Os01g0192000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Zinc finger transcription factor.
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Os01g0192000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Zinc finger transcription factor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.35 | 0.551 | 11.4 | 0.696 | 0.784 | 0.218 | -0.193 | -2.65 | 0.599 | 20.8 | 17.04 | 1302 | -- | -- |
| 148.14 | 0.571 | 11.4 | 0.406 | 0.611 | 0.41 | -0.773 | -- | 0.433 | 18.5 | 17.04 | 1302 | -- | -- |
| 137.38 | 0.546 | 11.4 | 0.708 | 0.784 | 0.231 | -- | -2.63 | 0.593 | 20.9 | 16.1 | 1304 | -- | -- |
| 147.82 | 0.566 | 11.4 | 0.117 | 0.81 | 0.834 | -- | -- | 0.466 | 20.5 | 79.83 | 4314 | -- | -- |
| 167.83 | 0.607 | 11.4 | 0.433 | -- | 0.395 | -- | 0.686 | 0.419 | -- | 16.1 | 1304 | -- | -- |
| 151.92 | 0.578 | 11.4 | 0.394 | 0.755 | -- | 0.328 | -- | 0.442 | 21 | -- | -- | -- | -- |
| 152.23 | 0.578 | 11.4 | 0.384 | 0.758 | -- | -- | -- | 0.443 | 20.8 | -- | -- | -- | -- |
| 170.5 | 0.611 | 11.4 | 0.393 | -- | 0.405 | -- | -- | 0.413 | -- | 16.1 | 1304 | -- | -- |
| 139.41 | 0.55 | 11.5 | -- | 0.759 | 0.881 | -- | -- | 0.315 | 20.7 | 75.65 | 7647 | -- | -- |
| 184.92 | 0.635 | 11.4 | 0.383 | -- | -- | -- | -- | 0.437 | -- | -- | -- | -- | -- |
| 156.11 | 0.584 | 11.4 | -- | 0.757 | -- | -- | -- | 0.4 | 20.9 | -- | -- | -- | -- |
| 171.99 | 0.611 | 11.4 | -- | -- | 0.883 | -- | -- | 0.308 | -- | 75.34 | 7562 | -- | -- |
| 188.8 | 0.641 | 11.4 | -- | -- | -- | -- | -- | 0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.69 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 20 | 4 |
| 32 | 132.40 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 22 | 9 |
| 33 | 132.45 | atmosphere | 1005 | 720 | > th | dose independent | sin | 14 | NA |
| 40 | 132.68 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 47 | 132.91 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 50 | 132.99 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 62 | 133.19 | radiation | 10 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 64 | 133.20 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 12 | 19 |
| 162 | 134.24 | radiation | 40 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 163 | 134.24 | radiation | 40 | 4320 | < th | dose dependent | rect. | 14 | 7 |
| 195 | 134.38 | radiation | 1 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 268 | 134.55 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 284 | 134.61 | radiation | 20 | 4320 | < th | dose dependent | rect. | 14 | 7 |
| 286 | 134.62 | radiation | 20 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 291 | 134.62 | humidity | 80 | 30 | > th | dose dependent | rect. | 23 | 14 |
| 333 | 134.73 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 8 |
| 353 | 134.81 | humidity | 80 | 30 | > th | dose dependent | rect. | 23 | 8 |
| 360 | 134.83 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 373 | 134.86 | humidity | 90 | 10 | < th | dose independent | rect. | 20 | 14 |
| 388 | 134.91 | radiation | 10 | 4320 | < th | dose independent | sin | 16 | NA |
| 406 | 135.03 | radiation | 20 | 4320 | < th | dose dependent | sin | 14 | NA |
| 410 | 135.04 | humidity | 90 | 270 | < th | dose independent | rect. | 17 | 14 |
| 416 | 135.05 | radiation | 30 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 424 | 135.07 | radiation | 10 | 4320 | > th | dose independent | rect. | 14 | 18 |
| 447 | 135.24 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 458 | 135.27 | humidity | 80 | 30 | > th | dose dependent | rect. | 23 | 17 |
| 463 | 135.29 | humidity | 60 | 30 | > th | dose dependent | rect. | 23 | 10 |
| 469 | 135.35 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 8 |
| 566 | 135.72 | radiation | 30 | 4320 | > th | dose independent | rect. | 14 | 18 |
| 583 | 135.77 | wind | 1 | 90 | > th | dose independent | rect. | 19 | 15 |
| 589 | 135.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 599 | 135.83 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 600 | 135.83 | radiation | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 638 | 135.90 | radiation | 20 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 648 | 135.93 | radiation | 10 | 4320 | > th | dose independent | sin | 13 | NA |
| 666 | 136.01 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 671 | 136.03 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 711 | 136.08 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 735 | 136.15 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 755 | 136.22 | humidity | 50 | 4320 | > th | dose independent | rect. | 21 | 14 |
| 757 | 136.22 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 763 | 136.23 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 777 | 136.28 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 781 | 136.29 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 813 | 136.32 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 819 | 136.33 | humidity | 60 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 827 | 136.34 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 851 | 136.38 | temperature | 15 | 90 | > th | dose independent | rect. | 19 | 15 |
| 883 | 136.42 | radiation | 40 | 90 | < th | dose independent | rect. | 10 | 9 |
| 886 | 136.43 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 891 | 136.44 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 902 | 136.46 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 905 | 136.47 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 916 | 136.49 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 950 | 136.54 | temperature | 15 | 10 | > th | dose independent | rect. | 20 | 14 |