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Os05g0525900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zing finger transcription factor PEI1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.52 (0.0648) R2 : 0.722
β1 : -0.827 (0.237) R2dD : 0.00734 R2D : 0.0108
β2 : 3.45 (0.179) R2dC : 0.273 R2C : 0.471
β3 : 2.97 (0.166) R2dE : 0.238 R2E : 0.441
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0217 (0.14) R2dN8 : 1.39e-05 R2N8 : -0.00116
σ : 1.21
deviance : 673.16
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C
peak time of C : 20
E
wheather : humidity
threshold : 67.97
memory length : 785
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.9
open length of G : 5.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
669.4 1.22 9.51 -0.687 3.53 2.61 1.8 -1.85 0.0254 20.5 68.67 775 15.3 4.37
671.26 1.21 9.52 -0.784 3.44 3.01 1.15 -- 0.0118 20 68 783 15 5.04
670.42 1.21 9.52 -0.8 3.5 2.77 -- -0.824 0.0195 20.2 68 787 15 4.77
673.16 1.21 9.52 -0.827 3.45 2.97 -- -- 0.0217 20 67.97 785 14.9 5.03
970.38 1.45 9.43 -0.659 -- 4.26 -- -0.166 -0.0408 -- 58 645 14.5 4.87
857.04 1.37 9.49 -1.02 5.06 -- -0.124 -- 0.344 21.7 -- -- -- --
857.09 1.37 9.49 -1.02 5.06 -- -- -- 0.344 21.7 -- -- -- --
866.12 1.37 9.34 -0.719 -- 4.26 -- -- 0.376 -- 43 692 13 6.04
690.14 1.22 9.5 -- 3.47 2.99 -- -- 0.113 20 67.57 787 14.9 5.08
2380.71 2.28 9.35 -0.969 -- -- -- -- 0.339 -- -- -- -- --
884.32 1.39 9.46 -- 5.06 -- -- -- 0.458 21.7 -- -- -- --
883.24 1.38 9.31 -- -- 4.4 -- -- 0.505 -- 42 684 13.2 6.16
2405.46 2.29 9.33 -- -- -- -- -- 0.446 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 690.37 humidity 70 720 > th dose independent rect. 16 4
4 696.68 humidity 70 720 > th dose independent rect. 16 11
12 703.97 humidity 50 720 > th dose dependent rect. 17 3
13 704.38 temperature 15 30 > th dose dependent rect. 5 13
14 704.92 humidity 70 720 > th dose independent rect. 16 19
25 709.45 radiation 10 1440 > th dose independent rect. 17 23
26 709.52 radiation 10 1440 > th dose independent rect. 17 21
30 709.92 radiation 10 1440 > th dose independent rect. 8 23
32 710.31 radiation 10 1440 > th dose independent rect. 15 23
36 711.00 radiation 10 1440 > th dose independent rect. 13 23
44 711.99 radiation 10 1440 > th dose independent no NA NA
45 711.99 radiation 10 1440 > th dose independent rect. 5 13
124 712.15 humidity 70 720 > th dose independent rect. 8 19
126 712.80 radiation 10 1440 > th dose independent sin 2 NA
127 712.85 radiation 10 1440 > th dose independent rect. 11 23
130 712.98 humidity 50 720 > th dose dependent rect. 8 19
137 713.56 radiation 10 720 < th dose independent rect. 15 12
148 714.78 radiation 10 1440 > th dose independent rect. 8 10
160 714.88 temperature 30 720 < th dose independent rect. 17 10
258 718.67 temperature 30 720 < th dose independent rect. 17 2
269 719.79 temperature 30 90 < th dose dependent rect. 7 13
292 720.55 radiation 10 720 < th dose independent rect. 15 4
298 720.93 temperature 20 30 > th dose independent rect. 18 11
313 722.67 humidity 50 720 > th dose dependent rect. 15 12
316 722.83 radiation 10 720 < th dose dependent rect. 17 10
317 722.85 radiation 10 1440 > th dose independent rect. 8 5
350 723.92 humidity 70 1440 > th dose independent rect. 11 10
352 723.97 humidity 70 1440 > th dose independent sin 17 NA
353 723.99 humidity 70 1440 > th dose independent rect. 11 13
381 724.93 humidity 60 1440 > th dose dependent rect. 11 2
383 725.00 humidity 70 1440 > th dose independent rect. 9 12
388 725.05 humidity 70 1440 > th dose independent rect. 9 15
392 725.09 radiation 10 720 < th dose dependent rect. 8 19
397 725.16 humidity 70 1440 > th dose independent rect. 11 23
443 725.83 temperature 30 30 < th dose dependent rect. 9 11
448 725.88 humidity 80 1440 < th dose dependent rect. 18 20
488 727.01 radiation 10 720 < th dose dependent rect. 14 13
505 727.33 radiation 10 1440 < th dose dependent rect. 7 11
535 727.74 humidity 70 1440 > th dose independent rect. 2 19
541 727.74 radiation 10 1440 < th dose dependent rect. 7 14
547 727.77 temperature 10 270 > th dose dependent rect. 4 11
571 727.85 radiation 10 1440 < th dose dependent rect. 7 17
576 727.87 humidity 70 1440 > th dose independent rect. 23 22
595 727.94 humidity 70 1440 > th dose independent no NA NA
625 728.14 humidity 60 90 > th dose dependent rect. 9 11
645 728.54 humidity 70 1440 < th dose independent rect. 11 9
663 728.72 radiation 10 1440 < th dose dependent sin 22 NA
687 729.25 humidity 80 1440 < th dose independent rect. 7 7
715 729.87 humidity 70 1440 < th dose independent sin 19 NA
722 730.00 radiation 10 720 < th dose dependent rect. 14 5
790 730.95 humidity 70 1440 < th dose independent rect. 16 22
800 731.19 radiation 10 1440 > th dose independent sin 13 NA
855 731.90 humidity 70 90 > th dose dependent rect. 7 13
919 732.45 radiation 20 90 < th dose dependent rect. 6 23
951 732.73 humidity 70 1440 < th dose independent rect. 19 23
962 732.86 humidity 70 1440 < th dose independent no NA NA