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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0221100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GH3 auxin-responsive promoter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.73 (0.0371) R2 : 0.53
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.35 (0.11) R2dC : 0.704 R2C : 0.427
β3 : 1 (0.141) R2dE : 0.0773 R2E : -0.196
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.395 (0.0784) R2dN8 : 0.034 R2N8 : 0.0135
σ : 0.695
deviance : 222.76
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_____
C
peak time of C : 21.9
E
wheather : humidity
threshold : 72.06
memory length : 966
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.42 0.696 3.73 -0.353 2.22 0.839 -0.623 0.179 0.369 22 72 1051 -- --
218.67 0.689 3.75 -0.37 2.26 0.854 -0.705 -- 0.327 21.9 72 968 -- --
219.73 0.69 3.74 -0.366 2.27 0.875 -- 0.48 0.34 21.9 72 996 -- --
220.25 0.691 3.74 -0.328 2.34 0.963 -- -- 0.358 21.9 72.04 962 -- --
417.53 0.957 3.68 -0.36 -- 0.629 -- -0.859 0.28 -- 72 996 -- --
239.42 0.725 3.74 -0.485 1.91 -- -0.802 -- 0.279 21.9 -- -- -- --
241.9 0.728 3.74 -0.453 1.91 -- -- -- 0.281 21.9 -- -- -- --
421.7 0.961 3.69 -0.383 -- 0.624 -- -- 0.273 -- 72.04 962 -- --
222.76 0.695 3.73 -- 2.35 1 -- -- 0.395 21.9 72.06 966 -- --
460.39 1 3.69 -0.433 -- -- -- -- 0.28 -- -- -- -- --
247.32 0.736 3.73 -- 1.91 -- -- -- 0.331 21.8 -- -- -- --
411.9 0.948 3.69 -- -- 0.756 -- -- 0.265 -- 71 1534 -- --
465.34 1.01 3.68 -- -- -- -- -- 0.328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.35 radiation 20 720 < th dose independent rect. 16 9
2 214.76 radiation 40 720 < th dose dependent rect. 16 9
3 214.77 radiation 20 720 < th dose dependent rect. 15 4
8 215.84 atmosphere 1010 10 < th dose dependent rect. 16 14
11 216.08 radiation 10 720 < th dose independent rect. 15 4
12 216.18 radiation 1 1440 > th dose independent rect. 13 2
16 216.48 radiation 10 1440 > th dose independent rect. 11 1
20 216.86 radiation 1 1440 > th dose independent rect. 11 4
24 217.16 atmosphere 1005 90 < th dose independent rect. 16 13
26 217.35 radiation 1 1440 < th dose independent rect. 10 5
27 217.35 radiation 1 1440 < th dose dependent rect. 10 5
34 217.45 humidity 60 14400 > th dose independent rect. 21 11
42 217.68 atmosphere 1010 10 < th dose dependent sin 12 NA
44 217.84 radiation 1 30 > th dose independent rect. 17 23
59 218.08 humidity 60 14400 > th dose independent rect. 23 9
67 218.16 radiation 10 720 < th dose independent rect. 15 11
80 218.31 humidity 70 720 > th dose independent rect. 7 12
93 218.47 humidity 60 14400 > th dose independent rect. 7 1
94 218.47 radiation 20 720 < th dose dependent rect. 16 1
112 218.75 humidity 90 720 < th dose independent rect. 20 1
140 219.39 wind 7 4320 > th dose independent rect. 18 1
149 219.60 atmosphere 1010 10 < th dose dependent rect. 16 18
159 219.77 humidity 60 720 > th dose independent rect. 7 19
164 219.83 humidity 60 14400 < th dose independent rect. 6 1
166 219.83 humidity 60 14400 < th dose independent rect. 20 1
168 219.83 radiation 20 14400 > th dose independent rect. 17 1
220 219.83 humidity 60 14400 < th dose dependent rect. 6 1
222 219.83 humidity 60 14400 < th dose dependent rect. 20 1
224 219.83 radiation 20 14400 > th dose dependent rect. 17 1
275 219.84 wind 7 4320 < th dose independent rect. 17 2
280 219.87 atmosphere 1005 90 < th dose independent sin 13 NA
287 219.92 humidity 60 720 > th dose independent rect. 7 21
298 220.08 humidity 80 1440 < th dose dependent rect. 8 6
299 220.08 humidity 50 720 > th dose dependent rect. 7 12
308 220.16 humidity 70 720 > th dose independent rect. 23 20
309 220.16 humidity 80 1440 < th dose dependent rect. 11 2
319 220.30 humidity 70 1440 > th dose independent sin 7 NA
328 220.36 humidity 50 1440 > th dose dependent rect. 11 2
356 220.56 wind 7 4320 > th dose dependent rect. 18 1
362 220.59 radiation 20 720 < th dose independent rect. 16 1
397 220.87 humidity 70 1440 > th dose independent rect. 4 9
398 220.87 humidity 70 1440 > th dose independent rect. 2 11
400 220.88 humidity 70 1440 > th dose independent rect. 7 6
406 220.90 humidity 70 1440 > th dose independent rect. 20 17
411 220.92 humidity 70 1440 > th dose independent rect. 22 15
415 220.93 radiation 10 720 < th dose independent rect. 14 14
458 221.09 humidity 60 1440 < th dose independent rect. 11 4
476 221.13 radiation 40 720 < th dose dependent rect. 14 14
483 221.18 humidity 60 720 > th dose independent rect. 14 5
496 221.29 radiation 1 30 > th dose independent rect. 10 22
497 221.29 humidity 90 14400 > th dose dependent rect. 22 1
502 221.34 atmosphere 1005 90 < th dose independent rect. 19 10
510 221.39 radiation 20 720 < th dose dependent rect. 14 14
520 221.41 humidity 60 1440 < th dose independent rect. 19 20
521 221.41 radiation 20 1440 < th dose dependent rect. 11 1
566 221.53 humidity 60 1440 > th dose independent rect. 11 3
572 221.54 humidity 70 1440 < th dose independent sin 7 NA
580 221.57 humidity 60 720 > th dose independent rect. 16 1
592 221.61 humidity 70 720 > th dose independent rect. 3 16
593 221.61 humidity 60 720 > th dose independent rect. 14 21
599 221.63 humidity 80 1440 < th dose dependent sin 4 NA
654 221.80 humidity 50 1440 > th dose dependent rect. 9 5
669 221.85 humidity 50 14400 > th dose dependent rect. 21 1
700 221.94 humidity 80 1440 > th dose independent rect. 11 2
711 221.98 atmosphere 1005 90 > th dose independent sin 15 NA
729 222.05 humidity 60 720 > th dose independent rect. 14 14
747 222.08 humidity 90 14400 > th dose independent rect. 22 1
753 222.10 temperature 30 720 < th dose independent rect. 16 1
787 222.15 humidity 50 720 > th dose dependent rect. 14 5
794 222.17 atmosphere 1005 90 > th dose independent rect. 15 13
804 222.19 humidity 90 14400 < th dose independent rect. 21 2
821 222.22 wind 5 4320 < th dose dependent rect. 21 2
849 222.26 atmosphere 1010 10 < th dose dependent rect. 14 16
892 222.34 humidity 70 1440 > th dose independent rect. 9 1
978 222.48 humidity 90 14400 > th dose dependent rect. 21 3