BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0525900 Os05g0525900|AK108249
(255 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03790.1 | chr1:954589-955770 FORWARD LENGTH=394 140 6e-34
AT2G25900.1 | chr2:11041817-11042764 FORWARD LENGTH=316 138 3e-33
AT4G29190.1 | chr4:14392233-14393303 REVERSE LENGTH=357 137 8e-33
AT5G44260.1 | chr5:17829974-17831119 REVERSE LENGTH=382 135 2e-32
AT2G19810.1 | chr2:8550419-8551498 FORWARD LENGTH=360 135 3e-32
AT2G41900.1 | chr2:17491352-17493502 FORWARD LENGTH=717 131 3e-31
AT2G40140.1 | chr2:16772537-16774330 FORWARD LENGTH=598 130 8e-31
AT5G58620.1 | chr5:23693959-23695782 FORWARD LENGTH=608 129 2e-30
AT3G55980.1 | chr3:20776857-20778599 FORWARD LENGTH=581 129 2e-30
AT5G12850.1 | chr5:4057068-4059188 FORWARD LENGTH=707 127 4e-30
AT5G07500.1 | chr5:2372716-2373453 FORWARD LENGTH=246 120 5e-28
>AT1G03790.1 | chr1:954589-955770 FORWARD LENGTH=394
Length = 393
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 85/142 (59%), Gaps = 7/142 (4%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F M+EFK+RRC R+RSHDWT CP+AHPGE ARRRDPRR Y+GE CP+FRR G C RG
Sbjct: 83 FRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRR--GGDCSRG 140
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRAGSKED-SPLSLSP- 176
C FAHG FE WLHP RYRT FFAH+ +LR E+ S +S SP
Sbjct: 141 DDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPENVSGVSASPS 200
Query: 177 ---KSTLASLWESPPVSPVEGR 195
K+ S P S + G
Sbjct: 201 PAAKNPCCLFCSSSPTSTLLGN 222
>AT2G25900.1 | chr2:11041817-11042764 FORWARD LENGTH=316
Length = 315
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F +YEFK+RRCAR RSHDWT CP+AHPGE ARRRDPR+ Y+G CP+FR+ +C RG
Sbjct: 91 FRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRK---GSCRRG 147
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRAGSKEDSPLSLSPKS 178
+C F+HG FE WLHPSRYRT FFAHT +LR P SL P
Sbjct: 148 DSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRV-----LPCSLDPDL 202
Query: 179 TLASLWESPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGL 222
S + P S + + + EL+ +MR++ L
Sbjct: 203 GFFSGLATSPTSILVSPSFSPPSESPPLSPSTGELIASMRKMQL 246
>AT4G29190.1 | chr4:14392233-14393303 REVERSE LENGTH=357
Length = 356
Score = 137 bits (344), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MY+FKVRRCAR RSHDWT CPYAHPGE ARRRDPR+ Y+G CPDFR+ C +G
Sbjct: 80 FRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRK---GGCKKG 136
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELR 163
+C FAHG FE WLHP+RYRT FFAH+ +LR
Sbjct: 137 DSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLR 181
>AT5G44260.1 | chr5:17829974-17831119 REVERSE LENGTH=382
Length = 381
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 70/106 (66%), Gaps = 2/106 (1%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MYEFK+RRC R+RSHDWT CP++HPGE ARRRDPRR YTGE CP+F R C RG
Sbjct: 61 FRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRDPRRFHYTGEVCPEFSRH--GDCSRG 118
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRA 164
C FAHG FE WLHPSRYRT FFAH+ +LR
Sbjct: 119 DECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRV 164
>AT2G19810.1 | chr2:8550419-8551498 FORWARD LENGTH=360
Length = 359
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 70/106 (66%), Gaps = 3/106 (2%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MYEFKVRRCAR RSHDWT CPYAHPGE ARRRDPR+ Y+G CP+FR+ C RG
Sbjct: 79 FRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRK---GCCKRG 135
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELRA 164
C F+HG FE WLHP+RYRT FFAH+ ++R
Sbjct: 136 DACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRV 181
>AT2G41900.1 | chr2:17491352-17493502 FORWARD LENGTH=717
Length = 716
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MY FKVR C+RA SHDWT CP+ HPGE ARRRDPR+ Y+ PCPDFR+ AC RG
Sbjct: 262 FRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRK---GACRRG 318
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELR 163
C +AHG FE WLHP++YRT FFAHT ELR
Sbjct: 319 DMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELR 363
>AT2G40140.1 | chr2:16772537-16774330 FORWARD LENGTH=598
Length = 597
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 91/163 (55%), Gaps = 22/163 (13%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F M+ FKV+ C+RA SHDWT CP+ HPGE ARRRDPR+ YT PCP+FR+ +CP+G
Sbjct: 215 FRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRK---GSCPKG 271
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELR-----AGSKEDSPLS 173
+C +AHG FE WLHP++YRT FFAH ELR GS SP S
Sbjct: 272 DSCEYAHGVFESWLHPAQYRTRLCKDETGCARRVCFFAHRRDELRPVNASTGSAMVSPRS 331
Query: 174 ---------LSPKSTLASLWESP-----PVSPVEGRRWVDGID 202
+SP + +S SP P+SP G W + ++
Sbjct: 332 SNQSPEMSVMSPLTLGSSPMNSPMANGVPLSPRNGGLWQNRVN 374
>AT5G58620.1 | chr5:23693959-23695782 FORWARD LENGTH=608
Length = 607
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 82/139 (58%), Gaps = 8/139 (5%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MY FK++ C+RA SHDWT CP+ HPGE ARRRDPR+ Y+ PCP+FR+ +C RG
Sbjct: 210 FRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRK---GSCSRG 266
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELR-----AGSKEDSPLS 173
TC +AHG FE WLHP++YRT FFAH ELR GS SP S
Sbjct: 267 DTCEYAHGIFECWLHPAQYRTRLCKDETNCSRRVCFFAHKPEELRPLYPSTGSGVPSPRS 326
Query: 174 LSPKSTLASLWESPPVSPV 192
++ ++ P+SP+
Sbjct: 327 SFSSCNSSTAFDMGPISPL 345
>AT3G55980.1 | chr3:20776857-20778599 FORWARD LENGTH=581
Length = 580
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 86/146 (58%), Gaps = 15/146 (10%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MY FKV+ C+RA SHDWT C + HPGE ARRRDPR+ YT PCP+FR+ +CP+G
Sbjct: 212 FRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPEFRK---GSCPKG 268
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELR-AGSKEDSPLSLSPK 177
+C +AHG FE WLHP++Y+T FFAH E+R + S ++ SP
Sbjct: 269 DSCEYAHGVFESWLHPAQYKTRLCKDETGCARKVCFFAHKREEMRPVNASTGSAVAQSPF 328
Query: 178 STL-----------ASLWESPPVSPV 192
S+L +S +PPVSP+
Sbjct: 329 SSLEMMPGLSPLAYSSGVSTPPVSPM 354
>AT5G12850.1 | chr5:4057068-4059188 FORWARD LENGTH=707
Length = 706
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F M+ FK+R C+RA SHDWT CP+AHPGE ARRRDPR+ YT PCPDF++ +C +G
Sbjct: 258 FRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKK---GSCKQG 314
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELR 163
C +AHG FE WLHP++YRT FFAH ELR
Sbjct: 315 DMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHANEELR 359
>AT5G07500.1 | chr5:2372716-2373453 FORWARD LENGTH=246
Length = 245
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
F MY +K++RC R RSHDWT CPYAH GE A RRDPRR Y CP FR AC RG
Sbjct: 53 FRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFR---NGACHRG 109
Query: 119 STCPFAHGTFELWLHPSRYRTXXXXXXXXXXXXXXFFAHTAGELR 163
+C FAHG FE WLHP+RYRT FFAH +LR
Sbjct: 110 DSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLR 154
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,452,252
Number of extensions: 199875
Number of successful extensions: 497
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 11
Length of query: 255
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 159
Effective length of database: 8,474,633
Effective search space: 1347466647
Effective search space used: 1347466647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)