BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0128200 Os05g0128200|AK099898
(380 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0128200 Similar to Transposable element Mu1 sequence 467 e-132
Os12g0515500 Similar to Zn-finger transcription factor 245 4e-65
Os03g0698800 Zinc finger, CCCH-type domain containing protein 234 1e-61
Os07g0568300 Similar to ZF protein (Fragment) 219 2e-57
Os01g0192000 Similar to Zinc finger transcription factor 180 1e-45
Os05g0195200 Zinc finger, CCCH-type domain containing protein 179 2e-45
Os05g0525900 Similar to Zing finger transcription factor PEI1 144 2e-34
Os01g0738400 Similar to Zn-finger transcription factor 130 2e-30
Os07g0668600 Conserved hypothetical protein 110 2e-24
>Os05g0128200 Similar to Transposable element Mu1 sequence
Length = 380
Score = 467 bits (1201), Expect = e-132, Method: Compositional matrix adjust.
Identities = 252/380 (66%), Positives = 252/380 (66%)
Query: 1 MCSGPRKPSTPPLPQQQKEATVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAGLWYGP 60
MCSGPRKPSTPPLPQQQKEATVM GVAGLWYGP
Sbjct: 1 MCSGPRKPSTPPLPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGP 60
Query: 61 SASGVARLGMERRTAAMVAALYGSTGVLGYVVXXXXXXXXXXSETDGATPLHMXXXXXXX 120
SASGVARLGMERRTAAMVAALYGSTGVLGYVV SETDGATPLHM
Sbjct: 61 SASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAA 120
Query: 121 XXXXXXXXXXXXXXSVDALSASGLRAGDLLPRATAAEKAIRLLLXXXXXXXXXXXXXXXX 180
SVDALSASGLRAGDLLPRATAAEKAIRLLL
Sbjct: 121 NAVAATRLLLAAGASVDALSASGLRAGDLLPRATAAEKAIRLLLKSPAVSPSSSPKKSAS 180
Query: 181 XXXXXXXQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPG 240
QEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPG
Sbjct: 181 PPSPPPPQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPG 240
Query: 241 ENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGC 300
ENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGC
Sbjct: 241 ENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGC 300
Query: 301 ARRICFFAHKPDELXXXXXXXXXXXXXXXXIRHXXXXXXXXXXXXXVMGELSCQXXXXXX 360
ARRICFFAHKPDEL IRH VMGELSCQ
Sbjct: 301 ARRICFFAHKPDELRAVNPSAVSVVRVPRPIRHAGGDARRGGGAGRVMGELSCQGRPRRR 360
Query: 361 XXXXXXXXXXXDGGMIIRGS 380
DGGMIIRGS
Sbjct: 361 RHIRAVAGAGADGGMIIRGS 380
>Os12g0515500 Similar to Zn-finger transcription factor
Length = 619
Score = 245 bits (626), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 154/262 (58%), Gaps = 34/262 (12%)
Query: 57 WYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVXXXXXXX-XXXSETDGATPLHMXX 115
WY P+ G E T MVAA+YGS G L ++ S + +TPLH+
Sbjct: 44 WYTPAR------GAEPLTPLMVAAVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAA 97
Query: 116 XXXXXXXXXXXXXXXXXXXSVDALSASGLRAGDLL---PRATAAEKAIRLLLXXXXXXXX 172
L RA DL+ P + + + LL
Sbjct: 98 AGGSASAPAAVSRLLAAGADPALLDHLQRRASDLVALPPNSLPLKNHLLSLLG------- 150
Query: 173 XXXXXXXXXXXXXXXQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWT 232
A+KE+PPD +LPD+K+G +++D+FRMYSFKV+ CSRAYSHDWT
Sbjct: 151 -----------------ARKEWPPDPSLPDIKNGAYASDDFRMYSFKVRACSRAYSHDWT 193
Query: 233 ECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTR 292
ECPFVHPGENARRRDPR+Y YSCVPCPEF+KG CR+GD CEYAHGVFE WLHPAQYRTR
Sbjct: 194 ECPFVHPGENARRRDPRKYHYSCVPCPEFKKGAGCRRGDMCEYAHGVFESWLHPAQYRTR 253
Query: 293 LCKDEVGCARRICFFAHKPDEL 314
LCKD VGCARR+CFFAH PDEL
Sbjct: 254 LCKDGVGCARRVCFFAHTPDEL 275
>Os03g0698800 Zinc finger, CCCH-type domain containing protein
Length = 764
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 98/124 (79%), Positives = 111/124 (89%), Gaps = 1/124 (0%)
Query: 191 KKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRR 250
KKEYP D +LPD+K+ ++++DEFRMYSFK++PCSRAYSHDWTECPFVHPGENARRRDPR+
Sbjct: 260 KKEYPVDPSLPDIKNSIYASDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRK 319
Query: 251 YSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHK 310
Y YSCVPCP+FRK G CR+GD CEYAHGVFECWLHPAQYRTRLCKD C RR+CFFAH
Sbjct: 320 YHYSCVPCPDFRK-GVCRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHT 378
Query: 311 PDEL 314
DEL
Sbjct: 379 TDEL 382
>Os07g0568300 Similar to ZF protein (Fragment)
Length = 657
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 108/124 (87%)
Query: 191 KKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRR 250
KKEYP D TLPD+KS ++++DEFRM++FKV+PCSRAYSHDWTECPFVHPGENARRRDPR+
Sbjct: 213 KKEYPVDPTLPDIKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRK 272
Query: 251 YSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHK 310
+ Y+ VPCP FR+ G C GD+CE++HGVFE WLHP+QYRTRLCK+ CARRICFFAH
Sbjct: 273 HPYTAVPCPNFRRPGGCPSGDSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICFFAHD 332
Query: 311 PDEL 314
DEL
Sbjct: 333 EDEL 336
>Os01g0192000 Similar to Zinc finger transcription factor
Length = 386
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 77/104 (74%), Positives = 87/104 (83%), Gaps = 1/104 (0%)
Query: 211 DEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKG 270
DEFRMY FKV+ C+R SHDWTECPF HPGE ARRRDPR+Y YS CP+FRKGG C++G
Sbjct: 75 DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGG-CKRG 133
Query: 271 DACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDEL 314
DACEYAHGVFECWLHPA+YRT+ CKD C RR+CFFAH PD+L
Sbjct: 134 DACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQL 177
>Os05g0195200 Zinc finger, CCCH-type domain containing protein
Length = 402
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 77/107 (71%), Positives = 89/107 (83%), Gaps = 1/107 (0%)
Query: 208 FSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSC 267
++ DEFRMY FKV+ C+R SHDWTECPF HPGE ARRRDPRRY YS CP+FRKGG C
Sbjct: 73 YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGG-C 131
Query: 268 RKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDEL 314
++GDACE+AHGVFECWLHPA+YRT+ CKD C RR+CFFAH PD+L
Sbjct: 132 KRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQL 178
>Os05g0525900 Similar to Zing finger transcription factor PEI1
Length = 255
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Query: 213 FRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRK--GGSCRKG 270
F MY FKV+ C+RA SHDWT CP+ HPGE ARRRDPRR +Y+ PCP+FR+ G +C +G
Sbjct: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
Query: 271 DACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDEL 314
C +AHG FE WLHP++YRTR C+ V C RR+CFFAH EL
Sbjct: 119 STCPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGEL 162
>Os01g0738400 Similar to Zn-finger transcription factor
Length = 225
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Query: 211 DEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKG--GSCR 268
++F MY FKV+ C R+ +H+WT CP+ HPGE ARRRDP +Y+ PCP+FR +C
Sbjct: 43 EDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACP 102
Query: 269 KGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDEL 314
+G C +AHG FE WLHP++YRTR C+ + CAR +CFFAH EL
Sbjct: 103 RGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKEL 148
>Os07g0668600 Conserved hypothetical protein
Length = 280
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 75/112 (66%), Gaps = 7/112 (6%)
Query: 210 TDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGG---- 265
+++F ++ +KV+ C R+ SHDWT CP+ H GE ARRRD RR++Y+ V CP++R
Sbjct: 46 SEDFWIHVYKVQRCPRSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPREAAPG 105
Query: 266 ---SCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDEL 314
SC G C YAHGVFE WLHP+++RTR+C C RRICFFAH EL
Sbjct: 106 AVPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAEL 157
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,849,859
Number of extensions: 327654
Number of successful extensions: 914
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 893
Number of HSP's successfully gapped: 9
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)