Os05g0128200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposable element Mu1 sequence.
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Os05g0128200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposable element Mu1 sequence.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.99 | 0.322 | 14.6 | 1.58 | 0.886 | 0.617 | -0.391 | 0.471 | 0.152 | 7.05 | 30.2 | 353 | -- | -- |
| 47.17 | 0.32 | 14.6 | 1.64 | 0.888 | 0.604 | -0.285 | -- | 0.15 | 6.92 | 30.4 | 417 | -- | -- |
| 47.3 | 0.32 | 14.6 | 1.61 | 0.887 | 0.624 | -- | 0.227 | 0.163 | 6.99 | 30.16 | 389 | -- | -- |
| 47.34 | 0.32 | 14.6 | 1.65 | 0.89 | 0.587 | -- | -- | 0.163 | 6.94 | 30.1 | 413 | -- | -- |
| 78.6 | 0.413 | 14.6 | 1.82 | -- | 1.43 | -- | 0.124 | 0.274 | -- | 38.78 | 458 | -- | -- |
| 51.91 | 0.338 | 14.6 | 1.51 | 1.05 | -- | -0.198 | -- | 0.0536 | 6.76 | -- | -- | -- | -- |
| 52.01 | 0.338 | 14.6 | 1.5 | 1.05 | -- | -- | -- | 0.0541 | 6.75 | -- | -- | -- | -- |
| 78.52 | 0.413 | 14.6 | 1.84 | -- | 1.42 | -- | -- | 0.292 | -- | 32.92 | 458 | -- | -- |
| 111.01 | 0.493 | 14.7 | -- | 1.1 | -0.194 | -- | -- | -0.145 | 6.46 | 30.1 | 413 | -- | -- |
| 110.02 | 0.49 | 14.6 | 1.53 | -- | -- | -- | -- | 0.0748 | -- | -- | -- | -- | -- |
| 111.57 | 0.494 | 14.6 | -- | 1.07 | -- | -- | -- | -0.113 | 6.66 | -- | -- | -- | -- |
| 130.3 | 0.532 | 14.7 | -- | -- | -1.05 | -- | -- | -0.358 | -- | 22.7 | 47520 | -- | -- |
| 171.53 | 0.611 | 14.7 | -- | -- | -- | -- | -- | -0.0946 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.30 | temperature | 25.0 | 90 | > th | dose independent | rect. | 13 | 10 |
| 2 | 44.62 | temperature | 25.0 | 10 | > th | dose independent | rect. | 13 | 7 |
| 5 | 44.77 | temperature | 25.0 | 10 | > th | dose independent | rect. | 13 | 11 |
| 9 | 45.01 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 11 |
| 11 | 45.06 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 13 | 11 |
| 12 | 45.07 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 13 | 45.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 17 | 45.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 12 |
| 27 | 45.28 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 15 |
| 60 | 45.63 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 65 | 45.68 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 13 | 20 |
| 85 | 45.76 | temperature | 30.0 | 270 | < th | dose dependent | sin | 19 | NA |
| 87 | 45.77 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 13 | 20 |
| 89 | 45.78 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 13 | 15 |
| 119 | 45.95 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 13 |
| 140 | 46.03 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 149 | 46.05 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 167 | 46.09 | temperature | 25.0 | 90 | > th | dose independent | rect. | 13 | 18 |
| 196 | 46.21 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 6 |
| 206 | 46.23 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 225 | 46.27 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 21 |
| 259 | 46.35 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 282 | 46.38 | wind | 7.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 287 | 46.39 | temperature | 25.0 | 10 | > th | dose independent | rect. | 13 | 15 |
| 304 | 46.41 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 314 | 46.42 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 330 | 46.45 | wind | 7.0 | 90 | < th | dose independent | rect. | 13 | 6 |
| 336 | 46.45 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 364 | 46.51 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 383 | 46.53 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 391 | 46.55 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 428 | 46.59 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 19 | 18 |
| 470 | 46.66 | temperature | 25.0 | 270 | > th | dose independent | sin | 20 | NA |
| 496 | 46.69 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 509 | 46.72 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 13 |
| 562 | 46.79 | temperature | 25.0 | 270 | < th | dose independent | sin | 20 | NA |
| 573 | 46.80 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 13 | 6 |
| 617 | 46.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 634 | 46.87 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 690 | 46.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 706 | 46.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 11 |
| 786 | 47.04 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 793 | 47.05 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 834 | 47.08 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 837 | 47.09 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 838 | 47.09 | wind | 7.0 | 90 | < th | dose independent | rect. | 13 | 10 |
| 844 | 47.09 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 16 | 10 |
| 851 | 47.10 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 857 | 47.10 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 13 | 11 |
| 867 | 47.11 | wind | 9.0 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 930 | 47.16 | humidity | 90.0 | 90 | < th | dose independent | rect. | 13 | 6 |
| 931 | 47.16 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 13 | 6 |
| 934 | 47.16 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 952 | 47.18 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 2 | 3 |
| 955 | 47.18 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 969 | 47.19 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 5 |
| 987 | 47.20 | temperature | 10.0 | 270 | > th | dose dependent | sin | 20 | NA |
| 1000 | 47.21 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 2 | 3 |