BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0525900 Os05g0525900|AK108249
(255 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0525900 Similar to Zing finger transcription factor PEI1 444 e-125
Os01g0738400 Similar to Zn-finger transcription factor 193 1e-49
Os01g0192000 Similar to Zinc finger transcription factor 140 8e-34
Os05g0195200 Zinc finger, CCCH-type domain containing protein 140 9e-34
Os03g0698800 Zinc finger, CCCH-type domain containing protein 130 1e-30
Os07g0568300 Similar to ZF protein (Fragment) 130 1e-30
Os12g0515500 Similar to Zn-finger transcription factor 129 2e-30
Os05g0128200 Similar to Transposable element Mu1 sequence 127 8e-30
Os07g0668600 Conserved hypothetical protein 104 6e-23
>Os05g0525900 Similar to Zing finger transcription factor PEI1
Length = 255
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/255 (89%), Positives = 228/255 (89%)
Query: 1 MASREHLLLDPAALAVSWADPAAVEIPPELLAALGEYLSARRSDGXXXXXXXXXXXXXFM 60
MASREHLLLDPAALAVSWADPAAVEIPPELLAALGEYLSARRSDG FM
Sbjct: 1 MASREHLLLDPAALAVSWADPAAVEIPPELLAALGEYLSARRSDGEAEADAEAEADDEFM 60
Query: 61 MYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRGST 120
MYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRGST
Sbjct: 61 MYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRGST 120
Query: 121 CPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRAGSKEDSPLSLSPKSTL 180
CPFAHGTFELWLHPSRYRT FFAHTAGELRAGSKEDSPLSLSPKSTL
Sbjct: 121 CPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGELRAGSKEDSPLSLSPKSTL 180
Query: 181 ASLWESPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGLRKVRPSASSVTPVLPPVT 240
ASLWESPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGLRKVRPSASSVTPVLPPVT
Sbjct: 181 ASLWESPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGLRKVRPSASSVTPVLPPVT 240
Query: 241 DEDGPDFGWVSELVM 255
DEDGPDFGWVSELVM
Sbjct: 241 DEDGPDFGWVSELVM 255
>Os01g0738400 Similar to Zn-finger transcription factor
Length = 225
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/197 (50%), Positives = 124/197 (62%), Gaps = 16/197 (8%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
FMMYEFKVRRC R+R+H+WT+CPYAHPGEAARRRDP V YTGEPCPDFR AACPRG
Sbjct: 45 FMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACPRG 104
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRAGSKEDSPLSLSPKS 178
S CPFAHGTFE WLHPSRYRT FFAH ELR + + + SP+S
Sbjct: 105 SGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSPRS 164
Query: 179 TLASLWESPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGLRKVRPSASSVTPVLPP 238
+ +SPP SP+ +M++++ AM+++ RK S + T +L
Sbjct: 165 PFTTSEDSPPPSPM----------------DMKQIVLAMQQMDARKATRSVAPKTDMLQQ 208
Query: 239 VTDEDGPDFGWVSELVM 255
+ED P+ GWVS+L+M
Sbjct: 209 ELEEDAPELGWVSDLLM 225
>Os01g0192000 Similar to Zinc finger transcription factor
Length = 386
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MYEFKVRRCAR RSHDWT CP+AHPGE ARRRDPR+ Y+G CPDFR+ C RG
Sbjct: 77 FRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRK---GGCKRG 133
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRA-GSKEDSPLSLSPK 177
C +AHG FE WLHP+RYRT FFAHT +LR +++ SP S++
Sbjct: 134 DACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQSSPRSVA-S 192
Query: 178 STLASLWESPPV 189
S LA ++ P+
Sbjct: 193 SPLAESYDGSPL 204
>Os05g0195200 Zinc finger, CCCH-type domain containing protein
Length = 402
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MYEFKVRRCAR RSHDWT CP+AHPGE ARRRDPRR Y+G CPDFR+ C RG
Sbjct: 78 FRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRK---GGCKRG 134
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRAGSKEDSPLSLSPK 177
C FAHG FE WLHP+RYRT FFAHT +LR S SP+
Sbjct: 135 DACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSPR 193
>Os03g0698800 Zinc finger, CCCH-type domain containing protein
Length = 764
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MY FK+R C+RA SHDWT CP+ HPGE ARRRDPR+ Y+ PCPDFR+ C RG
Sbjct: 282 FRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRK---GVCRRG 338
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELR 163
C +AHG FE WLHP++YRT FFAHT ELR
Sbjct: 339 DMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTTDELR 383
>Os07g0568300 Similar to ZF protein (Fragment)
Length = 657
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F M+ FKVR C+RA SHDWT CP+ HPGE ARRRDPR+ YT PCP+F RRPG CP G
Sbjct: 235 FRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNF-RRPG-GCPSG 292
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRAGSKEDSPLSLSPKS 178
+C F+HG FE WLHPS+YRT FFAH ELR LSP++
Sbjct: 293 DSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICFFAHDEDELRHVPHNSGAGLLSPRA 352
Query: 179 T 179
+
Sbjct: 353 S 353
>Os12g0515500 Similar to Zn-finger transcription factor
Length = 619
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MY FKVR C+RA SHDWT CP+ HPGE ARRRDPR+ Y+ PCP+F++ GA C RG
Sbjct: 174 FRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKK--GAGCRRG 231
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELR 163
C +AHG FE WLHP++YRT FFAHT ELR
Sbjct: 232 DMCEYAHGVFESWLHPAQYRTRLCKDGVGCARRVCFFAHTPDELR 276
>Os05g0128200 Similar to Transposable element Mu1 sequence
Length = 380
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 70/106 (66%), Gaps = 2/106 (1%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MY FKV+ C+RA SHDWT CP+ HPGE ARRRDPRR +Y+ PCP+FR+ G +C +G
Sbjct: 213 FRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRK--GGSCRKG 270
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRA 164
C +AHG FE WLHP++YRT FFAH ELRA
Sbjct: 271 DACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDELRA 316
>Os07g0668600 Conserved hypothetical protein
Length = 280
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 76/122 (62%), Gaps = 10/122 (8%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRR---PGA-- 113
F ++ +KV+RC R+ SHDWT+CPYAH GE ARRRD RR AY CPD+R R PGA
Sbjct: 49 FWIHVYKVQRCPRSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPREAAPGAVP 108
Query: 114 ACPRGSTCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRAGSKEDSPLS 173
+C G C +AHG FELWLHPSR+RT FFAH+A ELR D P S
Sbjct: 109 SCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELR-----DDPNS 163
Query: 174 LS 175
++
Sbjct: 164 IA 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,654,341
Number of extensions: 397825
Number of successful extensions: 1163
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 9
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)