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Os05g0195200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCCH-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0388) R2 : 0.577
β1 : 2.98 (0.142) R2dD : 0.408 R2D : 0.336
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.95 (0.0711) R2dE : 0.162 R2E : 0.153
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.646 (0.0828) R2dN8 : 0.0754 R2N8 : 0.00442
σ : 0.726
deviance : 242.68
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.55
memory length : 58
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
214.3 0.688 10.1 2.9 0.556 -1.12 0.118 1.65 0.66 20 0.6194 38 -- --
220.96 0.692 10.1 2.94 0.77 -1.39 1.94 -- 0.619 21.8 0.62 40 -- --
214.32 0.682 10.1 2.9 0.558 -1.12 -- 1.7 0.663 19.9 0.61 38 -- --
232.25 0.71 10.1 2.92 0.522 -1.08 -- -- 0.669 19.8 0.6172 38 -- --
225.7 0.7 10.1 2.95 -- -0.985 -- 1.79 0.631 -- 1.876 126 -- --
244.32 0.733 10.1 3.05 1.13 -- -1.77 -- 0.708 13.3 -- -- -- --
256.87 0.751 10.1 2.99 1.13 -- -- -- 0.699 13.5 -- -- -- --
242.68 0.726 10.1 2.98 -- -0.95 -- -- 0.646 -- 0.55 58 -- --
458.83 0.998 10.1 -- 0.355 -1.02 -- -- 0.588 19.7 0.04866 33 -- --
335.46 0.856 10.1 2.95 -- -- -- -- 0.675 -- -- -- -- --
492.67 1.04 10.2 -- 1.08 -- -- -- 0.366 13.4 -- -- -- --
466.93 1.01 10.2 -- -- -0.869 -- -- 0.442 -- 0.003318 35 -- --
564.36 1.11 10.2 -- -- -- -- -- 0.348 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 205.45 humidity 70 720 > th dose independent rect. 17 11
3 206.54 temperature 30 720 < th dose independent rect. 17 2
5 206.85 humidity 50 720 > th dose dependent rect. 17 2
8 207.45 humidity 70 720 > th dose independent rect. 17 3
12 208.76 radiation 20 14400 > th dose dependent rect. 17 14
14 208.83 radiation 20 14400 > th dose dependent rect. 6 1
28 208.92 radiation 1 720 > th dose independent rect. 13 18
30 209.11 temperature 30 720 < th dose independent rect. 17 10
31 209.54 wind 3 43200 > th dose dependent rect. 3 1
32 209.60 temperature 10 43200 > th dose independent rect. 10 5
34 209.75 radiation 1 720 < th dose independent rect. 1 18
39 210.00 wind 3 43200 > th dose dependent rect. 3 3
41 210.18 wind 9 43200 < th dose dependent rect. 3 1
46 210.38 radiation 1 720 < th dose dependent rect. 1 18
48 210.45 radiation 20 4320 < th dose independent rect. 23 9
51 210.46 wind 3 43200 > th dose dependent rect. 5 1
52 210.48 wind 9 43200 < th dose dependent rect. 3 3
55 210.52 wind 7 14400 > th dose independent rect. 18 1
56 210.53 radiation 1 720 > th dose independent rect. 10 21
79 210.95 wind 9 14400 < th dose independent rect. 16 1
82 211.05 radiation 1 30 < th dose dependent rect. 5 23
88 211.27 wind 9 14400 < th dose independent rect. 16 3
90 211.29 humidity 80 43200 < th dose independent rect. 22 1
94 211.36 wind 7 14400 > th dose dependent rect. 24 13
98 211.44 wind 5 14400 > th dose dependent rect. 18 1
99 211.44 wind 7 14400 > th dose dependent rect. 2 11
109 211.58 wind 3 43200 > th dose independent rect. 3 3
110 211.58 humidity 70 14400 < th dose dependent rect. 19 3
120 211.59 wind 9 14400 > th dose independent rect. 16 4
122 211.61 wind 9 43200 < th dose dependent rect. 24 6
137 211.77 humidity 70 720 > th dose independent rect. 7 21
169 211.88 wind 3 43200 < th dose independent rect. 3 3
176 211.92 radiation 1 30 < th dose independent rect. 5 23
181 211.95 wind 7 43200 > th dose independent rect. 3 1
185 211.98 atmosphere 1005 14400 < th dose independent rect. 17 1
189 211.99 humidity 70 720 > th dose independent rect. 9 19
193 212.00 radiation 1 720 < th dose dependent rect. 22 21
194 212.01 wind 7 14400 > th dose dependent rect. 16 3
198 212.03 wind 5 14400 > th dose independent rect. 11 1
199 212.03 wind 9 14400 > th dose dependent rect. 16 1
200 212.04 humidity 70 720 > th dose independent sin 14 NA
203 212.05 wind 7 43200 < th dose independent rect. 3 1
210 212.07 wind 5 14400 > th dose dependent rect. 10 3
224 212.15 atmosphere 1005 14400 > th dose independent rect. 17 1
236 212.22 humidity 70 720 < th dose independent rect. 13 19
243 212.26 wind 5 14400 < th dose independent rect. 14 1
263 212.37 humidity 80 43200 > th dose independent rect. 22 1
271 212.41 wind 5 14400 < th dose independent rect. 14 14
279 212.47 humidity 70 720 > th dose independent rect. 16 19
281 212.49 radiation 10 14400 > th dose independent rect. 5 1
287 212.49 humidity 70 720 < th dose independent rect. 13 7
308 212.54 wind 5 14400 > th dose independent rect. 14 1
313 212.55 wind 7 14400 > th dose independent rect. 4 9
324 212.61 wind 5 14400 > th dose independent rect. 14 14
339 212.65 humidity 50 720 > th dose dependent rect. 7 21
342 212.66 temperature 30 720 < th dose independent rect. 16 13
346 212.68 wind 7 14400 > th dose independent rect. 24 13
350 212.70 wind 5 14400 < th dose independent rect. 10 3
358 212.72 wind 7 14400 < th dose independent rect. 5 8
389 212.83 wind 3 43200 < th dose independent rect. 24 6
403 212.89 wind 7 14400 < th dose independent rect. 18 1
422 212.97 wind 7 14400 < th dose independent rect. 24 13
428 212.98 wind 3 14400 > th dose dependent rect. 14 1
435 213.01 wind 3 43200 > th dose independent rect. 24 9
443 213.03 wind 9 14400 < th dose independent rect. 22 14
453 213.07 wind 7 43200 < th dose dependent rect. 1 12
458 213.10 wind 9 43200 < th dose independent rect. 15 14
459 213.10 wind 7 43200 < th dose dependent rect. 23 14
464 213.11 wind 7 43200 < th dose dependent rect. 3 10
482 213.18 wind 5 14400 < th dose independent rect. 16 12
483 213.18 wind 9 43200 > th dose independent rect. 15 14
497 213.21 wind 7 14400 > th dose independent rect. 7 6
513 213.24 humidity 70 14400 > th dose independent rect. 19 13
515 213.25 humidity 70 720 < th dose independent sin 16 NA
517 213.26 wind 3 43200 < th dose independent rect. 24 9
524 213.27 wind 3 43200 < th dose independent rect. 22 11
525 213.27 wind 9 14400 > th dose dependent rect. 14 22
530 213.28 wind 9 14400 > th dose dependent rect. 14 14
532 213.29 wind 9 14400 > th dose dependent rect. 14 12
548 213.32 wind 7 14400 < th dose independent rect. 7 6
550 213.32 wind 9 14400 > th dose dependent rect. 14 9
569 213.35 radiation 40 4320 < th dose dependent rect. 7 1
585 213.38 wind 1 43200 > th dose dependent rect. 23 14
599 213.42 radiation 1 4320 > th dose dependent rect. 7 1
601 213.42 wind 5 14400 > th dose dependent rect. 2 15
628 213.48 wind 5 14400 < th dose independent sin 16 NA
652 213.51 wind 7 14400 > th dose dependent sin 5 NA
663 213.53 wind 5 14400 > th dose independent rect. 16 12
675 213.54 wind 9 14400 > th dose dependent rect. 14 20
690 213.57 wind 5 14400 > th dose independent sin 16 NA
694 213.57 humidity 70 720 > th dose independent rect. 24 20
695 213.57 humidity 70 720 < th dose independent rect. 13 22
705 213.59 wind 9 14400 > th dose independent rect. 14 9
714 213.60 wind 9 14400 < th dose dependent rect. 14 1
727 213.62 wind 7 43200 < th dose dependent sin 7 NA
736 213.64 wind 9 14400 < th dose independent sin 7 NA
762 213.68 wind 9 14400 > th dose independent rect. 14 20
793 213.74 wind 9 14400 < th dose independent rect. 14 9
821 213.77 wind 9 14400 > th dose independent sin 7 NA
916 213.88 humidity 60 43200 > th dose independent rect. 14 20
952 213.92 wind 1 43200 > th dose dependent sin 7 NA
962 213.93 wind 3 14400 > th dose dependent rect. 14 11
971 213.95 wind 9 14400 < th dose independent rect. 14 20
980 213.96 humidity 90 30 < th dose independent rect. 14 19
981 213.96 wind 9 14400 < th dose independent rect. 14 22
990 213.97 wind 7 14400 < th dose independent rect. 24 16