BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0738400 Os01g0738400|AK110661
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0738400 Similar to Zn-finger transcription factor 414 e-116
Os05g0525900 Similar to Zing finger transcription factor PEI1 204 5e-53
Os05g0195200 Zinc finger, CCCH-type domain containing protein 155 3e-38
Os01g0192000 Similar to Zinc finger transcription factor 153 1e-37
Os12g0515500 Similar to Zn-finger transcription factor 148 4e-36
Os07g0568300 Similar to ZF protein (Fragment) 147 4e-36
Os03g0698800 Zinc finger, CCCH-type domain containing protein 145 3e-35
Os05g0128200 Similar to Transposable element Mu1 sequence 137 5e-33
Os07g0668600 Conserved hypothetical protein 119 1e-27
>Os01g0738400 Similar to Zn-finger transcription factor
Length = 225
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/225 (90%), Positives = 204/225 (90%)
Query: 1 MAYETSSDHQXXXXXXXXXXXQVHLAGAEASSPTWGGRCAYDEDFMMYEFKVRRCPRSRA 60
MAYETSSDHQ QVHLAGAEASSPTWGGRCAYDEDFMMYEFKVRRCPRSRA
Sbjct: 1 MAYETSSDHQLAAAAEFLAALQVHLAGAEASSPTWGGRCAYDEDFMMYEFKVRRCPRSRA 60
Query: 61 HEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACPRGSGCPFAHGTFETWLHP 120
HEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACPRGSGCPFAHGTFETWLHP
Sbjct: 61 HEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACPRGSGCPFAHGTFETWLHP 120
Query: 121 SRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSPRSPFTTSEXXXXXXXXXX 180
SRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSPRSPFTTSE
Sbjct: 121 SRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSPRSPFTTSEDSPPPSPMDM 180
Query: 181 KQIVLAMQQMDARKATRSVAPKTDMLQQELEEDAPELGWVSDLLM 225
KQIVLAMQQMDARKATRSVAPKTDMLQQELEEDAPELGWVSDLLM
Sbjct: 181 KQIVLAMQQMDARKATRSVAPKTDMLQQELEEDAPELGWVSDLLM 225
>Os05g0525900 Similar to Zing finger transcription factor PEI1
Length = 255
Score = 204 bits (518), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 104/197 (52%), Positives = 128/197 (64%), Gaps = 16/197 (8%)
Query: 45 FMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACPRG 104
FMMYEFKVRRC R+R+H+WT+CPYAHPGEAARRRDP V YTGEPCPDFR AACPRG
Sbjct: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
Query: 105 SGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSPRS 164
S CPFAHGTFE WLHPSRYRTRPCR+G+ C R VCFFAH ELR + + + SP+S
Sbjct: 119 STCPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGELRAGSKEDSPLSLSPKS 178
Query: 165 ---------PFTTSEXXXXX-------XXXXXKQIVLAMQQMDARKATRSVAPKTDMLQQ 208
P + E ++++ AM+++ RK S + T +L
Sbjct: 179 TLASLWESPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGLRKVRPSASSVTPVLPP 238
Query: 209 ELEEDAPELGWVSDLLM 225
+ED P+ GWVS+L+M
Sbjct: 239 VTDEDGPDFGWVSELVM 255
>Os05g0195200 Zinc finger, CCCH-type domain containing protein
Length = 402
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 83/121 (68%), Gaps = 3/121 (2%)
Query: 43 EDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACP 102
++F MYEFKVRRC R R+H+WT CP+AHPGE ARRRDP Y+G CPDFR + C
Sbjct: 76 DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFR---KGGCK 132
Query: 103 RGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSP 162
RG C FAHG FE WLHP+RYRT+PC+ G C R VCFFAH +LR++ + SP
Sbjct: 133 RGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSP 192
Query: 163 R 163
R
Sbjct: 193 R 193
>Os01g0192000 Similar to Zinc finger transcription factor
Length = 386
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 84/122 (68%), Gaps = 7/122 (5%)
Query: 43 EDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACP 102
++F MYEFKVRRC R R+H+WT CP+AHPGE ARRRDP Y+G CPDFR + C
Sbjct: 75 DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFR---KGGCK 131
Query: 103 RGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSP 162
RG C +AHG FE WLHP+RYRT+PC+ G C R VCFFAH +LR++ A SP
Sbjct: 132 RGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVL----PAQQSSP 187
Query: 163 RS 164
RS
Sbjct: 188 RS 189
>Os12g0515500 Similar to Zn-finger transcription factor
Length = 619
Score = 148 bits (373), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Query: 43 EDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACP 102
+DF MY FKVR C R+ +H+WT CP+ HPGE ARRRDP Y+ PCP+F+ A C
Sbjct: 172 DDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKGA--GCR 229
Query: 103 RGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSP 162
RG C +AHG FE+WLHP++YRTR C+ G+ CAR VCFFAH ELR + +A PSP
Sbjct: 230 RGDMCEYAHGVFESWLHPAQYRTRLCKDGVGCARRVCFFAHTPDELRPLYVSTGSAVPSP 289
Query: 163 R 163
R
Sbjct: 290 R 290
>Os07g0568300 Similar to ZF protein (Fragment)
Length = 657
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 84/122 (68%), Gaps = 2/122 (1%)
Query: 43 EDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACP 102
++F M+ FKVR C R+ +H+WT CP+ HPGE ARRRDP YT PCP+FR CP
Sbjct: 233 DEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPG--GCP 290
Query: 103 RGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSP 162
G C F+HG FE+WLHPS+YRTR C+ G CAR +CFFAH++ ELR V ++ A SP
Sbjct: 291 SGDSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICFFAHDEDELRHVPHNSGAGLLSP 350
Query: 163 RS 164
R+
Sbjct: 351 RA 352
>Os03g0698800 Zinc finger, CCCH-type domain containing protein
Length = 764
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 43 EDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACP 102
++F MY FK+R C R+ +H+WT CP+ HPGE ARRRDP Y+ PCPDFR + C
Sbjct: 280 DEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFR---KGVCR 336
Query: 103 RGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSP 162
RG C +AHG FE WLHP++YRTR C+ G C R VCFFAH ELR + +A PSP
Sbjct: 337 RGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTTDELRPLYVSTGSAVPSP 396
Query: 163 RS 164
R+
Sbjct: 397 RA 398
>Os05g0128200 Similar to Transposable element Mu1 sequence
Length = 380
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
Query: 43 EDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACP 102
++F MY FKV+ C R+ +H+WT CP+ HPGE ARRRDP +Y+ PCP+FR +C
Sbjct: 211 DEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGG--SCR 268
Query: 103 RGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSP 162
+G C +AHG FE WLHP++YRTR C+ + CAR +CFFAH ELR V A + P
Sbjct: 269 KGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDELRAVNPSAVSVVRVP 328
Query: 163 R 163
R
Sbjct: 329 R 329
>Os07g0668600 Conserved hypothetical protein
Length = 280
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 74/112 (66%), Gaps = 5/112 (4%)
Query: 43 EDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFR-----VAA 97
EDF ++ +KV+RCPRS +H+WTSCPYAH GE ARRRD Y CPD+R A
Sbjct: 47 EDFWIHVYKVQRCPRSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPREAAPGA 106
Query: 98 RAACPRGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELR 149
+C G C +AHG FE WLHPSR+RTR C +G C R +CFFAH+ ELR
Sbjct: 107 VPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELR 158
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.132 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,343,107
Number of extensions: 371449
Number of successful extensions: 915
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 904
Number of HSP's successfully gapped: 9
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)