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Os03g0698800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCCH-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0171) R2 : 0.396
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.743 (0.043) R2dC : 0.395 R2C : 0.393
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0486 (0.0359) R2dN8 : 0.00314 R2N8 : 0.00069
σ : 0.322
deviance : 47.38
__
_____
C
peak time of C : 3.47
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.53 0.26 10.1 1.11 0.731 -0.0292 -0.507 2.18 0.152 3.49 0.6012 11166 -- --
34.76 0.275 10.2 0.752 0.765 0.373 -0.321 -- -0.0715 3.66 19.76 24276 -- --
30.59 0.258 10.1 1.1 0.738 -0.0152 -- 2.24 0.152 3.45 0.55 10728 -- --
35.19 0.276 10.2 0.746 0.762 0.371 -- -- -0.0597 3.55 19.98 23616 -- --
54.52 0.344 10.1 1.06 -- -0.663 -- 1.32 0.228 -- 1.14 10606 -- --
38.04 0.289 10.1 0.57 0.735 -- -0.431 -- 0.013 3.54 -- -- -- --
38.61 0.291 10.1 0.577 0.731 -- -- -- 0.0156 3.47 -- -- -- --
56.6 0.35 10.1 1.1 -- -0.882 -- -- 0.226 -- 0.831 10640 -- --
45.4 0.314 10.2 -- 0.694 0.165 -- -- -0.0754 3.54 40.01 21408 -- --
68.56 0.387 10.1 0.608 -- -- -- -- 0.035 -- -- -- -- --
47.38 0.322 10.2 -- 0.743 -- -- -- -0.0486 3.47 -- -- -- --
68.95 0.387 10.1 -- -- -0.855 -- -- 0.141 -- 1.41 9170 -- --
78.31 0.413 10.2 -- -- -- -- -- -0.0324 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.05 wind 5.0 43200 > th dose dependent rect. 21 6
3 30.09 wind 5.0 43200 > th dose independent rect. 21 7
4 30.10 wind 5.0 43200 > th dose dependent rect. 20 10
5 30.11 wind 7.0 43200 < th dose independent rect. 20 10
6 30.11 humidity 90.0 14400 > th dose independent rect. 23 10
9 30.13 humidity 90.0 43200 > th dose dependent rect. 10 1
12 30.14 radiation 1.0 43200 < th dose dependent rect. 6 1
15 30.15 wind 5.0 43200 < th dose independent rect. 21 7
19 30.16 humidity 90.0 14400 > th dose independent rect. 20 10
21 30.16 wind 7.0 43200 < th dose independent rect. 20 13
24 30.16 wind 5.0 43200 > th dose dependent rect. 21 12
40 30.22 wind 7.0 43200 > th dose independent rect. 20 13
44 30.23 radiation 1.0 43200 < th dose dependent rect. 15 2
47 30.24 wind 7.0 43200 < th dose independent rect. 21 4
54 30.25 humidity 90.0 43200 > th dose independent rect. 10 3
65 30.27 wind 7.0 43200 > th dose independent rect. 21 4
83 30.32 wind 1.0 43200 > th dose independent rect. 2 1
84 30.32 humidity 90.0 14400 > th dose independent rect. 23 1
85 30.32 radiation 1.0 43200 < th dose independent rect. 6 9
92 30.32 radiation 1.0 43200 < th dose dependent rect. 6 11
95 30.33 radiation 1.0 43200 > th dose independent rect. 6 9
98 30.33 humidity 90.0 43200 > th dose dependent rect. 10 3
111 30.36 wind 7.0 43200 < th dose independent sin 9 NA
114 30.36 radiation 1.0 43200 < th dose independent rect. 8 9
117 30.36 wind 5.0 43200 > th dose dependent sin 9 NA
119 30.37 wind 7.0 43200 > th dose independent sin 9 NA
120 30.37 humidity 90.0 43200 > th dose independent rect. 10 1
124 30.37 radiation 1.0 43200 > th dose independent rect. 8 9
130 30.38 temperature 20.0 43200 > th dose independent rect. 6 3
139 30.39 temperature 20.0 43200 < th dose independent rect. 6 3
143 30.39 radiation 1.0 43200 < th dose dependent rect. 23 6
153 30.40 radiation 1.0 43200 < th dose dependent rect. 20 9
155 30.41 temperature 20.0 43200 > th dose independent rect. 7 1
161 30.41 radiation 1.0 43200 < th dose dependent rect. 4 1
164 30.42 humidity 90.0 43200 < th dose independent rect. 12 1
173 30.42 wind 5.0 43200 > th dose independent rect. 22 16
176 30.43 temperature 20.0 43200 < th dose independent rect. 8 1
186 30.43 temperature 20.0 43200 > th dose independent rect. 6 21
195 30.44 humidity 90.0 14400 > th dose independent sin 9 NA
207 30.44 humidity 90.0 14400 > th dose dependent rect. 5 1
210 30.45 wind 1.0 43200 < th dose independent rect. 2 1
212 30.45 humidity 90.0 43200 > th dose independent rect. 12 1
215 30.45 temperature 20.0 43200 > th dose independent rect. 2 20
219 30.45 temperature 20.0 43200 < th dose independent rect. 6 21
241 30.46 temperature 20.0 43200 < th dose independent rect. 2 21
278 30.48 temperature 20.0 43200 > th dose independent no NA NA
307 30.48 temperature 20.0 43200 > th dose independent rect. 12 23
313 30.48 temperature 20.0 43200 > th dose independent rect. 19 23
321 30.48 temperature 20.0 43200 < th dose independent rect. 20 23
326 30.49 temperature 20.0 43200 < th dose independent no NA NA
331 30.49 temperature 20.0 43200 > th dose independent rect. 12 15
337 30.49 temperature 20.0 43200 < th dose independent rect. 11 17
350 30.49 temperature 20.0 43200 > th dose independent rect. 15 21
352 30.49 temperature 20.0 43200 < th dose independent rect. 16 21
362 30.49 temperature 20.0 43200 < th dose independent rect. 13 22
374 30.49 temperature 20.0 43200 < th dose independent rect. 11 23
388 30.50 temperature 20.0 43200 > th dose independent sin 16 NA
390 30.50 temperature 20.0 43200 > th dose independent sin 1 NA
392 30.50 temperature 20.0 43200 < th dose independent sin 2 NA
401 30.50 wind 5.0 43200 < th dose independent rect. 22 16
406 30.50 temperature 20.0 43200 < th dose independent rect. 2 17
458 30.51 temperature 20.0 43200 < th dose independent sin 16 NA
474 30.51 temperature 20.0 43200 < th dose independent rect. 14 14
522 30.52 radiation 30.0 43200 < th dose independent rect. 5 2
592 30.53 temperature 20.0 43200 < th dose independent rect. 2 14
629 30.53 precipitation 0.1 43200 > th dose dependent rect. 6 7
633 30.54 wind 9.0 43200 > th dose independent rect. 22 1
634 30.54 wind 9.0 43200 < th dose independent rect. 22 1
636 30.54 precipitation 0.1 43200 > th dose independent rect. 6 7
646 30.54 temperature 20.0 43200 < th dose independent rect. 16 10
654 30.54 temperature 20.0 43200 < th dose independent rect. 3 12
693 30.54 temperature 25.0 43200 < th dose dependent rect. 10 1
700 30.55 temperature 20.0 43200 < th dose independent rect. 17 8
724 30.55 radiation 30.0 43200 < th dose independent rect. 17 14
775 30.56 radiation 30.0 43200 < th dose independent rect. 19 12
804 30.56 radiation 1.0 14400 < th dose dependent rect. 18 18
808 30.57 radiation 1.0 14400 > th dose independent rect. 18 1
854 30.58 temperature 20.0 43200 > th dose independent rect. 17 1
860 30.58 precipitation 0.1 43200 > th dose independent rect. 6 5
861 30.58 precipitation 0.1 43200 < th dose independent rect. 6 5
899 30.58 precipitation 0.1 43200 > th dose dependent rect. 6 5
900 30.58 precipitation 0.1 43200 < th dose dependent rect. 6 5
943 30.59 wind 5.0 43200 > th dose dependent rect. 1 9
948 30.60 temperature 20.0 43200 < th dose independent rect. 22 1
955 30.60 precipitation 0.1 43200 < th dose independent rect. 6 7
986 30.60 precipitation 0.1 43200 < th dose dependent rect. 6 7