BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0195200 Os05g0195200|AK106392
(402 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0195200 Zinc finger, CCCH-type domain containing protein 545 e-155
Os01g0192000 Similar to Zinc finger transcription factor 376 e-104
Os03g0698800 Zinc finger, CCCH-type domain containing protein 197 1e-50
Os12g0515500 Similar to Zn-finger transcription factor 189 4e-48
Os05g0128200 Similar to Transposable element Mu1 sequence 185 5e-47
Os07g0568300 Similar to ZF protein (Fragment) 177 9e-45
Os05g0525900 Similar to Zing finger transcription factor PEI1 166 2e-41
Os01g0738400 Similar to Zn-finger transcription factor 154 1e-37
Os07g0668600 Conserved hypothetical protein 115 6e-26
>Os05g0195200 Zinc finger, CCCH-type domain containing protein
Length = 402
Score = 545 bits (1404), Expect = e-155, Method: Compositional matrix adjust.
Identities = 281/402 (69%), Positives = 281/402 (69%)
Query: 1 MMMMGEGAHAPPWQQHXXXXXXXXXXXXXXXXXXXXXPYHLLDTLRHYLPSNXXXXXXXX 60
MMMMGEGAHAPPWQQH PYHLLDTLRHYLPSN
Sbjct: 1 MMMMGEGAHAPPWQQHVASPVSGVEGGGGRESEVVAAPYHLLDTLRHYLPSNEAAAAEDE 60
Query: 61 XXXXXXXXXXXXYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSG 120
YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSG
Sbjct: 61 EEAAAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSG 120
Query: 121 TACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRV 180
TACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRV
Sbjct: 121 TACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRV 180
Query: 181 LPPSQQQGSNSPRXXXXXXXXXXXSPLAESYDGSPLRRQAFESYLXXXXXXXXXXXXXXX 240
LPPSQQQGSNSPR SPLAESYDGSPLRRQAFESYL
Sbjct: 181 LPPSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTLVS 240
Query: 241 XXXXXXXXXXXXXXDXXXXXXXXXXXXXXSPVNDVHVSLRQLRLGSPRSAPSCASFLPAG 300
D SPVNDVHVSLRQLRLGSPRSAPSCASFLPAG
Sbjct: 241 PPRSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAG 300
Query: 301 YQYGSPKSPXXXXXXXLYSLPSTPTRLSPXXXXXXXXXXXXXEPLDLGLIEEEQPMERVE 360
YQYGSPKSP LYSLPSTPTRLSP EPLDLGLIEEEQPMERVE
Sbjct: 301 YQYGSPKSPAAAAAAALYSLPSTPTRLSPVTVTTASGATVTVEPLDLGLIEEEQPMERVE 360
Query: 361 SGRALREKVFERLSKEATVSTDXXXXXXGVAPDVGWVSDLIN 402
SGRALREKVFERLSKEATVSTD GVAPDVGWVSDLIN
Sbjct: 361 SGRALREKVFERLSKEATVSTDAAAAAAGVAPDVGWVSDLIN 402
>Os01g0192000 Similar to Zinc finger transcription factor
Length = 386
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 220/406 (54%), Positives = 240/406 (59%), Gaps = 24/406 (5%)
Query: 1 MMMMGEGAHA-PPWQQHXXXXXXXXXXXXXXXXXXXXXPYHLLDTLRHYLPSN-XXXXXX 58
MMMMGEG + PPW PY ++ LR YLP+N
Sbjct: 1 MMMMGEGVSSVPPWSH--LPVSGVDVLGGGGGGGDEMTPY-VIAALRDYLPANDVGVGAD 57
Query: 59 XXXXXXXXXXXXXXYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCY 118
YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPR+Y Y
Sbjct: 58 EEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHY 117
Query: 119 SGTACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQL 178
SGTACPDFRKGGCKRGDACE+AHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQL
Sbjct: 118 SGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQL 177
Query: 179 RVLPPSQQQGSNSPRXXXXXXXXXXXSPLAESYDGSPLRRQAFESYLXXXXXXXXXXXXX 238
RVLP Q +SPR SPLAESYDGSPLRRQAFESYL
Sbjct: 178 RVLPAQQ----SSPR-------SVASSPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTL 226
Query: 239 XXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXSPVNDVHVSLRQLRLGSPRSAPSCA-SFL 297
D SPVNDV S RQLRL +S+PS S+
Sbjct: 227 MSPPKSPPSESPPLSPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYP 286
Query: 298 PAGYQYGSPKSPXXXXXXXLYSLPSTPTRLSPXXXXXXXXXXXXXEPLDLGLIEEEQPME 357
+ YGSPK+ LYSLP+TP S EPLDLGLI +E+P++
Sbjct: 287 SSSAVYGSPKA-----ATGLYSLPTTPL-ASTATVTTASSFMPNLEPLDLGLIGDEEPVQ 340
Query: 358 RVESGRALREKVFERLSKEATVSTDXXX-XXXGVAPDVGWVSDLIN 402
RVESGRALREKVFERLS++ +S D GV DV WVSDLIN
Sbjct: 341 RVESGRALREKVFERLSRDGAISGDATAFATAGVGLDVDWVSDLIN 386
>Os03g0698800 Zinc finger, CCCH-type domain containing protein
Length = 764
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 96/121 (79%)
Query: 73 YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCK 132
YA DEFRMY FK+R C+R SHDWTECPF HPGE ARRRDPR+Y YS CPDFRKG C+
Sbjct: 277 YASDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGVCR 336
Query: 133 RGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSP 192
RGD CE+AHGVFECWLHPA+YRT+ CKDGT+C RRVCFFAHT D+LR L S SP
Sbjct: 337 RGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTTDELRPLYVSTGSAVPSP 396
Query: 193 R 193
R
Sbjct: 397 R 397
>Os12g0515500 Similar to Zn-finger transcription factor
Length = 619
Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 85/122 (69%), Positives = 95/122 (77%), Gaps = 1/122 (0%)
Query: 73 YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKG-GC 131
YA D+FRMY FKVR C+R SHDWTECPF HPGE ARRRDPR+Y YS CP+F+KG GC
Sbjct: 169 YASDDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKGAGC 228
Query: 132 KRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNS 191
+RGD CE+AHGVFE WLHPA+YRT+ CKDG C RRVCFFAHTPD+LR L S S
Sbjct: 229 RRGDMCEYAHGVFESWLHPAQYRTRLCKDGVGCARRVCFFAHTPDELRPLYVSTGSAVPS 288
Query: 192 PR 193
PR
Sbjct: 289 PR 290
>Os05g0128200 Similar to Transposable element Mu1 sequence
Length = 380
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 95/122 (77%), Gaps = 1/122 (0%)
Query: 73 YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGG-C 131
++ DEFRMY FKV+ C+R SHDWTECPF HPGE ARRRDPRRY YS CP+FRKGG C
Sbjct: 208 FSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSC 267
Query: 132 KRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNS 191
++GDACE+AHGVFECWLHPA+YRT+ CKD C RR+CFFAH PD+LR + PS
Sbjct: 268 RKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDELRAVNPSAVSVVRV 327
Query: 192 PR 193
PR
Sbjct: 328 PR 329
>Os07g0568300 Similar to ZF protein (Fragment)
Length = 657
Score = 177 bits (450), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 78/122 (63%), Positives = 95/122 (77%), Gaps = 1/122 (0%)
Query: 73 YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRK-GGC 131
YA DEFRM+ FKVR C+R SHDWTECPF HPGE ARRRDPR++ Y+ CP+FR+ GGC
Sbjct: 230 YASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGC 289
Query: 132 KRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNS 191
GD+CEF+HGVFE WLHP++YRT+ CK+G AC RR+CFFAH D+LR +P + G S
Sbjct: 290 PSGDSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICFFAHDEDELRHVPHNSGAGLLS 349
Query: 192 PR 193
PR
Sbjct: 350 PR 351
>Os05g0525900 Similar to Zing finger transcription factor PEI1
Length = 255
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/119 (65%), Positives = 86/119 (72%), Gaps = 3/119 (2%)
Query: 78 FRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRK---GGCKRG 134
F MYEFKVRRCAR RSHDWT CP+AHPGE ARRRDPRR Y+G CPDFR+ C RG
Sbjct: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
Query: 135 DACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSPR 193
C FAHG FE WLHP+RYRT+PC+ G ACRRRVCFFAHT +LR S SP+
Sbjct: 119 STCPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGELRAGSKEDSPLSLSPK 177
>Os01g0738400 Similar to Zn-finger transcription factor
Length = 225
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 83/121 (68%), Gaps = 3/121 (2%)
Query: 76 DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFR---KGGCK 132
++F MYEFKVRRC R R+H+WT CP+AHPGE ARRRDP Y+G CPDFR + C
Sbjct: 43 EDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACP 102
Query: 133 RGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSP 192
RG C FAHG FE WLHP+RYRT+PC+ G C R VCFFAH +LR++ + SP
Sbjct: 103 RGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIVGDDAAAATPSP 162
Query: 193 R 193
R
Sbjct: 163 R 163
>Os07g0668600 Conserved hypothetical protein
Length = 280
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 79/117 (67%), Gaps = 8/117 (6%)
Query: 76 DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFR-------- 127
++F ++ +KV+RC R SHDWT CP+AH GE+ARRRD RR+ Y+ +CPD+R
Sbjct: 47 EDFWIHVYKVQRCPRSSSHDWTSCPYAHKGERARRRDTRRFAYAAVSCPDYRPREAAPGA 106
Query: 128 KGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPS 184
C G C +AHGVFE WLHP+R+RT+ C GT C RR+CFFAH+ +LR P S
Sbjct: 107 VPSCAHGLRCRYAHGVFELWLHPSRFRTRMCSAGTRCPRRICFFAHSAAELRDDPNS 163
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,356,826
Number of extensions: 423938
Number of successful extensions: 757
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 9
Length of query: 402
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 299
Effective length of database: 11,657,759
Effective search space: 3485669941
Effective search space used: 3485669941
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)