0 270 > th dose independent rect. 3 2
880 55.15 temperature 30.0 270 < th dose independent rect. 3 2
881 55.15 humidity 50.0 270 > th dose independent rect. 3 2
884 55.15 atmosphere 995.0 270 > th dose independent rect. 3 2
885 55.15 atmosphere 1010.0 270 < th dose independent rect. 3 2
891 55.15 temperature 10.0 270 > th dose independent rect. 5 22
892 55.15 radiation 40.0 270 < th dose dependent rect. 3 2
894 55.16 radiation 20.0 270 < th dose dependent rect. 3 2
915 55.19 precipitation 0.1 270 < th dose independent rect. 8 16
917 55.19 precipitation 0.1 270 < th dose dependent rect. 8 16
924 55.21 temperature 10.0 270 > th dose dependent rect. 15 15
934 55.25 temperature 10.0 10 > th dose dependent rect. 3 6
942 55.29 wind 1.0 270 > th dose independent rect. 19 7
949 55.31 wind 9.0 270 < th dose independent rect. 5 22
954 55.32 radiation 40.0 90 < th dose dependent rect. 23 23
958 55.34 humidity 50.0 270 > th dose dependent rect. 3 2
974 55.41 atmosphere 1015.0 270 < th dose independent rect. 15 15
994 55.49 humidity 60.0 90 > th dose dependent rect. 3 16