BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0668600 Os07g0668600|AK108315
(280 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0668600 Conserved hypothetical protein 476 e-134
Os05g0525900 Similar to Zing finger transcription factor PEI1 120 1e-27
Os03g0698800 Zinc finger, CCCH-type domain containing protein 118 6e-27
Os01g0738400 Similar to Zn-finger transcription factor 114 7e-26
Os07g0568300 Similar to ZF protein (Fragment) 114 1e-25
Os01g0192000 Similar to Zinc finger transcription factor 112 4e-25
Os12g0515500 Similar to Zn-finger transcription factor 110 9e-25
Os05g0195200 Zinc finger, CCCH-type domain containing protein 108 4e-24
Os05g0128200 Similar to Transposable element Mu1 sequence 105 4e-23
>Os07g0668600 Conserved hypothetical protein
Length = 280
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/280 (83%), Positives = 233/280 (83%)
Query: 1 MAMHHMHDVFAQTTSIIGHEEEEVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCP 60
MAMHHMHDVFAQTTSIIGHEEEEVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCP
Sbjct: 1 MAMHHMHDVFAQTTSIIGHEEEEVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCP 60
Query: 61 RSSSHDWTSCPYAHKGEXXXXXXXXXXXXXXVSCPDYRPREAAPGAVPSCAHGLRCRYAH 120
RSSSHDWTSCPYAHKGE VSCPDYRPREAAPGAVPSCAHGLRCRYAH
Sbjct: 61 RSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPREAAPGAVPSCAHGLRCRYAH 120
Query: 121 GVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAILTXXXXXXXXXX 180
GVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAILT
Sbjct: 121 GVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAILTPMPMPMPMSI 180
Query: 181 XXRTPDADHHPRVSAMRDQLDLIEEAMRNRLRLYXXXXXXXXXXXXXXXXXXXXXIPVST 240
RTPDADHHPRVSAMRDQLDLIEEAMRNRLRLY IPVST
Sbjct: 181 PMRTPDADHHPRVSAMRDQLDLIEEAMRNRLRLYSNANANANVGSSSATAVATTTIPVST 240
Query: 241 LANGEGSTGKRCGCRRCVEEEDALLNGYPHYDLIMDLVDE 280
LANGEGSTGKRCGCRRCVEEEDALLNGYPHYDLIMDLVDE
Sbjct: 241 LANGEGSTGKRCGCRRCVEEEDALLNGYPHYDLIMDLVDE 280
>Os05g0525900 Similar to Zing finger transcription factor PEI1
Length = 255
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 76/122 (62%), Gaps = 10/122 (8%)
Query: 49 FWIHVYKVQRCPRSSSHDWTSCPYAHKGEXXXXXXXXXXXXXXVSCPDYRPREAAPGAVP 108
F ++ +KV+RC R+ SHDWT+CPYAH GE CPD+R R PGA
Sbjct: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRR---PGA-- 113
Query: 109 SCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELR-----DDPNS 163
+C G C +AHG FELWLHPSR+RTR C AG C RR+CFFAH+A ELR D P S
Sbjct: 114 ACPRGSTCPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGELRAGSKEDSPLS 173
Query: 164 IA 165
++
Sbjct: 174 LS 175
>Os03g0698800 Zinc finger, CCCH-type domain containing protein
Length = 764
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 6 MHDVFAQTTSIIGHEEEEVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCPRSSSH 65
M FA ++ E++E +DP+ + ++AS ++F ++ +K++ C R+ SH
Sbjct: 245 MTTKFADLPRVVTSEKKEYPVDPS----LPDIKNSIYAS--DEFRMYSFKIRPCSRAYSH 298
Query: 66 DWTSCPYAHKGEXXXXXXXXXXXXXXVSCPDYRPREAAPGAVPSCAHGLRCRYAHGVFEL 125
DWT CP+ H GE V CPD+R C G C YAHGVFE
Sbjct: 299 DWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGV--------CRRGDMCEYAHGVFEC 350
Query: 126 WLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAI 168
WLHP+++RTR+C GT C RR+CFFAH+ ELR S SA+
Sbjct: 351 WLHPAQYRTRLCKDGTSCNRRVCFFAHTTDELRPLYVSTGSAV 393
>Os01g0738400 Similar to Zn-finger transcription factor
Length = 225
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 47 EDFWIHVYKVQRCPRSSSHDWTSCPYAHKGEXXXXXXXXXXXXXXVSCPDYRPREAAPGA 106
EDF ++ +KV+RCPRS +H+WTSCPYAH GE CPD+R A
Sbjct: 43 EDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRV-----AA 97
Query: 107 VPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIAS 166
+C G C +AHG FE WLHPSR+RTR C +G C R +CFFAH+ ELR + A+
Sbjct: 98 RAACPRGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAA 157
Query: 167 AI 168
A
Sbjct: 158 AT 159
>Os07g0568300 Similar to ZF protein (Fragment)
Length = 657
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Query: 46 SEDFWIHVYKVQRCPRSSSHDWTSCPYAHKGEXXXXXXXXXXXXXXVSCPDYRPREAAPG 105
S++F + +KV+ C R+ SHDWT CP+ H GE V CP++R PG
Sbjct: 232 SDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFR----RPG 287
Query: 106 AVPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIA 165
PS G C ++HGVFE WLHPS++RTR+C G C RRICFFAH ELR P++
Sbjct: 288 GCPS---GDSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICFFAHDEDELRHVPHNSG 344
Query: 166 SAILT 170
+ +L+
Sbjct: 345 AGLLS 349
>Os01g0192000 Similar to Zinc finger transcription factor
Length = 386
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 73/129 (56%), Gaps = 14/129 (10%)
Query: 47 EDFWIHVYKVQRCPRSSSHDWTSCPYAHKGEXXXXXXXXXXXXXXVSCPDYRPREAAPGA 106
++F ++ +KV+RC R SHDWT CP+AH GE +CPD+R
Sbjct: 75 DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKG------ 128
Query: 107 VPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELR------DD 160
C G C YAHGVFE WLHP+R+RT+ C GT C RR+CFFAH+ +LR
Sbjct: 129 --GCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQSS 186
Query: 161 PNSIASAIL 169
P S+AS+ L
Sbjct: 187 PRSVASSPL 195
>Os12g0515500 Similar to Zn-finger transcription factor
Length = 619
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 86/157 (54%), Gaps = 20/157 (12%)
Query: 15 SIIGHEEE---EVTIDPTKWGAWAHRGHRLWASMSEDFWIHVYKVQRCPRSSSHDWTSCP 71
S++G +E + ++ K GA+A S+DF ++ +KV+ C R+ SHDWT CP
Sbjct: 147 SLLGARKEWPPDPSLPDIKNGAYA----------SDDFRMYSFKVRACSRAYSHDWTECP 196
Query: 72 YAHKGEXXXXXXXXXXXXXXVSCPDYRPREAAPGAVPSCAHGLRCRYAHGVFELWLHPSR 131
+ H GE V CP+++ GA C G C YAHGVFE WLHP++
Sbjct: 197 FVHPGENARRRDPRKYHYSCVPCPEFKK-----GA--GCRRGDMCEYAHGVFESWLHPAQ 249
Query: 132 FRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIASAI 168
+RTR+C G C RR+CFFAH+ ELR S SA+
Sbjct: 250 YRTRLCKDGVGCARRVCFFAHTPDELRPLYVSTGSAV 286
>Os05g0195200 Zinc finger, CCCH-type domain containing protein
Length = 402
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 47 EDFWIHVYKVQRCPRSSSHDWTSCPYAHKGEXXXXXXXXXXXXXXVSCPDYRPREAAPGA 106
++F ++ +KV+RC R SHDWT CP+AH GE +CPD+R
Sbjct: 76 DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKG------ 129
Query: 107 VPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNS 163
C G C +AHGVFE WLHP+R+RT+ C GT C RR+CFFAH+ +LR P S
Sbjct: 130 --GCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPS 184
>Os05g0128200 Similar to Transposable element Mu1 sequence
Length = 380
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 46 SEDFWIHVYKVQRCPRSSSHDWTSCPYAHKGEXXXXXXXXXXXXXXVSCPDYRPREAAPG 105
+++F ++ +KV+ C R+ SHDWT CP+ H GE V CP++R
Sbjct: 210 TDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGG---- 265
Query: 106 AVPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNSIA 165
SC G C YAHGVFE WLHP+++RTR+C C RRICFFAH ELR S
Sbjct: 266 ---SCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDELRAVNPSAV 322
Query: 166 SAI 168
S +
Sbjct: 323 SVV 325
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,516,632
Number of extensions: 341787
Number of successful extensions: 993
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 981
Number of HSP's successfully gapped: 9
Length of query: 280
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 180
Effective length of database: 11,814,401
Effective search space: 2126592180
Effective search space used: 2126592180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)