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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0738400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zn-finger transcription factor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0206) R2 : 0.0017
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0383 (0.0434) R2dN8 : 0.0022 R2N8 : 0.0017
σ : 0.388
deviance : 69.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.16 0.379 3.11 0.242 0.155 -0.173 -0.182 -1.13 0.0132 5.77 79.83 5908 -- --
66.67 0.38 3.11 0.145 0.181 -0.205 -0.16 -- -0.0479 5.92 85 6349 -- --
65.24 0.376 3.11 0.243 0.154 -0.171 -- -1.15 0.0156 5.87 79.76 5914 -- --
66.73 0.38 3.11 0.133 0.182 -0.232 -- -- -0.061 6.06 86 6349 -- --
66.41 0.38 3.11 0.251 -- -0.179 -- -1.1 0.0151 -- 79.95 5691 -- --
67.64 0.386 3.09 0.0881 0.154 -- -0.21 -- 0.044 5.72 -- -- -- --
67.75 0.385 3.09 0.0871 0.153 -- -- -- 0.0449 5.86 -- -- -- --
67.98 0.384 3.11 0.132 -- -0.208 -- -- -0.0409 -- 85 6979 -- --
67.13 0.382 3.11 -- 0.175 -0.212 -- -- -0.0623 6.05 85 6364 -- --
68.97 0.388 3.09 0.0917 -- -- -- -- 0.0485 -- -- -- -- --
67.95 0.386 3.09 -- 0.155 -- -- -- 0.0352 5.84 -- -- -- --
68.34 0.385 3.12 -- -- -0.222 -- -- -0.0709 -- 85 5622 -- --
69.19 0.388 3.09 -- -- -- -- -- 0.0383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.24 wind 9.0 1440 < th dose independent rect. 23 1
2 59.24 temperature 10.0 1440 > th dose independent rect. 23 1
5 59.24 temperature 30.0 1440 < th dose independent rect. 23 1
9 59.24 humidity 50.0 1440 > th dose independent rect. 23 1
19 59.24 atmosphere 995.0 1440 > th dose independent rect. 23 1
20 59.24 radiation 1.0 1440 < th dose independent rect. 23 1
40 59.24 temperature 10.0 1440 > th dose independent rect. 24 23
43 59.24 radiation 1.0 1440 < th dose dependent rect. 23 1
48 59.27 humidity 90.0 30 < th dose independent rect. 22 1
49 59.31 temperature 20.0 30 > th dose dependent rect. 22 1
50 59.31 atmosphere 1005.0 30 > th dose dependent rect. 22 1
51 59.32 temperature 25.0 30 > th dose independent rect. 22 1
56 59.39 atmosphere 1005.0 30 > th dose independent rect. 22 1
58 59.41 wind 1.0 30 > th dose independent rect. 22 1
60 59.42 precipitation 0.1 30 < th dose independent rect. 22 1
61 59.42 precipitation 0.1 30 < th dose dependent rect. 22 1
62 59.44 wind 7.0 30 < th dose dependent rect. 22 1
64 59.45 wind 3.0 30 < th dose independent rect. 22 1
68 59.45 temperature 10.0 30 > th dose independent rect. 22 1
70 59.45 temperature 30.0 30 < th dose independent rect. 22 1
71 59.45 humidity 50.0 30 > th dose independent rect. 22 1
74 59.45 atmosphere 995.0 30 > th dose independent rect. 22 1
75 59.45 atmosphere 1010.0 30 < th dose independent rect. 22 1
77 59.45 radiation 1.0 30 < th dose independent rect. 22 1
82 59.45 temperature 10.0 30 > th dose independent rect. 23 23
83 59.45 radiation 1.0 30 < th dose dependent rect. 22 1
92 59.48 humidity 90.0 30 < th dose dependent rect. 22 1
93 59.52 humidity 50.0 30 > th dose dependent rect. 22 1
97 59.70 wind 1.0 30 > th dose dependent rect. 22 1
98 59.74 atmosphere 1015.0 30 < th dose dependent rect. 22 1
104 60.02 temperature 30.0 30 < th dose dependent rect. 22 1
107 60.26 wind 9.0 30 < th dose independent rect. 23 23
163 62.58 atmosphere 1005.0 10 > th dose dependent rect. 2 4
172 63.10 temperature 25.0 270 > th dose independent rect. 1 1
181 63.53 temperature 25.0 90 > th dose independent rect. 1 4
184 63.74 temperature 25.0 270 > th dose dependent rect. 1 1
188 63.79 atmosphere 995.0 30 > th dose independent rect. 23 23
190 63.83 humidity 90.0 270 < th dose independent rect. 1 4
191 63.88 temperature 25.0 90 > th dose dependent rect. 1 4
197 63.97 radiation 40.0 720 < th dose independent rect. 15 8
198 63.98 temperature 10.0 720 > th dose independent rect. 15 8
199 63.98 temperature 10.0 720 > th dose independent rect. 23 16
205 64.06 temperature 10.0 720 > th dose independent rect. 3 8
206 64.06 atmosphere 995.0 720 > th dose independent rect. 3 8
207 64.06 temperature 10.0 720 > th dose independent rect. 11 16
210 64.12 wind 9.0 720 < th dose independent rect. 3 8
213 64.16 atmosphere 1015.0 720 < th dose independent rect. 3 8
223 64.49 humidity 90.0 10 < th dose independent rect. 2 4
229 64.53 atmosphere 995.0 720 > th dose independent rect. 23 16
232 64.55 temperature 25.0 30 > th dose independent rect. 4 1
240 64.68 wind 9.0 720 < th dose independent rect. 15 8
242 64.71 precipitation 0.1 720 < th dose independent rect. 15 8
243 64.71 precipitation 0.1 720 < th dose dependent rect. 15 8
244 64.72 temperature 25.0 90 > th dose dependent rect. 4 1
246 64.76 humidity 90.0 10 < th dose independent rect. 4 1
253 64.80 humidity 50.0 720 > th dose independent rect. 3 8
254 64.80 wind 1.0 30 < th dose dependent rect. 2 1
256 64.82 temperature 30.0 14400 > th dose independent rect. 11 1
257 64.84 wind 1.0 10 < th dose independent rect. 2 1
258 64.85 temperature 30.0 14400 < th dose independent rect. 11 1
260 64.86 temperature 30.0 14400 > th dose independent rect. 11 5
264 64.87 temperature 30.0 14400 < th dose independent rect. 11 5
272 64.89 temperature 30.0 14400 < th dose independent rect. 14 1
274 64.89 temperature 30.0 14400 < th dose independent rect. 14 4
296 64.89 temperature 30.0 14400 < th dose independent rect. 14 17
309 64.90 temperature 30.0 14400 > th dose independent rect. 14 4
326 64.90 precipitation 0.1 720 < th dose independent rect. 11 16
332 64.90 precipitation 0.1 720 < th dose dependent rect. 11 16
376 64.92 temperature 30.0 14400 > th dose independent sin 16 NA
380 64.92 temperature 30.0 14400 < th dose independent sin 15 NA
393 64.92 atmosphere 1005.0 10 > th dose dependent rect. 2 1
394 64.92 atmosphere 1015.0 30 < th dose dependent rect. 2 1
400 64.93 temperature 30.0 14400 > th dose independent rect. 14 2
423 64.93 temperature 30.0 14400 < th dose independent rect. 14 22
433 64.94 temperature 25.0 30 < th dose independent rect. 2 1
528 64.94 temperature 30.0 14400 > th dose independent rect. 14 22
535 64.94 temperature 30.0 14400 > th dose dependent rect. 15 1
621 64.95 temperature 30.0 14400 < th dose independent rect. 3 21
638 64.95 temperature 30.0 30 < th dose dependent rect. 2 1
641 64.96 temperature 30.0 14400 > th dose independent no NA NA
644 64.96 temperature 30.0 14400 < th dose independent no NA NA
649 64.96 temperature 10.0 30 > th dose independent rect. 2 1
654 64.96 humidity 50.0 30 > th dose independent rect. 2 1
657 64.96 atmosphere 995.0 30 > th dose independent rect. 2 1
658 64.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
660 64.96 radiation 1.0 30 < th dose independent rect. 2 1
665 64.96 precipitation 0.1 30 < th dose independent rect. 2 1
838 64.96 temperature 10.0 30 > th dose independent rect. 3 23
867 64.96 wind 1.0 30 > th dose dependent rect. 4 1
869 64.96 humidity 50.0 30 > th dose dependent rect. 2 1
873 64.96 radiation 1.0 30 < th dose dependent rect. 2 1
878 64.96 precipitation 0.1 30 < th dose dependent rect. 2 1
891 64.97 precipitation 0.1 30 < th dose independent rect. 23 23
893 64.97 temperature 10.0 30 > th dose dependent rect. 2 1
896 64.97 temperature 25.0 720 > th dose dependent rect. 5 3
898 64.97 precipitation 0.1 30 < th dose dependent rect. 23 23
928 64.99 wind 9.0 30 < th dose independent rect. 3 23
930 64.99 atmosphere 995.0 30 > th dose dependent rect. 2 1
962 65.01 atmosphere 1005.0 30 > th dose independent rect. 2 1