BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0576100 Os07g0576100|Os07g0576100
(151 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0576100 GH3 auxin-responsive promoter family protein 272 5e-74
Os07g0592600 Similar to Indole-3-acetic acid-amido syntheta... 195 1e-50
Os01g0764800 Similar to Nt-gh3 deduced protein 154 2e-38
Os01g0785400 GH3 auxin-responsive promoter family protein 126 5e-30
Os05g0500900 Similar to Indole-3-acetic acid-amido syntheta... 118 2e-27
Os05g0453600 107 4e-24
Os11g0528700 Similar to Indole-3-acetic acid-amido syntheta... 103 3e-23
Os07g0671500 Similar to Indole-3-acetic acid-amido syntheta... 91 2e-19
Os06g0499500 Similar to Indole-3-acetic acid-amido syntheta... 86 1e-17
Os11g0186500 86 1e-17
Os01g0221100 GH3 auxin-responsive promoter family protein 85 2e-17
Os05g0586200 GH3 auxin-responsive promoter family protein 77 4e-15
>Os07g0576100 GH3 auxin-responsive promoter family protein
Length = 151
Score = 272 bits (696), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 137/151 (90%), Positives = 137/151 (90%)
Query: 1 MAAKGISTIGXXXXXXXXXXXXXXKEPDVENLRLIEELTSNVDAVQERVLAEILGRNADA 60
MAAKGISTIG KEPDVENLRLIEELTSNVDAVQERVLAEILGRNADA
Sbjct: 1 MAAKGISTIGAASRSLSSSLMAAAKEPDVENLRLIEELTSNVDAVQERVLAEILGRNADA 60
Query: 61 EYLDKCGLDASDTDRATFRAKVPVASYDDLKPYVKRIANGDRSPILSTHPIIEFFTSSGT 120
EYLDKCGLDASDTDRATFRAKVPVASYDDLKPYVKRIANGDRSPILSTHPIIEFFTSSGT
Sbjct: 61 EYLDKCGLDASDTDRATFRAKVPVASYDDLKPYVKRIANGDRSPILSTHPIIEFFTSSGT 120
Query: 121 SAGERKLMPIVTDEMARREVLSSLATSVLNV 151
SAGERKLMPIVTDEMARREVLSSLATSVLNV
Sbjct: 121 SAGERKLMPIVTDEMARREVLSSLATSVLNV 151
>Os07g0592600 Similar to Indole-3-acetic acid-amido synthetase GH3.3 (EC 6.3.2.-)
(Auxin- responsive GH3-like protein 3) (AtGH3-3)
Length = 605
Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 107/127 (84%), Gaps = 1/127 (0%)
Query: 25 KEPDVENLRLIEELTSNVDAVQERVLAEILGRNADAEYLDKCGLDASDTDRATFRAKVPV 84
KE DVE LR I+E+T+NVDAVQERVL EILGRNA EYL KCGLD + TDRA FRAKVPV
Sbjct: 23 KEGDVEKLRFIDEMTTNVDAVQERVLGEILGRNAGTEYLTKCGLDGA-TDRAAFRAKVPV 81
Query: 85 ASYDDLKPYVKRIANGDRSPILSTHPIIEFFTSSGTSAGERKLMPIVTDEMARREVLSSL 144
SYDDL+PY++RIANGDRSPILSTHP+ EF TSSGTSAGERKLMP + DE+ RR++L SL
Sbjct: 82 VSYDDLQPYIQRIANGDRSPILSTHPVSEFLTSSGTSAGERKLMPTIMDELDRRQLLYSL 141
Query: 145 ATSVLNV 151
V+N+
Sbjct: 142 LMPVMNL 148
>Os01g0764800 Similar to Nt-gh3 deduced protein
Length = 614
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 95/126 (75%), Gaps = 1/126 (0%)
Query: 26 EPDVENLRLIEELTSNVDAVQERVLAEILGRNADAEYLDKCGLDASDTDRATFRAKVPVA 85
E D E L IEE+T DAVQERVLA IL RN AEYL + G++ TDR F+A+VPV
Sbjct: 27 ERDAEKLEFIEEMTRGFDAVQERVLAAILARNNGAEYLRRHGMEGR-TDREAFKARVPVV 85
Query: 86 SYDDLKPYVKRIANGDRSPILSTHPIIEFFTSSGTSAGERKLMPIVTDEMARREVLSSLA 145
+Y+DL+P ++RIANGDRS I+S+HPI EF TSSGTSAGERKLMP + DE+ RR++L SL
Sbjct: 86 TYEDLRPEIERIANGDRSNIISSHPITEFLTSSGTSAGERKLMPTIEDELDRRQMLYSLL 145
Query: 146 TSVLNV 151
V+N+
Sbjct: 146 MPVMNL 151
>Os01g0785400 GH3 auxin-responsive promoter family protein
Length = 610
Score = 126 bits (317), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 79/121 (65%)
Query: 30 ENLRLIEELTSNVDAVQERVLAEILGRNADAEYLDKCGLDASDTDRATFRAKVPVASYDD 89
E L IE +T+N VQ RVL EIL +NA AEYL + G+ S FR VP+ +Y+
Sbjct: 22 EALEFIEHVTANAGQVQRRVLGEILAQNAPAEYLRRYGIPGSPDVVDAFRRLVPLVTYEG 81
Query: 90 LKPYVKRIANGDRSPILSTHPIIEFFTSSGTSAGERKLMPIVTDEMARREVLSSLATSVL 149
L+P + RIANGD SPI S PI EF TSSGTS GERKLMP + DEM RR +L SL V+
Sbjct: 82 LQPDILRIANGDTSPIFSGKPISEFLTSSGTSGGERKLMPTIADEMNRRSLLYSLLMPVM 141
Query: 150 N 150
+
Sbjct: 142 S 142
>Os05g0500900 Similar to Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-)
(Auxin- responsive GH3-like protein 5) (AtGH3-5)
Length = 629
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 79/123 (64%), Gaps = 3/123 (2%)
Query: 30 ENLRLIEELTSNVDAVQERVLAEILGRNADAEYLDKCGL--DASDTDRATFRAKVPVASY 87
E L IE +T N Q RVL EIL +NA AEYL + G+ DA D A FR P+ +Y
Sbjct: 25 EKLEHIERVTRNAGQEQRRVLEEILAQNAQAEYLRRLGVPGDAPGADEA-FRRLAPLVTY 83
Query: 88 DDLKPYVKRIANGDRSPILSTHPIIEFFTSSGTSAGERKLMPIVTDEMARREVLSSLATS 147
+D+ P V RIANGD SPILS P+ EF TSSGTS GERKLMP + +EM RR L SL
Sbjct: 84 EDILPDVLRIANGDTSPILSGKPVSEFLTSSGTSGGERKLMPTIEEEMERRSGLYSLLMP 143
Query: 148 VLN 150
V++
Sbjct: 144 VMS 146
>Os05g0453600
Length = 124
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
Query: 26 EPDVENLRLIEELTSNVDAVQERVLAEILGRNADAEYLDKCGLDASDTDRATFRAKVPVA 85
E D E L IEE+T AVQERVLA IL RN EYL + G++ TDR F+A+VP+
Sbjct: 27 ERDAEKLEFIEEMTRGFYAVQERVLAAILARNNGTEYLRRHGMEGR-TDREVFKARVPIV 85
Query: 86 SYDDLKPYVKRIANGDRSPILSTHPIIEFFTS 117
+Y+DL+P ++R ANGDRS I+S+HPI EF TS
Sbjct: 86 TYEDLRPEIERTANGDRSNIISSHPITEFLTS 117
>Os11g0528700 Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC
6.3.2.-) (Auxin- responsive GH3-like protein 17)
(AtGH3-17)
Length = 469
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 75/126 (59%), Gaps = 7/126 (5%)
Query: 32 LRLIEELTSNVDAVQERVLAEILGRNADAEYLDK-------CGLDASDTDRATFRAKVPV 84
L LIE LT+ AVQ RVLAE+L N +YL + D A F+ +VPV
Sbjct: 47 LELIEVLTTRAAAVQRRVLAEVLAMNTGTDYLRRFLGDEVVAAAGGEDELAAAFKERVPV 106
Query: 85 ASYDDLKPYVKRIANGDRSPILSTHPIIEFFTSSGTSAGERKLMPIVTDEMARREVLSSL 144
Y+D+KPY++RIANG S ++S+ PI E TSSGTS G+ KLMP +E+ R+ L +L
Sbjct: 107 VEYEDVKPYIERIANGAPSSLISSKPITELLTSSGTSGGQPKLMPATEEELDRKTFLYNL 166
Query: 145 ATSVLN 150
V+N
Sbjct: 167 LVPVMN 172
>Os07g0671500 Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC
6.3.2.-) (Auxin- responsive GH3-like protein 17)
(AtGH3-17)
Length = 242
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 35 IEELTSNVDAVQERVLAEILGRNADAEYLDKCGLDASDTDRATFRAKVPVASYDDLKPYV 94
+E LT N QE +L +IL RN EYL K T+ + F+ VPV +YD + PY+
Sbjct: 17 LEMLTVNAKEAQELILTKILERNQATEYLSK--FMNGSTNISAFKRHVPVVTYDKVHPYI 74
Query: 95 KRIANGDRSPILSTHPIIEFFTSSGTSAGERKLMPIVTDEMARREVLSSLATSVLN 150
RIA G+ S IL I+E SSGTS GE +LMP + ++ RR L SL ++N
Sbjct: 75 LRIATGEESSILCGEYILELLRSSGTSRGEPRLMPSILKDLDRRTYLYSLIMPIMN 130
>Os06g0499500 Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC
6.3.2.-) (Auxin- responsive GH3-like protein 17)
(AtGH3-17)
Length = 620
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 34 LIEELTSNVDAVQERVLAEILGRNADAEYLDK-CGLDASDTD--RATFRAKVPVASYDDL 90
LI LT++ +Q VL EIL RN+ EYL + G A D D R F+ +VPV+ Y+D+
Sbjct: 19 LIHRLTADAAGIQRGVLREILSRNSGTEYLRRFLGGAAGDDDDVRDAFKRRVPVSGYEDV 78
Query: 91 KPYVKRIANGDR--SPILSTHPIIEFFTSSGTSAGERKLMPIVTDEMARREVLSSLATSV 148
KPYV R+A+G S +L + PI SSGTS G++KL+P +E+ R+ ++ V
Sbjct: 79 KPYVDRVASGGEPSSALLCSDPITCLSRSSGTSGGQQKLLPSTAEELDRKVFFYAVQALV 138
Query: 149 LNV 151
N+
Sbjct: 139 RNM 141
>Os11g0186500
Length = 613
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 28 DVENLRLIEELTSNVDAVQERVLAEILGRNADAEYLDKCGLDASDTDRATFRAKVPVASY 87
D E + E T + VQ L IL NA EYL + GL A TD +FRA+VPV ++
Sbjct: 14 DEEIMAWFERTTRDAADVQRETLRRILAENAGVEYLRELGL-AGLTDAGSFRARVPVVTH 72
Query: 88 DDLKPYVKRIANGDRSPILSTHPIIEFFTSSGTSAGERKLMPIVTDEMARREV 140
DL PY++R+A+GD SP+L+ P+ SSGT+ G+RK + + D++ R +
Sbjct: 73 ADLDPYIQRVADGDASPVLTAKPVTAISLSSGTTQGKRKRL-LFNDDLLRSSI 124
>Os01g0221100 GH3 auxin-responsive promoter family protein
Length = 462
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 35 IEELTSNVDAVQERVLAEILGRNADAEYLDKCGLDASDTDRATFRAKVPVASYDDLKPYV 94
E +T + VQ L IL N EYL GL A TD ATFRA+VP+A++ DL+PY+
Sbjct: 24 FERVTRDAANVQRETLRRILAENGGVEYLRGLGL-AGATDPATFRARVPLATHADLEPYI 82
Query: 95 KRIANGDRSPILSTHPIIEFFTSSGTSAGERKLMPIVTDEMAR 137
RIA+GD SP+L+ P SSGT+ G+RK + + +E+ +
Sbjct: 83 DRIADGDASPVLTAKPATSISLSSGTTQGKRKYL-LFNEELVK 124
>Os05g0586200 GH3 auxin-responsive promoter family protein
Length = 581
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 30 ENLRLIEELTSNVDAVQERVLAEILGRNADAEYLDKCGLDASDTDRATFRAKVPVASYDD 89
E + E LT + VQ+ L +IL NA AEYL GL TD ++++ +P+ ++D
Sbjct: 8 ETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNFGL-GGRTDAESYKSCIPLCVHND 66
Query: 90 LKPYVKRIANGDRSPILSTHPIIEFFTSSGTSAGERKLMPIVTDEM 135
++PY++RI +GD SP+++ PI SSGT+ G+ K +P DE+
Sbjct: 67 IEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHGKPKFIPF-NDEL 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,988,274
Number of extensions: 149735
Number of successful extensions: 302
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 12
Length of query: 151
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 59
Effective length of database: 12,232,113
Effective search space: 721694667
Effective search space used: 721694667
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 151 (62.8 bits)